Gchil3172.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3172.t1
Unique NameGchil3172.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length559
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:609085..610761 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3172Gchil3172Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 609085..610761 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3172.t1.stop1Gchil3172.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 609085..609087 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3172.t1.CDS1Gchil3172.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 609085..610761 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3172.t1.exon1Gchil3172.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 609085..610761 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3172.t1.start1Gchil3172.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 610759..610761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3172.t1Gchil3172.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 609085..610761 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3172.t1 ID=Gchil3172.t1|Name=Gchil3172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=559bp
MSTTFASSSSPHPANMLSLPLASPPDPLAAYDPLTLLDDSFQPYASRQVN
PALPRLSPPHLSVPSYSQSLPSNNPVPTRNPRPPLPSPPTAANGPSVLSP
RAYGLSPRLPSALPPSASPRVVEPVTPDRQPLPFSADDAAVLCERVPIGT
VDERAAAFIFDSVPRRPLSCPSSTVPTADASTQQEKFSAMSLQLPIDPSL
TAPPPQVHSLSMPSHQLTTSSSLVMDTSSATAAASAAAVTASNSAQNALS
PFGLSTRQSTAAAIAAAVDNPAFHPWNKDNDQVQNIPSSIPKTEPTSNSA
FAATTTAAAVAAAQAASSLCAATHRPAPASAVMSSMSLPDPSLFPSPAVA
QSLCTFTQLPDFLQAPPTTSSISDQSMQITRPRAEPTSNRHVSDESSLRK
PVCIPKRPMLHPLGVSTTIVAADTTSDRLRCQMCGQRFARRSNLFKHLRS
VHDDRRRFACRSCPYKFKRQDHLLKHMRSVHDRMRNFVCDICGFGFAEKF
NRDKHRRSIHMTKRAFQCPCGAYFQDREKMLKCLRCRQPPNTDPATADCV
NGVGAATL*
back to top

spliced messenger RNA

>Gchil3172.t1 ID=Gchil3172.t1|Name=Gchil3172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00004382_pilon:609085..610761- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCACCACTTTCGCCTCCTCTTCGTCTCCGCACCCTGCAAACATGCT
TTCGCTCCCGTTAGCTTCTCCACCCGATCCGCTCGCCGCCTACGACCCCC
TCACGCTTTTGGACGACTCCTTCCAGCCCTATGCATCACGTCAAGTCAAC
CCCGCCCTGCCGCGACTATCACCGCCTCATCTTAGCGTTCCTTCATACTC
ACAGTCACTCCCCTCCAACAACCCCGTCCCAACCAGGAATCCTCGCCCTC
CTCTTCCGTCCCCGCCCACCGCCGCCAATGGCCCCTCCGTCCTTTCGCCG
CGTGCGTATGGCCTTTCTCCCCGACTGCCGTCTGCGCTGCCGCCCTCCGC
CTCGCCGCGCGTCGTTGAGCCCGTCACCCCTGACCGTCAGCCCCTGCCGT
TTTCCGCCGATGACGCCGCTGTGCTTTGCGAACGCGTCCCCATCGGCACC
GTCGACGAGCGTGCCGCTGCTTTCATCTTTGACAGCGTTCCGCGCCGTCC
CCTGTCTTGTCCCTCGTCAACCGTCCCTACCGCCGATGCCTCCACTCAAC
AGGAAAAGTTTAGTGCCATGTCGCTACAACTTCCGATCGACCCCTCCCTC
ACGGCGCCCCCGCCTCAGGTGCATTCTCTGTCCATGCCCTCGCACCAGCT
TACCACGTCGTCCTCCCTCGTGATGGACACCTCTTCAGCCACTGCCGCTG
CTTCTGCCGCCGCTGTGACGGCATCGAACTCCGCCCAGAATGCGCTTTCC
CCGTTCGGTCTTTCCACTCGTCAGAGCACCGCCGCTGCAATAGCTGCAGC
TGTCGATAACCCAGCATTTCATCCGTGGAACAAGGATAATGACCAAGTAC
AAAACATACCGTCGTCCATTCCCAAAACCGAGCCCACATCCAATTCGGCT
TTTGCAGCCACCACCACCGCTGCTGCCGTGGCTGCGGCTCAAGCGGCATC
ATCTTTGTGCGCTGCTACTCATCGTCCTGCACCTGCATCAGCTGTGATGT
CTTCCATGTCGCTGCCGGATCCTTCTTTGTTTCCGTCGCCAGCTGTGGCG
CAATCGTTGTGCACGTTCACACAGCTTCCTGATTTTCTACAAGCGCCACC
TACCACCAGCTCTATTAGTGATCAGTCTATGCAGATTACGCGTCCGCGAG
CGGAACCGACCAGCAATCGGCACGTTAGCGACGAGTCGTCCTTGAGAAAG
CCCGTTTGCATCCCAAAGCGCCCCATGTTACACCCGCTGGGTGTCTCTAC
AACTATCGTCGCCGCGGACACCACATCCGACCGATTACGTTGTCAAATGT
GTGGACAACGATTTGCTAGACGCTCCAATCTGTTCAAACATTTGCGCTCA
GTTCATGATGATCGCCGACGCTTTGCATGTCGCTCATGTCCTTACAAATT
TAAACGCCAGGATCATTTGCTCAAGCACATGAGGTCGGTTCACGATAGAA
TGAGAAACTTTGTCTGTGACATATGTGGCTTTGGTTTTGCCGAAAAGTTT
AATCGCGACAAGCATCGACGGTCCATTCACATGACCAAACGAGCCTTCCA
GTGCCCGTGCGGCGCATATTTCCAGGACAGGGAGAAGATGCTCAAGTGTC
TGAGATGCAGGCAGCCTCCAAACACCGACCCCGCAACAGCAGATTGCGTG
AATGGTGTGGGAGCTGCCACCTTGTGA
back to top

protein sequence of Gchil3172.t1

>Gchil3172.t1 ID=Gchil3172.t1|Name=Gchil3172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=559bp
MSTTFASSSSPHPANMLSLPLASPPDPLAAYDPLTLLDDSFQPYASRQVN
PALPRLSPPHLSVPSYSQSLPSNNPVPTRNPRPPLPSPPTAANGPSVLSP
RAYGLSPRLPSALPPSASPRVVEPVTPDRQPLPFSADDAAVLCERVPIGT
VDERAAAFIFDSVPRRPLSCPSSTVPTADASTQQEKFSAMSLQLPIDPSL
TAPPPQVHSLSMPSHQLTTSSSLVMDTSSATAAASAAAVTASNSAQNALS
PFGLSTRQSTAAAIAAAVDNPAFHPWNKDNDQVQNIPSSIPKTEPTSNSA
FAATTTAAAVAAAQAASSLCAATHRPAPASAVMSSMSLPDPSLFPSPAVA
QSLCTFTQLPDFLQAPPTTSSISDQSMQITRPRAEPTSNRHVSDESSLRK
PVCIPKRPMLHPLGVSTTIVAADTTSDRLRCQMCGQRFARRSNLFKHLRS
VHDDRRRFACRSCPYKFKRQDHLLKHMRSVHDRMRNFVCDICGFGFAEKF
NRDKHRRSIHMTKRAFQCPCGAYFQDREKMLKCLRCRQPPNTDPATADCV
NGVGAATL*
back to top

mRNA from alignment at tig00004382_pilon:609085..610761-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3172.t1 ID=Gchil3172.t1|Name=Gchil3172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1677bp|location=Sequence derived from alignment at tig00004382_pilon:609085..610761- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCACCACTTTCGCCTCCTCTTCGTCTCCGCACCCTGCAAACATGCT
TTCGCTCCCGTTAGCTTCTCCACCCGATCCGCTCGCCGCCTACGACCCCC
TCACGCTTTTGGACGACTCCTTCCAGCCCTATGCATCACGTCAAGTCAAC
CCCGCCCTGCCGCGACTATCACCGCCTCATCTTAGCGTTCCTTCATACTC
ACAGTCACTCCCCTCCAACAACCCCGTCCCAACCAGGAATCCTCGCCCTC
CTCTTCCGTCCCCGCCCACCGCCGCCAATGGCCCCTCCGTCCTTTCGCCG
CGTGCGTATGGCCTTTCTCCCCGACTGCCGTCTGCGCTGCCGCCCTCCGC
CTCGCCGCGCGTCGTTGAGCCCGTCACCCCTGACCGTCAGCCCCTGCCGT
TTTCCGCCGATGACGCCGCTGTGCTTTGCGAACGCGTCCCCATCGGCACC
GTCGACGAGCGTGCCGCTGCTTTCATCTTTGACAGCGTTCCGCGCCGTCC
CCTGTCTTGTCCCTCGTCAACCGTCCCTACCGCCGATGCCTCCACTCAAC
AGGAAAAGTTTAGTGCCATGTCGCTACAACTTCCGATCGACCCCTCCCTC
ACGGCGCCCCCGCCTCAGGTGCATTCTCTGTCCATGCCCTCGCACCAGCT
TACCACGTCGTCCTCCCTCGTGATGGACACCTCTTCAGCCACTGCCGCTG
CTTCTGCCGCCGCTGTGACGGCATCGAACTCCGCCCAGAATGCGCTTTCC
CCGTTCGGTCTTTCCACTCGTCAGAGCACCGCCGCTGCAATAGCTGCAGC
TGTCGATAACCCAGCATTTCATCCGTGGAACAAGGATAATGACCAAGTAC
AAAACATACCGTCGTCCATTCCCAAAACCGAGCCCACATCCAATTCGGCT
TTTGCAGCCACCACCACCGCTGCTGCCGTGGCTGCGGCTCAAGCGGCATC
ATCTTTGTGCGCTGCTACTCATCGTCCTGCACCTGCATCAGCTGTGATGT
CTTCCATGTCGCTGCCGGATCCTTCTTTGTTTCCGTCGCCAGCTGTGGCG
CAATCGTTGTGCACGTTCACACAGCTTCCTGATTTTCTACAAGCGCCACC
TACCACCAGCTCTATTAGTGATCAGTCTATGCAGATTACGCGTCCGCGAG
CGGAACCGACCAGCAATCGGCACGTTAGCGACGAGTCGTCCTTGAGAAAG
CCCGTTTGCATCCCAAAGCGCCCCATGTTACACCCGCTGGGTGTCTCTAC
AACTATCGTCGCCGCGGACACCACATCCGACCGATTACGTTGTCAAATGT
GTGGACAACGATTTGCTAGACGCTCCAATCTGTTCAAACATTTGCGCTCA
GTTCATGATGATCGCCGACGCTTTGCATGTCGCTCATGTCCTTACAAATT
TAAACGCCAGGATCATTTGCTCAAGCACATGAGGTCGGTTCACGATAGAA
TGAGAAACTTTGTCTGTGACATATGTGGCTTTGGTTTTGCCGAAAAGTTT
AATCGCGACAAGCATCGACGGTCCATTCACATGACCAAACGAGCCTTCCA
GTGCCCGTGCGGCGCATATTTCCAGGACAGGGAGAAGATGCTCAAGTGTC
TGAGATGCAGGCAGCCTCCAAACACCGACCCCGCAACAGCAGATTGCGTG
AATGGTGTGGGAGCTGCCACCTTGTGA
back to top

Coding sequence (CDS) from alignment at tig00004382_pilon:609085..610761-

>Gchil3172.t1 ID=Gchil3172.t1|Name=Gchil3172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1677bp|location=Sequence derived from alignment at tig00004382_pilon:609085..610761- (Gracilaria chilensis NLEC103_M9 male)
ATGAGCACCACTTTCGCCTCCTCTTCGTCTCCGCACCCTGCAAACATGCT
TTCGCTCCCGTTAGCTTCTCCACCCGATCCGCTCGCCGCCTACGACCCCC
TCACGCTTTTGGACGACTCCTTCCAGCCCTATGCATCACGTCAAGTCAAC
CCCGCCCTGCCGCGACTATCACCGCCTCATCTTAGCGTTCCTTCATACTC
ACAGTCACTCCCCTCCAACAACCCCGTCCCAACCAGGAATCCTCGCCCTC
CTCTTCCGTCCCCGCCCACCGCCGCCAATGGCCCCTCCGTCCTTTCGCCG
CGTGCGTATGGCCTTTCTCCCCGACTGCCGTCTGCGCTGCCGCCCTCCGC
CTCGCCGCGCGTCGTTGAGCCCGTCACCCCTGACCGTCAGCCCCTGCCGT
TTTCCGCCGATGACGCCGCTGTGCTTTGCGAACGCGTCCCCATCGGCACC
GTCGACGAGCGTGCCGCTGCTTTCATCTTTGACAGCGTTCCGCGCCGTCC
CCTGTCTTGTCCCTCGTCAACCGTCCCTACCGCCGATGCCTCCACTCAAC
AGGAAAAGTTTAGTGCCATGTCGCTACAACTTCCGATCGACCCCTCCCTC
ACGGCGCCCCCGCCTCAGGTGCATTCTCTGTCCATGCCCTCGCACCAGCT
TACCACGTCGTCCTCCCTCGTGATGGACACCTCTTCAGCCACTGCCGCTG
CTTCTGCCGCCGCTGTGACGGCATCGAACTCCGCCCAGAATGCGCTTTCC
CCGTTCGGTCTTTCCACTCGTCAGAGCACCGCCGCTGCAATAGCTGCAGC
TGTCGATAACCCAGCATTTCATCCGTGGAACAAGGATAATGACCAAGTAC
AAAACATACCGTCGTCCATTCCCAAAACCGAGCCCACATCCAATTCGGCT
TTTGCAGCCACCACCACCGCTGCTGCCGTGGCTGCGGCTCAAGCGGCATC
ATCTTTGTGCGCTGCTACTCATCGTCCTGCACCTGCATCAGCTGTGATGT
CTTCCATGTCGCTGCCGGATCCTTCTTTGTTTCCGTCGCCAGCTGTGGCG
CAATCGTTGTGCACGTTCACACAGCTTCCTGATTTTCTACAAGCGCCACC
TACCACCAGCTCTATTAGTGATCAGTCTATGCAGATTACGCGTCCGCGAG
CGGAACCGACCAGCAATCGGCACGTTAGCGACGAGTCGTCCTTGAGAAAG
CCCGTTTGCATCCCAAAGCGCCCCATGTTACACCCGCTGGGTGTCTCTAC
AACTATCGTCGCCGCGGACACCACATCCGACCGATTACGTTGTCAAATGT
GTGGACAACGATTTGCTAGACGCTCCAATCTGTTCAAACATTTGCGCTCA
GTTCATGATGATCGCCGACGCTTTGCATGTCGCTCATGTCCTTACAAATT
TAAACGCCAGGATCATTTGCTCAAGCACATGAGGTCGGTTCACGATAGAA
TGAGAAACTTTGTCTGTGACATATGTGGCTTTGGTTTTGCCGAAAAGTTT
AATCGCGACAAGCATCGACGGTCCATTCACATGACCAAACGAGCCTTCCA
GTGCCCGTGCGGCGCATATTTCCAGGACAGGGAGAAGATGCTCAAGTGTC
TGAGATGCAGGCAGCCTCCAAACACCGACCCCGCAACAGCAGATTGCGTG
AATGGTGTGGGAGCTGCCACCTTGTGA
back to top