Gchil3179.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3179.t1
Unique NameGchil3179.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:622913..623992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog937777.Deipe_0280
PFAMsGlu_cyclase_2
Max annot lvl1297|Deinococcus-Thermus
KEGG koko:K00683
Evalue1.24e-58
EggNOG OGsCOG3823@1|root,COG3823@2|Bacteria,1WM89@1297|Deinococcus-Thermus
EC2.3.2.5
DescriptionGlutamine cyclotransferase
COG categoryM
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3179Gchil3179Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 622913..623992 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3179.t1.stop1Gchil3179.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 622913..622915 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3179.t1.CDS1Gchil3179.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 622913..623992 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3179.t1.exon1Gchil3179.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 622913..623992 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3179.t1.start1Gchil3179.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 623990..623992 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3179.t1Gchil3179.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 622913..623992 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3179.t1 ID=Gchil3179.t1|Name=Gchil3179.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp
MKRRRHIKAKPLFVRNIITARQRYLLSPIQRSKTAILLFGISALLCATAY
VLQSKRVWSKLKASARRSAPSAFSWFSNTVFFQSGNTKMAPVFSAKVVKE
FDHDLNAFTQGLVFFEHNMYESTGLYGASSLRRVHVSTGKLLDLHRLQSS
DFGEGLTVVGKDGSLLMQALWKVGKGYVYDRVSFNRLFGFSFEGDAWGLA
SLPEDRNKIFMSDGTSSIKVFHLEGSTLNLKRQFTVFDGPKQVGLLNELE
VVGNELWANVWMSDFIVRIDPESGKVNSWIDLRGTLRESTIPNGHTVDVL
NGIAYDEASSSVYVTGKYWPKLFSIDLSGDFVAENISDVTNAFFLNPEQV
EHIHKHVIA*
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spliced messenger RNA

>Gchil3179.t1 ID=Gchil3179.t1|Name=Gchil3179.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00004382_pilon:622913..623992- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAAGGAGGAGGCATATTAAAGCGAAGCCGCTTTTCGTCCGAAACAT
AATCACCGCCAGACAACGCTATCTGTTATCTCCAATTCAGCGCAGCAAGA
CTGCAATACTGCTTTTCGGAATTTCTGCTTTACTCTGCGCCACCGCATAC
GTTTTGCAATCGAAGCGCGTTTGGAGCAAACTCAAAGCGTCTGCTCGACG
CAGTGCTCCTTCTGCATTCTCATGGTTCTCGAACACTGTCTTCTTCCAAT
CTGGAAACACAAAAATGGCACCTGTCTTCAGCGCAAAAGTTGTCAAAGAA
TTCGACCATGATCTCAATGCGTTCACACAAGGGTTGGTGTTTTTCGAACA
CAATATGTATGAATCTACTGGATTGTACGGTGCTTCGAGTCTCCGCAGAG
TACATGTCTCTACAGGCAAGCTTCTCGATCTTCATCGATTGCAGTCCAGT
GATTTCGGCGAGGGCTTGACTGTTGTCGGAAAAGACGGTTCTTTGCTCAT
GCAAGCACTGTGGAAAGTGGGCAAGGGCTATGTTTATGATAGAGTTTCGT
TCAATCGTCTGTTTGGCTTTTCTTTTGAAGGAGACGCCTGGGGGTTGGCT
TCTCTTCCCGAAGATCGAAATAAAATATTTATGAGCGATGGTACATCATC
CATAAAGGTTTTTCATCTGGAAGGAAGCACGTTAAACTTGAAACGTCAAT
TTACTGTGTTCGACGGGCCAAAGCAAGTCGGCTTGCTCAACGAGTTGGAG
GTTGTTGGAAACGAATTATGGGCCAATGTGTGGATGTCCGATTTTATTGT
CCGTATTGATCCGGAAAGTGGCAAAGTGAATAGTTGGATTGATCTCAGGG
GAACTCTGCGGGAAAGCACCATACCCAACGGCCACACTGTTGATGTTCTC
AACGGCATTGCCTATGACGAGGCATCGTCCTCCGTTTATGTCACAGGCAA
GTATTGGCCCAAACTCTTTTCAATTGATCTCAGTGGTGACTTCGTTGCGG
AAAACATTTCGGACGTCACCAACGCTTTTTTTTTGAATCCGGAGCAAGTA
GAGCACATACACAAGCACGTGATTGCGTGA
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protein sequence of Gchil3179.t1

>Gchil3179.t1 ID=Gchil3179.t1|Name=Gchil3179.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=360bp
MKRRRHIKAKPLFVRNIITARQRYLLSPIQRSKTAILLFGISALLCATAY
VLQSKRVWSKLKASARRSAPSAFSWFSNTVFFQSGNTKMAPVFSAKVVKE
FDHDLNAFTQGLVFFEHNMYESTGLYGASSLRRVHVSTGKLLDLHRLQSS
DFGEGLTVVGKDGSLLMQALWKVGKGYVYDRVSFNRLFGFSFEGDAWGLA
SLPEDRNKIFMSDGTSSIKVFHLEGSTLNLKRQFTVFDGPKQVGLLNELE
VVGNELWANVWMSDFIVRIDPESGKVNSWIDLRGTLRESTIPNGHTVDVL
NGIAYDEASSSVYVTGKYWPKLFSIDLSGDFVAENISDVTNAFFLNPEQV
EHIHKHVIA*
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mRNA from alignment at tig00004382_pilon:622913..623992-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3179.t1 ID=Gchil3179.t1|Name=Gchil3179.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00004382_pilon:622913..623992- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAGGAGGAGGCATATTAAAGCGAAGCCGCTTTTCGTCCGAAACAT
AATCACCGCCAGACAACGCTATCTGTTATCTCCAATTCAGCGCAGCAAGA
CTGCAATACTGCTTTTCGGAATTTCTGCTTTACTCTGCGCCACCGCATAC
GTTTTGCAATCGAAGCGCGTTTGGAGCAAACTCAAAGCGTCTGCTCGACG
CAGTGCTCCTTCTGCATTCTCATGGTTCTCGAACACTGTCTTCTTCCAAT
CTGGAAACACAAAAATGGCACCTGTCTTCAGCGCAAAAGTTGTCAAAGAA
TTCGACCATGATCTCAATGCGTTCACACAAGGGTTGGTGTTTTTCGAACA
CAATATGTATGAATCTACTGGATTGTACGGTGCTTCGAGTCTCCGCAGAG
TACATGTCTCTACAGGCAAGCTTCTCGATCTTCATCGATTGCAGTCCAGT
GATTTCGGCGAGGGCTTGACTGTTGTCGGAAAAGACGGTTCTTTGCTCAT
GCAAGCACTGTGGAAAGTGGGCAAGGGCTATGTTTATGATAGAGTTTCGT
TCAATCGTCTGTTTGGCTTTTCTTTTGAAGGAGACGCCTGGGGGTTGGCT
TCTCTTCCCGAAGATCGAAATAAAATATTTATGAGCGATGGTACATCATC
CATAAAGGTTTTTCATCTGGAAGGAAGCACGTTAAACTTGAAACGTCAAT
TTACTGTGTTCGACGGGCCAAAGCAAGTCGGCTTGCTCAACGAGTTGGAG
GTTGTTGGAAACGAATTATGGGCCAATGTGTGGATGTCCGATTTTATTGT
CCGTATTGATCCGGAAAGTGGCAAAGTGAATAGTTGGATTGATCTCAGGG
GAACTCTGCGGGAAAGCACCATACCCAACGGCCACACTGTTGATGTTCTC
AACGGCATTGCCTATGACGAGGCATCGTCCTCCGTTTATGTCACAGGCAA
GTATTGGCCCAAACTCTTTTCAATTGATCTCAGTGGTGACTTCGTTGCGG
AAAACATTTCGGACGTCACCAACGCTTTTTTTTTGAATCCGGAGCAAGTA
GAGCACATACACAAGCACGTGATTGCGTGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:622913..623992-

>Gchil3179.t1 ID=Gchil3179.t1|Name=Gchil3179.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00004382_pilon:622913..623992- (Gracilaria chilensis NLEC103_M9 male)
ATGAAAAGGAGGAGGCATATTAAAGCGAAGCCGCTTTTCGTCCGAAACAT
AATCACCGCCAGACAACGCTATCTGTTATCTCCAATTCAGCGCAGCAAGA
CTGCAATACTGCTTTTCGGAATTTCTGCTTTACTCTGCGCCACCGCATAC
GTTTTGCAATCGAAGCGCGTTTGGAGCAAACTCAAAGCGTCTGCTCGACG
CAGTGCTCCTTCTGCATTCTCATGGTTCTCGAACACTGTCTTCTTCCAAT
CTGGAAACACAAAAATGGCACCTGTCTTCAGCGCAAAAGTTGTCAAAGAA
TTCGACCATGATCTCAATGCGTTCACACAAGGGTTGGTGTTTTTCGAACA
CAATATGTATGAATCTACTGGATTGTACGGTGCTTCGAGTCTCCGCAGAG
TACATGTCTCTACAGGCAAGCTTCTCGATCTTCATCGATTGCAGTCCAGT
GATTTCGGCGAGGGCTTGACTGTTGTCGGAAAAGACGGTTCTTTGCTCAT
GCAAGCACTGTGGAAAGTGGGCAAGGGCTATGTTTATGATAGAGTTTCGT
TCAATCGTCTGTTTGGCTTTTCTTTTGAAGGAGACGCCTGGGGGTTGGCT
TCTCTTCCCGAAGATCGAAATAAAATATTTATGAGCGATGGTACATCATC
CATAAAGGTTTTTCATCTGGAAGGAAGCACGTTAAACTTGAAACGTCAAT
TTACTGTGTTCGACGGGCCAAAGCAAGTCGGCTTGCTCAACGAGTTGGAG
GTTGTTGGAAACGAATTATGGGCCAATGTGTGGATGTCCGATTTTATTGT
CCGTATTGATCCGGAAAGTGGCAAAGTGAATAGTTGGATTGATCTCAGGG
GAACTCTGCGGGAAAGCACCATACCCAACGGCCACACTGTTGATGTTCTC
AACGGCATTGCCTATGACGAGGCATCGTCCTCCGTTTATGTCACAGGCAA
GTATTGGCCCAAACTCTTTTCAATTGATCTCAGTGGTGACTTCGTTGCGG
AAAACATTTCGGACGTCACCAACGCTTTTTTTTTGAATCCGGAGCAAGTA
GAGCACATACACAAGCACGTGATTGCGTGA
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