Gchil8169.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8169.t1
Unique NameGchil8169.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length312
Homology
BLAST of Gchil8169.t1 vs. uniprot
Match: A0A2V3IRQ4_9FLOR (DNA repair protein XRCC2-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRQ4_9FLOR)

HSP 1 Score: 327 bits (838), Expect = 1.280e-108
Identity = 165/310 (53.23%), Postives = 220/310 (70.97%), Query Frame = 0
Query:    1 MADDEVSKFIAKRLGTYPSSSSN-TEDNMGPIIATGIGILDEIQQHAVRLGSLVDISGVSMSGKTQLLHAITAHILLKHPGGTRPSVCWFDLNRGLDPNRLRHLMRSKRCKSPSASSDAHIDGLHGLSVYYPFSTIAMCSSLHALLDFISTEEGEGVNTVVIDSLGSFHYIDKYAFEKRATHTQVTKQSHELVLCKVLEMLLSTRKVAVFVSKSCLFDETKLDVSWPFPHAGEPSIPRDFMPDLWKKITTHMVLMYHIE-ISKDTEGDCKRGIIAMKRTEPLRPLIRKAVVTAAAVAVIDDEGIRVESMH 308
            M+ D VS+ IA RLGT+    +  T D    ++ TG+ +LDE +   VRLGSL+D++GVS+SGKTQ+LH I A+ LL    G  P VCW+DLNRGLDPNRLR ++ SK+ +  S  ++  I  L GL VY P ST+++C+S+H L  F+S E G GV TV+IDSLGSFHY+DKY F+     +   KQS ELVL +VLE +LS RKV V+VSKSCLFDE KLD+ WPFP AG PS+P+DFMPDLWK +T+H++LMYHIE  S D     +RG++AM   +P + LIRK VV +A++A I+++G+  ES+H
Sbjct:    1 MSPDPVSRAIAARLGTFAIPRNRLTVDRGAAVVRTGLAVLDETRDMPVRLGSLIDVTGVSLSGKTQVLHFIAAYALLNRTCGNGPVVCWYDLNRGLDPNRLRQMIISKQRQGGSNVTERDISDLDGLLVYRPSSTLSLCASIHDLKRFLSAE-GAGVQTVIIDSLGSFHYMDKYEFDSGLRDSSTMKQSIELVLARVLEPILSLRKVVVYVSKSCLFDEVKLDIPWPFPRAGVPSMPKDFMPDLWKNLTSHIILMYHIESTSSDYNNGARRGVVAMYYKDPQKNLIRKPVVGSASLATINNDGLFFESLH 309          
BLAST of Gchil8169.t1 vs. uniprot
Match: R7Q2X9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2X9_CHOCR)

HSP 1 Score: 119 bits (298), Expect = 5.310e-29
Identity = 66/152 (43.42%), Postives = 89/152 (58.55%), Query Frame = 0
Query:  156 VNTVVIDSLGSFHYIDKYAFEKRATHTQVTKQ-SHELVLCKVLEMLLSTRKVAVFVSKSCLFDETKLDVSWPFPHAGEPSIPRDFMPDLWKKITTHMVLMYHIEISKDTEG----DCKRGIIAMKRTEPLRPLIRKAVVTAAAVAVIDDEGI 302
            V  V+ID+LG+FHY+DK+         +     ++E VL  VL  LL ++KV VF SKS LF+E  L V WPF  AG PSIPR+FMP  W+ I+ H VL+Y     +  E     D +RGI+++ R E     IR+  VTAA+   ID +GI
Sbjct:   35 VRNVIIDALGTFHYLDKFQISTSDVREKAPGSGTNEFVLVNVLRELLKSQKVIVFASKSALFEEEALGVKWPFSQAGIPSIPREFMPSSWRSISLHTVLLYFTADGRSAEAHERIDQRRGIVSLLRNED-NSFIREMTVTAASTIRIDSDGI 185          
BLAST of Gchil8169.t1 vs. uniprot
Match: UPI000B7829FA (DNA repair protein XRCC2 homolog isoform X1 n=4 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B7829FA)

HSP 1 Score: 70.1 bits (170), Expect = 5.180e-10
Identity = 65/281 (23.13%), Postives = 129/281 (45.91%), Query Frame = 0
Query:   39 LDEIQQHAVRLGSLVDISGVSMSGKTQLL-HAITAHILLKHPGGTRPSVCWFDLNRGLDPNRLRHLMRSK---RCKSPSASSDAHIDGLHG---LSVYYPFSTIAMCSSLHALLDFISTEEGEGVNTVVIDSLGSFHYIDKYA--FEKRATHTQ-VTKQSHELVLCKVLEMLLSTRKVAVFVSKSCLF------DETKLDVSWPF-PHAGEPSIP--------RDFMPDLWKKITTHMVLMYHIEISKDTEGDCKRGIIAMKRTEPLRPLIRKAVVTAAAV 294
            L   Q+  +R+G++V++ G S   KT +L  A    IL KH GG    V + DL+   D  RL  ++R++     K+ S   +  ++ +     +  Y     +A   +LH  L      +G GVN ++IDS+G+FH++D+ +  F   A + + ++ Q+  + + + ++ L+    + V  +K+ +       +E K ++  P  P +   S+         R++MP +W+   T  +L+   +    TE +  + +   +   P    +   +V  A V
Sbjct:   39 LPPFQKFPLRVGNVVELVGPSPCAKTHILMQAAIDCILPKHYGGLGHLVLFIDLDCRFDILRLSQMLRNRIFQANKNQSNDEELFVECMRRFLYIRCYDTLEFLATLKTLHYQLQKERQAQGIGVNFLMIDSIGAFHWVDRASTSFHLGANNRKGLSLQNVSVTVVQEIKKLVLVHPMLVIAAKATILGNRYAANEVKWNLKRPCSPDSAASSVTNKVHQLMYREYMPSIWQSFVTLRILIQASDDHISTENNHNKSVYLSEWLMPPLSFVDSFIVKDAGV 319          
BLAST of Gchil8169.t1 vs. uniprot
Match: UPI000B77FC2F (DNA repair protein XRCC2 homolog isoform X2 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B77FC2F)

HSP 1 Score: 67.8 bits (164), Expect = 3.100e-9
Identity = 59/241 (24.48%), Postives = 116/241 (48.13%), Query Frame = 0
Query:   39 LDEIQQHAVRLGSLVDISGVSMSGKTQLL-HAITAHILLKHPGGTRPSVCWFDLNRGLDPNRLRHLMRSK---RCKSPSASSDAHIDGLHG---LSVYYPFSTIAMCSSLHALLDFISTEEGEGVNTVVIDSLGSFHYIDKYA--FEKRATHTQ-VTKQSHELVLCKVLEMLLSTRKVAVFVSKSCLF------DETKLDVSWPF-PHAGEPSIP--------RDFMPDLWKKITTHMVLM 254
            L   Q+  +R+G++V++ G S   KT +L  A    IL KH GG    V + DL+   D  RL  ++R++     K+ S   +  ++ +     +  Y     +A   +LH  L      +G GVN ++IDS+G+FH++D+ +  F   A + + ++ Q+  + + + ++ L+    + V  +K+ +       +E K ++  P  P +   S+         R++MP +W+   T  +L+
Sbjct:   39 LPPFQKFPLRVGNVVELVGPSPCAKTHILMQAAIDCILPKHYGGLGHLVLFIDLDCRFDILRLSQMLRNRIFQANKNQSNDEELFVECMRRFLYIRCYDTLEFLATLKTLHYQLQKERQAQGIGVNFLMIDSIGAFHWVDRASTSFHLGANNRKGLSLQNVSVTVVQEIKKLVLVHPMLVIAAKATILGNRYAANEVKWNLKRPCSPDSAASSVTNKVHQLMYREYMPSIWQSFVTLRILI 279          
BLAST of Gchil8169.t1 vs. uniprot
Match: A0A2G5BCH6_COERN (Rad51 domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BCH6_COERN)

HSP 1 Score: 62.4 bits (150), Expect = 1.800e-7
Identity = 44/152 (28.95%), Postives = 77/152 (50.66%), Query Frame = 0
Query:   34 TGIGILDEIQQHAVRLGSLVDISGVSMSGKTQLLHAITAHILLKHPGGTRPSVCWFDLNRGLDPNRLRHLMRSKRCKSPSASSDA-HIDGLHGLSVYYPFSTIAMCSSLHALLDFISTEEGEGVNTVVIDSLGSFHYIDKYAFEKRATHTQV 184
            TG+  +D   +      ++V+++G + SGKTQ L+ I A   L    G R  V + D++  +D  +L   MR+      +A  DA   + L  + V+ P +T+A+ ++L  L  ++       V  VV+D LGS H+ID    ++ A H ++
Sbjct:   41 TGVEAIDAALRQTDGTQTVVELAGTAGSGKTQTLYRICAAHALAGADGERGHVVFVDVDGRMDVRQLAQTMRA------TAGDDAVAAEALQRVHVFAPATTVALIATLATLGVYVGARRAR-VTAVVVDGLGSNHWID----QREAAHVRL 181          
BLAST of Gchil8169.t1 vs. uniprot
Match: A0A5N5HES0_9ROSA (DNA repair protein XRCC2-like protein n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5HES0_9ROSA)

HSP 1 Score: 58.2 bits (139), Expect = 8.610e-6
Identity = 59/250 (23.60%), Postives = 111/250 (44.40%), Query Frame = 0
Query:   38 ILDEIQQHAVRLGSLVDISGVSMSGKTQLLHAITAHILLK------HPGGTRPSVCWFDLNRGLDPNRLRHLMRSKRCKSPSASSDAHIDGLHGLSV--------YYPFSTIAMCSSLHALLDFISTEEGEGVNTVVIDSLGSFHYIDKYAF------EKRATHTQVTKQSHELVLCKVLEMLLSTRKVAVFVSKSCLFD------ETKLDVSWPFPH------AGEPSIP-RDFMPDLWKKITTHMVLM 254
            ++  + +  +R+G++V++ G S S KT +L     + +L       H GG    V + DL+   D  RL  +++  R   P+ S + + +GL  L +        Y     +A   ++H  L     E    +  ++IDS+GSFH+ID+ +       EKR    +++ QS    + + +  L     + V  +K  +        E K + S+P         +    +P R++MP +W+   TH +L+
Sbjct:  311 LIPPLHRVPLRVGNVVELVGPSSSAKTLILIQAAVNCILPKEWNGVHYGGLERLVMFLDLDCRFDVLRLSEMLKL-RIMEPNGSMN-YDEGLFNLCMRRFLYVRCYDSLQFLATLKTMHYRLRKEKEEHHVSIYLLMIDSIGSFHWIDRGSTFFPLGGEKRK---RLSLQSVSDAVVQEIRKLQLVHPMLVITTKEIILGNAYGAYEAKQNTSFPEVSDLRNSTSNTQQLPYREYMPSVWQSFVTHKLLV 555          
The following BLAST results are available for this feature:
BLAST of Gchil8169.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IRQ4_9FLOR1.280e-10853.23DNA repair protein XRCC2-like n=1 Tax=Gracilariops... [more]
R7Q2X9_CHOCR5.310e-2943.42Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI000B7829FA5.180e-1023.13DNA repair protein XRCC2 homolog isoform X1 n=4 Ta... [more]
UPI000B77FC2F3.100e-924.48DNA repair protein XRCC2 homolog isoform X2 n=1 Ta... [more]
A0A2G5BCH6_COERN1.800e-728.95Rad51 domain-containing protein n=1 Tax=Coemansia ... [more]
A0A5N5HES0_9ROSA8.610e-623.60DNA repair protein XRCC2-like protein n=1 Tax=Pyru... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 31..294
e-value: 1.3E-20
score: 76.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 31..172
IPR013632DNA recombination and repair protein Rad51-like, C-terminalPFAMPF08423Rad51coord: 32..211
e-value: 5.1E-7
score: 29.2
IPR030547DNA repair protein XRCC2PANTHERPTHR46644DNA REPAIR PROTEIN XRCC2coord: 36..296

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:402317..403320 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8169.t1Gchil8169.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004384_pilon 402317..403320 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8169.t1 ID=Gchil8169.t1|Name=Gchil8169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=312bp
MADDEVSKFIAKRLGTYPSSSSNTEDNMGPIIATGIGILDEIQQHAVRLG
SLVDISGVSMSGKTQLLHAITAHILLKHPGGTRPSVCWFDLNRGLDPNRL
RHLMRSKRCKSPSASSDAHIDGLHGLSVYYPFSTIAMCSSLHALLDFIST
EEGEGVNTVVIDSLGSFHYIDKYAFEKRATHTQVTKQSHELVLCKVLEML
LSTRKVAVFVSKSCLFDETKLDVSWPFPHAGEPSIPRDFMPDLWKKITTH
MVLMYHIEISKDTEGDCKRGIIAMKRTEPLRPLIRKAVVTAAAVAVIDDE
GIRVESMHAVV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR013632DNA_recomb/repair_Rad51_C
IPR030547XRCC2