Gchil8317.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8317.t1
Unique NameGchil8317.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length668
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004384_piloncontigtig00004384_pilon:1531226..1533292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1313172.YM304_00980
PFAMsBeta_propel
Max annot lvl201174|Actinobacteria
Evalue5e-66
EggNOG OGsCOG1948@1|root,COG4880@2|Bacteria,2I8JU@201174|Actinobacteria
DescriptionBeta propeller domain
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8317Gchil8317Gracilaria chilensis NLEC103_M9 malegenetig00004384_pilon 1531226..1533292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t1Gchil8317.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004384_pilon 1531226..1533292 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t1.stop1Gchil8317.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004384_pilon 1531226..1531228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t1.CDS1Gchil8317.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1531226..1532647 -
Gchil8317.t1.CDS2Gchil8317.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004384_pilon 1532711..1533292 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t1.exon1Gchil8317.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1531226..1532647 -
Gchil8317.t1.exon2Gchil8317.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004384_pilon 1532711..1533292 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t1.intron1Gchil8317.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004384_pilon 1532648..1532710 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8317.t1.start1Gchil8317.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004384_pilon 1533290..1533292 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8317.t1 ID=Gchil8317.t1|Name=Gchil8317.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=668bp
MIAPNPFQKQPRTQRRTMAFFFKSISLAFLLSLLANAAHARLINKFGNCQ
ELKNYYVNTIVDDVDKYGYHVHSAYTPQRDPRSIPNDYDPGTPGGPVGIP
LHRPFATPRRVAGGNLTEADRHTTLDHTDDNGLVAGVDFSSINVQATGVD
DEPDVIKTDGRRVFTISSFTFSVVPVQDGGKADRRVGRLQLPTMRPVYLR
FEPDAQFNHEATVVYQINVKGETPRLVSTLYLEGSFVKSNQVDGVVRIVM
RFSPMRSALMYFPVGNVQPWQAEKWNREIVQYSSPGNWLPTYRVQRNGRE
QYGVYATCGEIYYPPNVFAGLDLFTVVTIPIGGFLEPSSSASIISTAETV
FITKKSMFVTTSEGLSKNSGLSSPRWGFNYHTAIHQFALSDAGASYVASN
SVNGSAISEFAMHEWNDNFFIATTDGATWWSGRDFRRTKVSAFVSNRDKR
QLVKVGEVGNLDVNERSSSLRYIEEAAYVVPSRAFEQAIYIIDISNPRAM
RVTGELELRGISTYLHPAGPGRVLGLGELSTAPTRHTTGVKVSLFDVGDT
TNPRELSSWTLWGEYYVERDVRAFLYWPRASVAVISMISDVLRFAGAIVL
NISESTMTERGRVTHKTTSGWDRGIRRNAIIGTEHLWSMTELTLQVNNLN
NLSKVEAQLPILLPSTP*
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spliced messenger RNA

>Gchil8317.t1 ID=Gchil8317.t1|Name=Gchil8317.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2004bp|location=Sequence derived from alignment at tig00004384_pilon:1531226..1533292- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGCGCCAAATCCCTTTCAGAAACAGCCTCGAACCCAAAGGAGAAC
AATGGCCTTCTTCTTCAAGTCCATCTCCCTGGCTTTCCTCCTTTCCTTGC
TTGCCAACGCTGCCCATGCGCGCCTCATTAACAAGTTTGGCAACTGCCAG
GAGCTCAAAAACTACTACGTCAACACCATCGTCGATGACGTCGATAAATA
CGGCTACCATGTCCATAGCGCATACACTCCACAACGCGATCCGAGATCGA
TCCCGAATGATTATGATCCTGGAACCCCGGGTGGCCCCGTCGGAATTCCC
CTCCACCGCCCTTTCGCTACACCGCGGCGGGTAGCGGGCGGCAATCTCAC
CGAGGCGGATCGCCACACCACCTTGGATCACACCGATGACAATGGTCTTG
TCGCAGGCGTCGACTTTTCCTCAATCAACGTTCAGGCCACGGGTGTTGAC
GACGAGCCGGACGTTATCAAGACGGACGGCCGCCGTGTGTTCACCATCAG
CAGCTTCACTTTTTCCGTTGTGCCAGTGCAGGACGGAGGAAAAGCCGACC
GACGTGTGGGCCGGTTGCAGTTGCCCACCATGCGCCCAGTATACCTTCGG
TTCGAGCCTGACGCTCAGTTTAACCATGAAGCCACCGTTGTGTACCAAAT
TAACGTCAAAGGTGAAACGCCGCGCCTAGTATCTACGCTATACCTCGAGG
GTAGCTTTGTCAAATCTAACCAAGTCGACGGCGTCGTCCGCATTGTCATG
CGCTTCAGCCCAATGCGATCTGCTTTGATGTACTTCCCGGTCGGCAATGT
GCAACCGTGGCAGGCCGAGAAATGGAATCGTGAGATCGTCCAATATTCCA
GCCCTGGCAACTGGCTGCCGACGTACCGTGTGCAGCGCAATGGTCGCGAG
CAATATGGTGTGTACGCAACGTGCGGTGAAATCTACTACCCGCCTAACGT
TTTCGCGGGCCTCGACCTCTTCACAGTCGTCACTATCCCCATTGGGGGAT
TTCTTGAGCCGTCCAGCTCGGCATCCATCATTTCGACCGCTGAAACGGTT
TTCATCACGAAGAAATCGATGTTTGTGACGACAAGTGAAGGACTCTCCAA
AAATTCCGGCTTAAGCTCGCCGCGCTGGGGCTTCAACTACCACACAGCGA
TCCATCAGTTCGCGCTGTCAGACGCTGGCGCATCCTACGTCGCGAGTAAT
TCCGTGAATGGCAGTGCTATCAGCGAGTTTGCGATGCACGAGTGGAACGA
CAACTTCTTTATTGCGACGACGGACGGCGCAACCTGGTGGTCTGGTCGCG
ATTTTCGGCGCACTAAGGTGAGCGCATTCGTGTCGAACCGAGATAAACGG
CAGCTTGTGAAGGTTGGCGAGGTGGGAAACCTTGACGTTAACGAGCGCAG
CTCTTCCCTGCGGTACATTGAAGAAGCGGCATACGTTGTTCCGTCCCGCG
CGTTTGAACAAGCAATATACATCATCGATATTTCGAACCCACGCGCGATG
CGCGTGACGGGTGAACTTGAGCTCCGCGGCATCAGCACGTACCTTCACCC
AGCCGGACCGGGTCGCGTTCTCGGCTTAGGCGAGCTGTCGACCGCGCCGA
CGAGACACACCACAGGCGTGAAAGTGTCATTGTTTGATGTGGGTGACACG
ACCAACCCCCGCGAGCTGTCATCCTGGACGCTATGGGGAGAATACTATGT
AGAACGGGATGTTCGCGCGTTCTTGTACTGGCCGCGCGCGAGCGTGGCGG
TGATTTCGATGATTTCTGATGTGCTGCGGTTCGCTGGAGCGATAGTGCTG
AATATATCCGAATCAACCATGACGGAGCGCGGCCGCGTGACGCATAAGAC
AACTAGTGGGTGGGACCGTGGCATCCGGCGCAATGCGATCATTGGCACCG
AGCACCTGTGGTCCATGACGGAGCTAACGCTCCAAGTGAACAATCTGAAT
AATTTGAGCAAGGTCGAGGCACAGCTTCCCATTTTGCTGCCCAGCACTCC
ATGA
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protein sequence of Gchil8317.t1

>Gchil8317.t1 ID=Gchil8317.t1|Name=Gchil8317.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=668bp
MIAPNPFQKQPRTQRRTMAFFFKSISLAFLLSLLANAAHARLINKFGNCQ
ELKNYYVNTIVDDVDKYGYHVHSAYTPQRDPRSIPNDYDPGTPGGPVGIP
LHRPFATPRRVAGGNLTEADRHTTLDHTDDNGLVAGVDFSSINVQATGVD
DEPDVIKTDGRRVFTISSFTFSVVPVQDGGKADRRVGRLQLPTMRPVYLR
FEPDAQFNHEATVVYQINVKGETPRLVSTLYLEGSFVKSNQVDGVVRIVM
RFSPMRSALMYFPVGNVQPWQAEKWNREIVQYSSPGNWLPTYRVQRNGRE
QYGVYATCGEIYYPPNVFAGLDLFTVVTIPIGGFLEPSSSASIISTAETV
FITKKSMFVTTSEGLSKNSGLSSPRWGFNYHTAIHQFALSDAGASYVASN
SVNGSAISEFAMHEWNDNFFIATTDGATWWSGRDFRRTKVSAFVSNRDKR
QLVKVGEVGNLDVNERSSSLRYIEEAAYVVPSRAFEQAIYIIDISNPRAM
RVTGELELRGISTYLHPAGPGRVLGLGELSTAPTRHTTGVKVSLFDVGDT
TNPRELSSWTLWGEYYVERDVRAFLYWPRASVAVISMISDVLRFAGAIVL
NISESTMTERGRVTHKTTSGWDRGIRRNAIIGTEHLWSMTELTLQVNNLN
NLSKVEAQLPILLPSTP*
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mRNA from alignment at tig00004384_pilon:1531226..1533292-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8317.t1 ID=Gchil8317.t1|Name=Gchil8317.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2067bp|location=Sequence derived from alignment at tig00004384_pilon:1531226..1533292- (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCGCCAAATCCCTTTCAGAAACAGCCTCGAACCCAAAGGAGAAC
AATGGCCTTCTTCTTCAAGTCCATCTCCCTGGCTTTCCTCCTTTCCTTGC
TTGCCAACGCTGCCCATGCGCGCCTCATTAACAAGTTTGGCAACTGCCAG
GAGCTCAAAAACTACTACGTCAACACCATCGTCGATGACGTCGATAAATA
CGGCTACCATGTCCATAGCGCATACACTCCACAACGCGATCCGAGATCGA
TCCCGAATGATTATGATCCTGGAACCCCGGGTGGCCCCGTCGGAATTCCC
CTCCACCGCCCTTTCGCTACACCGCGGCGGGTAGCGGGCGGCAATCTCAC
CGAGGCGGATCGCCACACCACCTTGGATCACACCGATGACAATGGTCTTG
TCGCAGGCGTCGACTTTTCCTCAATCAACGTTCAGGCCACGGGTGTTGAC
GACGAGCCGGACGTTATCAAGACGGACGGCCGCCGTGTGTTCACCATCAG
CAGCTTCACTTTTTCCGTTGTGCCAGTGCAGGACGGAGGAAAAGCCGACC
GACGTGTGGGCCGGTTGCAGTTGCCCACCATGGTGCGCGATATGTTGATT
GAAGGTGACTTCGTGCTTGTCTTTGGCACCATCTACACTTAAAAGCGCCC
AGTATACCTTCGGTTCGAGCCTGACGCTCAGTTTAACCATGAAGCCACCG
TTGTGTACCAAATTAACGTCAAAGGTGAAACGCCGCGCCTAGTATCTACG
CTATACCTCGAGGGTAGCTTTGTCAAATCTAACCAAGTCGACGGCGTCGT
CCGCATTGTCATGCGCTTCAGCCCAATGCGATCTGCTTTGATGTACTTCC
CGGTCGGCAATGTGCAACCGTGGCAGGCCGAGAAATGGAATCGTGAGATC
GTCCAATATTCCAGCCCTGGCAACTGGCTGCCGACGTACCGTGTGCAGCG
CAATGGTCGCGAGCAATATGGTGTGTACGCAACGTGCGGTGAAATCTACT
ACCCGCCTAACGTTTTCGCGGGCCTCGACCTCTTCACAGTCGTCACTATC
CCCATTGGGGGATTTCTTGAGCCGTCCAGCTCGGCATCCATCATTTCGAC
CGCTGAAACGGTTTTCATCACGAAGAAATCGATGTTTGTGACGACAAGTG
AAGGACTCTCCAAAAATTCCGGCTTAAGCTCGCCGCGCTGGGGCTTCAAC
TACCACACAGCGATCCATCAGTTCGCGCTGTCAGACGCTGGCGCATCCTA
CGTCGCGAGTAATTCCGTGAATGGCAGTGCTATCAGCGAGTTTGCGATGC
ACGAGTGGAACGACAACTTCTTTATTGCGACGACGGACGGCGCAACCTGG
TGGTCTGGTCGCGATTTTCGGCGCACTAAGGTGAGCGCATTCGTGTCGAA
CCGAGATAAACGGCAGCTTGTGAAGGTTGGCGAGGTGGGAAACCTTGACG
TTAACGAGCGCAGCTCTTCCCTGCGGTACATTGAAGAAGCGGCATACGTT
GTTCCGTCCCGCGCGTTTGAACAAGCAATATACATCATCGATATTTCGAA
CCCACGCGCGATGCGCGTGACGGGTGAACTTGAGCTCCGCGGCATCAGCA
CGTACCTTCACCCAGCCGGACCGGGTCGCGTTCTCGGCTTAGGCGAGCTG
TCGACCGCGCCGACGAGACACACCACAGGCGTGAAAGTGTCATTGTTTGA
TGTGGGTGACACGACCAACCCCCGCGAGCTGTCATCCTGGACGCTATGGG
GAGAATACTATGTAGAACGGGATGTTCGCGCGTTCTTGTACTGGCCGCGC
GCGAGCGTGGCGGTGATTTCGATGATTTCTGATGTGCTGCGGTTCGCTGG
AGCGATAGTGCTGAATATATCCGAATCAACCATGACGGAGCGCGGCCGCG
TGACGCATAAGACAACTAGTGGGTGGGACCGTGGCATCCGGCGCAATGCG
ATCATTGGCACCGAGCACCTGTGGTCCATGACGGAGCTAACGCTCCAAGT
GAACAATCTGAATAATTTGAGCAAGGTCGAGGCACAGCTTCCCATTTTGC
TGCCCAGCACTCCATGA
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Coding sequence (CDS) from alignment at tig00004384_pilon:1531226..1533292-

>Gchil8317.t1 ID=Gchil8317.t1|Name=Gchil8317.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2004bp|location=Sequence derived from alignment at tig00004384_pilon:1531226..1533292- (Gracilaria chilensis NLEC103_M9 male)
ATGATCGCGCCAAATCCCTTTCAGAAACAGCCTCGAACCCAAAGGAGAAC
AATGGCCTTCTTCTTCAAGTCCATCTCCCTGGCTTTCCTCCTTTCCTTGC
TTGCCAACGCTGCCCATGCGCGCCTCATTAACAAGTTTGGCAACTGCCAG
GAGCTCAAAAACTACTACGTCAACACCATCGTCGATGACGTCGATAAATA
CGGCTACCATGTCCATAGCGCATACACTCCACAACGCGATCCGAGATCGA
TCCCGAATGATTATGATCCTGGAACCCCGGGTGGCCCCGTCGGAATTCCC
CTCCACCGCCCTTTCGCTACACCGCGGCGGGTAGCGGGCGGCAATCTCAC
CGAGGCGGATCGCCACACCACCTTGGATCACACCGATGACAATGGTCTTG
TCGCAGGCGTCGACTTTTCCTCAATCAACGTTCAGGCCACGGGTGTTGAC
GACGAGCCGGACGTTATCAAGACGGACGGCCGCCGTGTGTTCACCATCAG
CAGCTTCACTTTTTCCGTTGTGCCAGTGCAGGACGGAGGAAAAGCCGACC
GACGTGTGGGCCGGTTGCAGTTGCCCACCATGCGCCCAGTATACCTTCGG
TTCGAGCCTGACGCTCAGTTTAACCATGAAGCCACCGTTGTGTACCAAAT
TAACGTCAAAGGTGAAACGCCGCGCCTAGTATCTACGCTATACCTCGAGG
GTAGCTTTGTCAAATCTAACCAAGTCGACGGCGTCGTCCGCATTGTCATG
CGCTTCAGCCCAATGCGATCTGCTTTGATGTACTTCCCGGTCGGCAATGT
GCAACCGTGGCAGGCCGAGAAATGGAATCGTGAGATCGTCCAATATTCCA
GCCCTGGCAACTGGCTGCCGACGTACCGTGTGCAGCGCAATGGTCGCGAG
CAATATGGTGTGTACGCAACGTGCGGTGAAATCTACTACCCGCCTAACGT
TTTCGCGGGCCTCGACCTCTTCACAGTCGTCACTATCCCCATTGGGGGAT
TTCTTGAGCCGTCCAGCTCGGCATCCATCATTTCGACCGCTGAAACGGTT
TTCATCACGAAGAAATCGATGTTTGTGACGACAAGTGAAGGACTCTCCAA
AAATTCCGGCTTAAGCTCGCCGCGCTGGGGCTTCAACTACCACACAGCGA
TCCATCAGTTCGCGCTGTCAGACGCTGGCGCATCCTACGTCGCGAGTAAT
TCCGTGAATGGCAGTGCTATCAGCGAGTTTGCGATGCACGAGTGGAACGA
CAACTTCTTTATTGCGACGACGGACGGCGCAACCTGGTGGTCTGGTCGCG
ATTTTCGGCGCACTAAGGTGAGCGCATTCGTGTCGAACCGAGATAAACGG
CAGCTTGTGAAGGTTGGCGAGGTGGGAAACCTTGACGTTAACGAGCGCAG
CTCTTCCCTGCGGTACATTGAAGAAGCGGCATACGTTGTTCCGTCCCGCG
CGTTTGAACAAGCAATATACATCATCGATATTTCGAACCCACGCGCGATG
CGCGTGACGGGTGAACTTGAGCTCCGCGGCATCAGCACGTACCTTCACCC
AGCCGGACCGGGTCGCGTTCTCGGCTTAGGCGAGCTGTCGACCGCGCCGA
CGAGACACACCACAGGCGTGAAAGTGTCATTGTTTGATGTGGGTGACACG
ACCAACCCCCGCGAGCTGTCATCCTGGACGCTATGGGGAGAATACTATGT
AGAACGGGATGTTCGCGCGTTCTTGTACTGGCCGCGCGCGAGCGTGGCGG
TGATTTCGATGATTTCTGATGTGCTGCGGTTCGCTGGAGCGATAGTGCTG
AATATATCCGAATCAACCATGACGGAGCGCGGCCGCGTGACGCATAAGAC
AACTAGTGGGTGGGACCGTGGCATCCGGCGCAATGCGATCATTGGCACCG
AGCACCTGTGGTCCATGACGGAGCTAACGCTCCAAGTGAACAATCTGAAT
AATTTGAGCAAGGTCGAGGCACAGCTTCCCATTTTGCTGCCCAGCACTCC
ATGA
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