Gchil8169.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8169.t1
Unique NameGchil8169.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length312
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:402317..403320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5286.M7WQF5
PFAMsRad51
Max annot lvl4751|Fungi
KEGG koko:K10879
KEGG Pathwayko03440,map03440
Evalue4.29e-13
EggNOG OGsKOG2859@1|root,KOG2859@2759|Eukaryota,3A51P@33154|Opisthokonta,3P46M@4751|Fungi,3VC7F@5204|Basidiomycota
DescriptionRad51 family DNA repair protein
COG categoryS
BRITEko00000,ko00001,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8169Gchil8169Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 402317..403320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8169.t1Gchil8169.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 402317..403320 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8169.t1.stop1Gchil8169.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 402317..402319 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8169.t1.CDS1Gchil8169.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 402317..402786 -
Gchil8169.t1.CDS2Gchil8169.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 402855..403320 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8169.t1.exon1Gchil8169.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 402317..402786 -
Gchil8169.t1.exon2Gchil8169.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 402855..403320 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8169.t1.intron1Gchil8169.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 402787..402854 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8169.t1.start1Gchil8169.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 403318..403320 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8169.t1 ID=Gchil8169.t1|Name=Gchil8169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=312bp
MADDEVSKFIAKRLGTYPSSSSNTEDNMGPIIATGIGILDEIQQHAVRLG
SLVDISGVSMSGKTQLLHAITAHILLKHPGGTRPSVCWFDLNRGLDPNRL
RHLMRSKRCKSPSASSDAHIDGLHGLSVYYPFSTIAMCSSLHALLDFIST
EEGEGVNTVVIDSLGSFHYIDKYAFEKRATHTQVTKQSHELVLCKVLEML
LSTRKVAVFVSKSCLFDETKLDVSWPFPHAGEPSIPRDFMPDLWKKITTH
MVLMYHIEISKDTEGDCKRGIIAMKRTEPLRPLIRKAVVTAAAVAVIDDE
GIRVESMHAVV*
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spliced messenger RNA

>Gchil8169.t1 ID=Gchil8169.t1|Name=Gchil8169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=936bp|location=Sequence derived from alignment at tig00004384_pilon:402317..403320- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGATGACGAAGTATCCAAGTTTATCGCAAAACGTCTCGGTACTTA
TCCTTCTTCCAGCAGCAACACAGAAGACAACATGGGTCCGATCATTGCCA
CAGGTATTGGGATTCTTGATGAAATTCAACAACATGCGGTACGACTCGGA
AGCTTAGTTGACATAAGTGGTGTAAGCATGAGCGGCAAGACTCAGCTTCT
TCATGCGATAACGGCACATATCCTACTGAAGCATCCCGGCGGAACAAGGC
CAAGTGTATGTTGGTTCGATCTCAATCGAGGCTTGGATCCAAACCGTCTT
AGACATTTAATGCGCTCGAAACGTTGTAAAAGCCCCAGCGCATCCTCTGA
TGCTCATATTGACGGGTTGCATGGTTTAAGCGTGTACTATCCATTTTCCA
CGATAGCAATGTGCTCCTCTCTTCATGCTCTATTGGATTTTATATCGACT
GAAGAGGGCGAAGGAGTGAATACGGTGGTAATAGATTCTCTTGGTAGCTT
CCATTACATTGACAAGTACGCTTTCGAAAAACGTGCTACACATACACAAG
TGACAAAACAGTCTCACGAATTGGTGCTTTGCAAGGTACTTGAGATGCTG
CTTTCAACGCGAAAAGTTGCCGTGTTTGTGAGCAAGTCATGTCTTTTTGA
TGAAACTAAGCTTGATGTGTCGTGGCCATTTCCCCATGCTGGAGAACCTT
CGATTCCGAGGGATTTTATGCCTGACCTGTGGAAGAAGATTACCACACAT
ATGGTTCTAATGTATCACATCGAGATCTCCAAGGATACAGAGGGTGATTG
CAAACGAGGAATAATTGCCATGAAGCGTACCGAACCGTTGAGACCTCTAA
TTAGAAAAGCTGTTGTCACTGCCGCTGCTGTCGCAGTCATTGATGATGAA
GGGATAAGGGTGGAGTCCATGCATGCCGTGGTATGA
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protein sequence of Gchil8169.t1

>Gchil8169.t1 ID=Gchil8169.t1|Name=Gchil8169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=312bp
MADDEVSKFIAKRLGTYPSSSSNTEDNMGPIIATGIGILDEIQQHAVRLG
SLVDISGVSMSGKTQLLHAITAHILLKHPGGTRPSVCWFDLNRGLDPNRL
RHLMRSKRCKSPSASSDAHIDGLHGLSVYYPFSTIAMCSSLHALLDFIST
EEGEGVNTVVIDSLGSFHYIDKYAFEKRATHTQVTKQSHELVLCKVLEML
LSTRKVAVFVSKSCLFDETKLDVSWPFPHAGEPSIPRDFMPDLWKKITTH
MVLMYHIEISKDTEGDCKRGIIAMKRTEPLRPLIRKAVVTAAAVAVIDDE
GIRVESMHAVV*
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mRNA from alignment at tig00004384_pilon:402317..403320-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8169.t1 ID=Gchil8169.t1|Name=Gchil8169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1004bp|location=Sequence derived from alignment at tig00004384_pilon:402317..403320- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGATGACGAAGTATCCAAGTTTATCGCAAAACGTCTCGGTACTTA
TCCTTCTTCCAGCAGCAACACAGAAGACAACATGGGTCCGATCATTGCCA
CAGGTATTGGGATTCTTGATGAAATTCAACAACATGCGGTACGACTCGGA
AGCTTAGTTGACATAAGTGGTGTAAGCATGAGCGGCAAGACTCAGCTTCT
TCATGCGATAACGGCACATATCCTACTGAAGCATCCCGGCGGAACAAGGC
CAAGTGTATGTTGGTTCGATCTCAATCGAGGCTTGGATCCAAACCGTCTT
AGACATTTAATGCGCTCGAAACGTTGTAAAAGCCCCAGCGCATCCTCTGA
TGCTCATATTGACGGGTTGCATGGTTTAAGCGTGTACTATCCATTTTCCA
CGATAGCAATGTGCTCCTCTCTTCATGCTCTATTGGATTTTATATCGACT
GAAGAGGGCGAAGGAGGTAAGAAAGCAAACTGACATTCCCTTTTTATCAA
GCTTGTCTGACTTTGACGAAATGTGTTTCTGTAGTGAATACGGTGGTAAT
AGATTCTCTTGGTAGCTTCCATTACATTGACAAGTACGCTTTCGAAAAAC
GTGCTACACATACACAAGTGACAAAACAGTCTCACGAATTGGTGCTTTGC
AAGGTACTTGAGATGCTGCTTTCAACGCGAAAAGTTGCCGTGTTTGTGAG
CAAGTCATGTCTTTTTGATGAAACTAAGCTTGATGTGTCGTGGCCATTTC
CCCATGCTGGAGAACCTTCGATTCCGAGGGATTTTATGCCTGACCTGTGG
AAGAAGATTACCACACATATGGTTCTAATGTATCACATCGAGATCTCCAA
GGATACAGAGGGTGATTGCAAACGAGGAATAATTGCCATGAAGCGTACCG
AACCGTTGAGACCTCTAATTAGAAAAGCTGTTGTCACTGCCGCTGCTGTC
GCAGTCATTGATGATGAAGGGATAAGGGTGGAGTCCATGCATGCCGTGGT
ATGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:402317..403320-

>Gchil8169.t1 ID=Gchil8169.t1|Name=Gchil8169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=936bp|location=Sequence derived from alignment at tig00004384_pilon:402317..403320- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGATGACGAAGTATCCAAGTTTATCGCAAAACGTCTCGGTACTTA
TCCTTCTTCCAGCAGCAACACAGAAGACAACATGGGTCCGATCATTGCCA
CAGGTATTGGGATTCTTGATGAAATTCAACAACATGCGGTACGACTCGGA
AGCTTAGTTGACATAAGTGGTGTAAGCATGAGCGGCAAGACTCAGCTTCT
TCATGCGATAACGGCACATATCCTACTGAAGCATCCCGGCGGAACAAGGC
CAAGTGTATGTTGGTTCGATCTCAATCGAGGCTTGGATCCAAACCGTCTT
AGACATTTAATGCGCTCGAAACGTTGTAAAAGCCCCAGCGCATCCTCTGA
TGCTCATATTGACGGGTTGCATGGTTTAAGCGTGTACTATCCATTTTCCA
CGATAGCAATGTGCTCCTCTCTTCATGCTCTATTGGATTTTATATCGACT
GAAGAGGGCGAAGGAGTGAATACGGTGGTAATAGATTCTCTTGGTAGCTT
CCATTACATTGACAAGTACGCTTTCGAAAAACGTGCTACACATACACAAG
TGACAAAACAGTCTCACGAATTGGTGCTTTGCAAGGTACTTGAGATGCTG
CTTTCAACGCGAAAAGTTGCCGTGTTTGTGAGCAAGTCATGTCTTTTTGA
TGAAACTAAGCTTGATGTGTCGTGGCCATTTCCCCATGCTGGAGAACCTT
CGATTCCGAGGGATTTTATGCCTGACCTGTGGAAGAAGATTACCACACAT
ATGGTTCTAATGTATCACATCGAGATCTCCAAGGATACAGAGGGTGATTG
CAAACGAGGAATAATTGCCATGAAGCGTACCGAACCGTTGAGACCTCTAA
TTAGAAAAGCTGTTGTCACTGCCGCTGCTGTCGCAGTCATTGATGATGAA
GGGATAAGGGTGGAGTCCATGCATGCCGTGGTATGA
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