Gchil8159.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil8159.t1
Unique Name	Gchil8159.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	575

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004384_pilon	contig	tig00004384_pilon:381971..383695 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3659.XP_004164641.1
PFAMs	DUF382,PSP
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K12829
KEGG Pathway	ko03040,map03040
KEGG Module	M00352
GOs	GO:0000375,GO:0000377,GO:0000398,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071011,GO:0071013,GO:0071704,GO:0090304,GO:0097525,GO:0120114,GO:1901360,GO:1902494,GO:1990904
Evalue	3.09e-96
EggNOG OGs	COG5182@1\|root,KOG2330@2759\|Eukaryota,37RXM@33090\|Viridiplantae,3GENG@35493\|Streptophyta,4JMBU@91835\|fabids
Description	Splicing factor 3B subunit
COG category	A
BRITE	ko00000,ko00001,ko00002,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil8159	Gchil8159	Gracilaria chilensis NLEC103_M9 male	gene	tig00004384_pilon 381971..383695 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8159.t1.start1	Gchil8159.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004384_pilon 381971..381973 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8159.t1.CDS1	Gchil8159.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004384_pilon 381971..383695 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8159.t1.exon1	Gchil8159.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004384_pilon 381971..383695 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8159.t1.stop1	Gchil8159.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004384_pilon 383693..383695 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil8159.t1	Gchil8159.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004384_pilon 381971..383695 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004384_pilon:381971..383695+
coding sequence from alignment at tig00004384_pilon:381971..383695+

mRNA sequence

>Gchil8159.t1 ID=Gchil8159.t1|Name=Gchil8159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=575bp
MIPDRGTDDLEAAKAAALRELFSDTGGDSAQTTNTEGNTKRSSKKTRRRR
RPKSIAKEATTAQKQELEDGVETAVEYVPERIMALDDSTTSKHDGVYQDA
NVENIDDVISSMRRFMQRGIEERHDENEQRSDAEVNGFKSVNKKVQTEGT
SEAGEAKLVENEAVESAKDETQDKPLSRKKQKELRRYQISVLKSLTDRPE
LVDSWDVTAPDPFLLVHLKTWPNSVQVPSNWRQKRKYLQNKRGMEKKAFQ
LPAYIADTGVGEMRSAQIEADQKKSLKQRQREKMRAKTGRGVDIDHSRLR
DAFFKYQTKPRLTSQGDIYYELRELEVDGSRFRPGFLSEELRAALGVSEG
DPPLWLVNMQRYGPPPGYPGLKIPGVNAPIPKGASYGYHIGGWGKPPVDE
YGRPIYGDVFGEGLEFGKQDARFDLNDHEKKKLWGDLRKPGSKVTVAVGV
EEESEDSDGNEGRDDAKQEKEAPRGATSRETHRMVSLPDEKNTRTGENPQ
QGTRQDSFYTVLEDRRVSVGQDGILGSSHVYDINRQSGEKAHAGSSRDKT
SEKRPRESVEDKRDGPGKRSKFKF*

spliced messenger RNA

>Gchil8159.t1 ID=Gchil8159.t1|Name=Gchil8159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00004384_pilon:381971..383695+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCAGACCGAGGCACGGATGATTTAGAAGCCGCAAAAGCCGCAGC
ACTACGAGAGTTGTTTTCTGACACCGGCGGCGACTCAGCACAGACAACGA
ACACGGAGGGGAACACGAAACGCTCATCCAAGAAAACGCGCCGAAGAAGA
CGGCCAAAATCGATTGCTAAGGAAGCGACGACAGCACAAAAACAAGAGTT
GGAAGATGGTGTAGAAACTGCTGTTGAGTACGTTCCAGAGCGAATCATGG
CACTTGATGATTCGACTACATCGAAGCACGATGGCGTATATCAAGATGCT
AACGTCGAAAACATCGATGATGTCATAAGTTCTATGCGACGCTTCATGCA
GCGTGGAATAGAAGAACGTCACGACGAAAACGAGCAACGAAGCGATGCTG
AAGTAAATGGCTTCAAATCGGTGAACAAAAAGGTCCAAACCGAAGGTACA
TCAGAAGCTGGGGAAGCGAAGCTTGTCGAAAACGAGGCCGTCGAAAGTGC
CAAAGATGAAACGCAAGACAAGCCCCTGTCGCGAAAGAAACAGAAGGAAC
TTCGACGCTACCAGATATCAGTGCTCAAATCGCTGACAGATCGTCCTGAA
CTTGTGGATTCCTGGGATGTAACTGCCCCCGATCCCTTTCTTTTAGTACA
TTTAAAAACGTGGCCCAACTCGGTGCAGGTACCTAGCAATTGGCGTCAGA
AACGTAAGTACTTGCAAAACAAACGAGGGATGGAGAAAAAGGCATTTCAA
CTCCCCGCGTACATTGCCGACACCGGGGTCGGCGAAATGCGATCGGCCCA
GATTGAAGCTGACCAGAAAAAGAGTTTGAAGCAGAGGCAACGAGAGAAAA
TGAGAGCAAAGACTGGGCGAGGCGTCGACATTGATCACTCAAGATTACGA
GATGCTTTTTTTAAGTACCAGACAAAACCAAGACTCACTTCACAAGGCGA
TATATATTATGAGTTACGGGAGCTGGAAGTTGACGGTTCACGCTTTCGTC
CTGGCTTTCTGAGTGAAGAACTCAGGGCTGCTCTCGGAGTTTCCGAGGGC
GACCCGCCGCTCTGGCTGGTAAATATGCAGAGATATGGCCCACCACCAGG
ATACCCAGGGCTGAAAATCCCGGGAGTTAATGCACCGATACCGAAGGGCG
CCAGTTACGGATATCATATTGGAGGGTGGGGGAAGCCACCAGTTGATGAA
TATGGGCGGCCTATCTACGGAGATGTGTTTGGAGAAGGATTAGAATTCGG
GAAGCAGGACGCACGATTTGACTTGAATGATCACGAGAAGAAGAAGCTGT
GGGGTGATTTAAGAAAACCAGGCAGCAAAGTAACTGTGGCCGTCGGAGTT
GAGGAGGAATCGGAAGATAGTGACGGGAACGAGGGACGTGATGATGCAAA
GCAAGAGAAAGAAGCGCCACGAGGAGCAACAAGCAGGGAAACTCACAGGA
TGGTCTCGTTACCGGATGAGAAAAACACCAGAACAGGTGAAAATCCTCAG
CAAGGTACGCGACAAGATAGCTTTTACACCGTTTTGGAGGATAGAAGGGT
GTCAGTTGGGCAGGACGGCATACTGGGGTCTTCGCATGTCTACGACATAA
ACAGACAAAGCGGGGAAAAAGCGCATGCTGGTTCGTCACGGGACAAAACC
AGCGAAAAAAGACCACGAGAGAGTGTTGAAGATAAGCGTGATGGGCCAGG
TAAGCGGAGTAAGTTCAAGTTCTAA

protein sequence of Gchil8159.t1

>Gchil8159.t1 ID=Gchil8159.t1|Name=Gchil8159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=575bp
MIPDRGTDDLEAAKAAALRELFSDTGGDSAQTTNTEGNTKRSSKKTRRRR
RPKSIAKEATTAQKQELEDGVETAVEYVPERIMALDDSTTSKHDGVYQDA
NVENIDDVISSMRRFMQRGIEERHDENEQRSDAEVNGFKSVNKKVQTEGT
SEAGEAKLVENEAVESAKDETQDKPLSRKKQKELRRYQISVLKSLTDRPE
LVDSWDVTAPDPFLLVHLKTWPNSVQVPSNWRQKRKYLQNKRGMEKKAFQ
LPAYIADTGVGEMRSAQIEADQKKSLKQRQREKMRAKTGRGVDIDHSRLR
DAFFKYQTKPRLTSQGDIYYELRELEVDGSRFRPGFLSEELRAALGVSEG
DPPLWLVNMQRYGPPPGYPGLKIPGVNAPIPKGASYGYHIGGWGKPPVDE
YGRPIYGDVFGEGLEFGKQDARFDLNDHEKKKLWGDLRKPGSKVTVAVGV
EEESEDSDGNEGRDDAKQEKEAPRGATSRETHRMVSLPDEKNTRTGENPQ
QGTRQDSFYTVLEDRRVSVGQDGILGSSHVYDINRQSGEKAHAGSSRDKT
SEKRPRESVEDKRDGPGKRSKFKF*

mRNA from alignment at tig00004384_pilon:381971..383695+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil8159.t1 ID=Gchil8159.t1|Name=Gchil8159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1725bp|location=Sequence derived from alignment at tig00004384_pilon:381971..383695+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTCCAGACCGAGGCACGGATGATTTAGAAGCCGCAAAAGCCGCAGC
ACTACGAGAGTTGTTTTCTGACACCGGCGGCGACTCAGCACAGACAACGA
ACACGGAGGGGAACACGAAACGCTCATCCAAGAAAACGCGCCGAAGAAGA
CGGCCAAAATCGATTGCTAAGGAAGCGACGACAGCACAAAAACAAGAGTT
GGAAGATGGTGTAGAAACTGCTGTTGAGTACGTTCCAGAGCGAATCATGG
CACTTGATGATTCGACTACATCGAAGCACGATGGCGTATATCAAGATGCT
AACGTCGAAAACATCGATGATGTCATAAGTTCTATGCGACGCTTCATGCA
GCGTGGAATAGAAGAACGTCACGACGAAAACGAGCAACGAAGCGATGCTG
AAGTAAATGGCTTCAAATCGGTGAACAAAAAGGTCCAAACCGAAGGTACA
TCAGAAGCTGGGGAAGCGAAGCTTGTCGAAAACGAGGCCGTCGAAAGTGC
CAAAGATGAAACGCAAGACAAGCCCCTGTCGCGAAAGAAACAGAAGGAAC
TTCGACGCTACCAGATATCAGTGCTCAAATCGCTGACAGATCGTCCTGAA
CTTGTGGATTCCTGGGATGTAACTGCCCCCGATCCCTTTCTTTTAGTACA
TTTAAAAACGTGGCCCAACTCGGTGCAGGTACCTAGCAATTGGCGTCAGA
AACGTAAGTACTTGCAAAACAAACGAGGGATGGAGAAAAAGGCATTTCAA
CTCCCCGCGTACATTGCCGACACCGGGGTCGGCGAAATGCGATCGGCCCA
GATTGAAGCTGACCAGAAAAAGAGTTTGAAGCAGAGGCAACGAGAGAAAA
TGAGAGCAAAGACTGGGCGAGGCGTCGACATTGATCACTCAAGATTACGA
GATGCTTTTTTTAAGTACCAGACAAAACCAAGACTCACTTCACAAGGCGA
TATATATTATGAGTTACGGGAGCTGGAAGTTGACGGTTCACGCTTTCGTC
CTGGCTTTCTGAGTGAAGAACTCAGGGCTGCTCTCGGAGTTTCCGAGGGC
GACCCGCCGCTCTGGCTGGTAAATATGCAGAGATATGGCCCACCACCAGG
ATACCCAGGGCTGAAAATCCCGGGAGTTAATGCACCGATACCGAAGGGCG
CCAGTTACGGATATCATATTGGAGGGTGGGGGAAGCCACCAGTTGATGAA
TATGGGCGGCCTATCTACGGAGATGTGTTTGGAGAAGGATTAGAATTCGG
GAAGCAGGACGCACGATTTGACTTGAATGATCACGAGAAGAAGAAGCTGT
GGGGTGATTTAAGAAAACCAGGCAGCAAAGTAACTGTGGCCGTCGGAGTT
GAGGAGGAATCGGAAGATAGTGACGGGAACGAGGGACGTGATGATGCAAA
GCAAGAGAAAGAAGCGCCACGAGGAGCAACAAGCAGGGAAACTCACAGGA
TGGTCTCGTTACCGGATGAGAAAAACACCAGAACAGGTGAAAATCCTCAG
CAAGGTACGCGACAAGATAGCTTTTACACCGTTTTGGAGGATAGAAGGGT
GTCAGTTGGGCAGGACGGCATACTGGGGTCTTCGCATGTCTACGACATAA
ACAGACAAAGCGGGGAAAAAGCGCATGCTGGTTCGTCACGGGACAAAACC
AGCGAAAAAAGACCACGAGAGAGTGTTGAAGATAAGCGTGATGGGCCAGG
TAAGCGGAGTAAGTTCAAGTTCTAA

Coding sequence (CDS) from alignment at tig00004384_pilon:381971..383695+

>Gchil8159.t1 ID=Gchil8159.t1|Name=Gchil8159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1725bp|location=Sequence derived from alignment at tig00004384_pilon:381971..383695+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTCCAGACCGAGGCACGGATGATTTAGAAGCCGCAAAAGCCGCAGC
ACTACGAGAGTTGTTTTCTGACACCGGCGGCGACTCAGCACAGACAACGA
ACACGGAGGGGAACACGAAACGCTCATCCAAGAAAACGCGCCGAAGAAGA
CGGCCAAAATCGATTGCTAAGGAAGCGACGACAGCACAAAAACAAGAGTT
GGAAGATGGTGTAGAAACTGCTGTTGAGTACGTTCCAGAGCGAATCATGG
CACTTGATGATTCGACTACATCGAAGCACGATGGCGTATATCAAGATGCT
AACGTCGAAAACATCGATGATGTCATAAGTTCTATGCGACGCTTCATGCA
GCGTGGAATAGAAGAACGTCACGACGAAAACGAGCAACGAAGCGATGCTG
AAGTAAATGGCTTCAAATCGGTGAACAAAAAGGTCCAAACCGAAGGTACA
TCAGAAGCTGGGGAAGCGAAGCTTGTCGAAAACGAGGCCGTCGAAAGTGC
CAAAGATGAAACGCAAGACAAGCCCCTGTCGCGAAAGAAACAGAAGGAAC
TTCGACGCTACCAGATATCAGTGCTCAAATCGCTGACAGATCGTCCTGAA
CTTGTGGATTCCTGGGATGTAACTGCCCCCGATCCCTTTCTTTTAGTACA
TTTAAAAACGTGGCCCAACTCGGTGCAGGTACCTAGCAATTGGCGTCAGA
AACGTAAGTACTTGCAAAACAAACGAGGGATGGAGAAAAAGGCATTTCAA
CTCCCCGCGTACATTGCCGACACCGGGGTCGGCGAAATGCGATCGGCCCA
GATTGAAGCTGACCAGAAAAAGAGTTTGAAGCAGAGGCAACGAGAGAAAA
TGAGAGCAAAGACTGGGCGAGGCGTCGACATTGATCACTCAAGATTACGA
GATGCTTTTTTTAAGTACCAGACAAAACCAAGACTCACTTCACAAGGCGA
TATATATTATGAGTTACGGGAGCTGGAAGTTGACGGTTCACGCTTTCGTC
CTGGCTTTCTGAGTGAAGAACTCAGGGCTGCTCTCGGAGTTTCCGAGGGC
GACCCGCCGCTCTGGCTGGTAAATATGCAGAGATATGGCCCACCACCAGG
ATACCCAGGGCTGAAAATCCCGGGAGTTAATGCACCGATACCGAAGGGCG
CCAGTTACGGATATCATATTGGAGGGTGGGGGAAGCCACCAGTTGATGAA
TATGGGCGGCCTATCTACGGAGATGTGTTTGGAGAAGGATTAGAATTCGG
GAAGCAGGACGCACGATTTGACTTGAATGATCACGAGAAGAAGAAGCTGT
GGGGTGATTTAAGAAAACCAGGCAGCAAAGTAACTGTGGCCGTCGGAGTT
GAGGAGGAATCGGAAGATAGTGACGGGAACGAGGGACGTGATGATGCAAA
GCAAGAGAAAGAAGCGCCACGAGGAGCAACAAGCAGGGAAACTCACAGGA
TGGTCTCGTTACCGGATGAGAAAAACACCAGAACAGGTGAAAATCCTCAG
CAAGGTACGCGACAAGATAGCTTTTACACCGTTTTGGAGGATAGAAGGGT
GTCAGTTGGGCAGGACGGCATACTGGGGTCTTCGCATGTCTACGACATAA
ACAGACAAAGCGGGGAAAAAGCGCATGCTGGTTCGTCACGGGACAAAACC
AGCGAAAAAAGACCACGAGAGAGTGTTGAAGATAAGCGTGATGGGCCAGG
TAAGCGGAGTAAGTTCAAGTTCTAA