Gchil3182.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3182.t1
Unique NameGchil3182.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:693668..694899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3182Gchil3182Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 693668..694899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3182.t1Gchil3182.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 693668..694899 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3182.t1.start1Gchil3182.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 693668..693670 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3182.t1.CDS1Gchil3182.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 693668..694329 +
Gchil3182.t1.CDS2Gchil3182.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 694389..694639 +
Gchil3182.t1.CDS3Gchil3182.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 694700..694899 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3182.t1.exon1Gchil3182.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 693668..694329 +
Gchil3182.t1.exon2Gchil3182.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 694389..694639 +
Gchil3182.t1.exon3Gchil3182.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 694700..694899 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3182.t1.intron1Gchil3182.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 694330..694388 +
Gchil3182.t1.intron2Gchil3182.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 694640..694699 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3182.t1.stop1Gchil3182.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 694897..694899 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3182.t1 ID=Gchil3182.t1|Name=Gchil3182.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=371bp
MCSTPSHKDGPLPEPIRVRSVPPYGRPTAEEYAYMFNNYAGGVNPLGYKG
HEFAPDGSYGYRYREPPRRPAKPARRPTTSLPPQPRPSTFDVGFDDEAVL
SMPIPEEMRNELQRSFHHPQDLDDSCCPLITSSSGAITLPWACVTQSTVL
NRYLFVTWRCILLALSVTSLVISFVYGITTASMIVASAFTVTVMKEIAIS
FALISYYMKRCPMWKESDVLWIVGAMFQIATHVTLASPIVLFNNYLLGTS
RSEAVTELIRSPTAYFLGVQFFVVLLDIFFTPLPPGLYSILVGSLVIGFS
GVASVIDTSAAGFFVALGILAASSFGLGLLVHIAIAAVYFYFHASRVTRM
LNSSRVKEATDETFSDLGYS*
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spliced messenger RNA

>Gchil3182.t1 ID=Gchil3182.t1|Name=Gchil3182.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00004382_pilon:693668..694899+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCTCCACCCCAAGCCATAAAGATGGTCCGCTGCCGGAGCCTATTCG
TGTTCGTTCAGTCCCTCCATACGGCAGGCCCACAGCTGAAGAGTATGCAT
ACATGTTTAACAACTACGCCGGGGGCGTCAACCCACTCGGTTACAAGGGT
CACGAATTCGCTCCAGACGGCTCGTACGGCTACCGATACCGCGAACCTCC
GAGGCGCCCAGCGAAGCCCGCGCGCAGGCCCACCACAAGTTTACCGCCAC
AGCCGAGGCCGTCCACCTTTGATGTAGGCTTTGATGACGAGGCTGTTTTG
AGCATGCCTATTCCTGAGGAAATGCGCAATGAACTCCAACGCTCATTCCA
CCACCCTCAAGATCTCGATGATAGCTGCTGTCCGCTTATCACTAGCTCCT
CCGGAGCCATTACTTTGCCATGGGCCTGTGTGACGCAGAGCACTGTTTTG
AACCGATACCTGTTTGTAACCTGGCGATGTATCCTTTTAGCCTTGTCTGT
GACGTCGCTTGTTATTTCTTTTGTCTACGGGATAACAACAGCGTCTATGA
TAGTGGCTAGTGCCTTCACGGTCACTGTCATGAAAGAGATTGCAATTTCG
TTTGCTTTGATATCATACTACATGAAGAGATGCCCAATGTGGAAAGAAAG
CGATGTCTTATGGATTGTGGGAGCCATGTTTCAGATTGCAACGCATGTAA
CTCTTGCGTCACCGATCGTGTTATTCAACAATTATTTGCTTGGAACTTCT
CGTAGTGAGGCCGTTACCGAGTTGATTAGATCTCCAACCGCTTACTTTCT
TGGAGTACAGTTCTTTGTTGTTCTTTTGGATATTTTCTTTACCCCATTGC
CTCCTGGACTGTACAGCATTTTGGTTGGGTCCCTTGTAATTGGTTTCTCC
GGTGTCGCTTCAGTGATCGACACTTCGGCTGCAGGCTTTTTCGTGGCCCT
TGGCATCCTTGCTGCCAGTAGCTTTGGGCTAGGGCTTCTCGTGCATATTG
CAATTGCAGCGGTTTACTTCTATTTTCATGCGTCGCGCGTTACCCGGATG
CTGAACTCCTCGAGGGTAAAAGAAGCCACCGACGAGACATTTTCGGATCT
CGGGTATTCCTGA
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protein sequence of Gchil3182.t1

>Gchil3182.t1 ID=Gchil3182.t1|Name=Gchil3182.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=371bp
MCSTPSHKDGPLPEPIRVRSVPPYGRPTAEEYAYMFNNYAGGVNPLGYKG
HEFAPDGSYGYRYREPPRRPAKPARRPTTSLPPQPRPSTFDVGFDDEAVL
SMPIPEEMRNELQRSFHHPQDLDDSCCPLITSSSGAITLPWACVTQSTVL
NRYLFVTWRCILLALSVTSLVISFVYGITTASMIVASAFTVTVMKEIAIS
FALISYYMKRCPMWKESDVLWIVGAMFQIATHVTLASPIVLFNNYLLGTS
RSEAVTELIRSPTAYFLGVQFFVVLLDIFFTPLPPGLYSILVGSLVIGFS
GVASVIDTSAAGFFVALGILAASSFGLGLLVHIAIAAVYFYFHASRVTRM
LNSSRVKEATDETFSDLGYS*
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mRNA from alignment at tig00004382_pilon:693668..694899+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3182.t1 ID=Gchil3182.t1|Name=Gchil3182.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1232bp|location=Sequence derived from alignment at tig00004382_pilon:693668..694899+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCTCCACCCCAAGCCATAAAGATGGTCCGCTGCCGGAGCCTATTCG
TGTTCGTTCAGTCCCTCCATACGGCAGGCCCACAGCTGAAGAGTATGCAT
ACATGTTTAACAACTACGCCGGGGGCGTCAACCCACTCGGTTACAAGGGT
CACGAATTCGCTCCAGACGGCTCGTACGGCTACCGATACCGCGAACCTCC
GAGGCGCCCAGCGAAGCCCGCGCGCAGGCCCACCACAAGTTTACCGCCAC
AGCCGAGGCCGTCCACCTTTGATGTAGGCTTTGATGACGAGGCTGTTTTG
AGCATGCCTATTCCTGAGGAAATGCGCAATGAACTCCAACGCTCATTCCA
CCACCCTCAAGATCTCGATGATAGCTGCTGTCCGCTTATCACTAGCTCCT
CCGGAGCCATTACTTTGCCATGGGCCTGTGTGACGCAGAGCACTGTTTTG
AACCGATACCTGTTTGTAACCTGGCGATGTATCCTTTTAGCCTTGTCTGT
GACGTCGCTTGTTATTTCTTTTGTCTACGGGATAACAACAGCGTCTATGA
TAGTGGCTAGTGCCTTCACGGTCACTGTCATGAAAGAGATTGCAATTTCG
TTTGCTTTGATATCATACTACATGAAGAGATGCCCAATGTGGAAAGAAAG
CGATGTCTTATGGTATGTTTTTCTCGCGTACGTGCCTTCTCCCTGCTCAT
TGTTACTGACCACATTCGTAGGATTGTGGGAGCCATGTTTCAGATTGCAA
CGCATGTAACTCTTGCGTCACCGATCGTGTTATTCAACAATTATTTGCTT
GGAACTTCTCGTAGTGAGGCCGTTACCGAGTTGATTAGATCTCCAACCGC
TTACTTTCTTGGAGTACAGTTCTTTGTTGTTCTTTTGGATATTTTCTTTA
CCCCATTGCCTCCTGGACTGTACAGCATTTTGGTTGGGTCCCTTGTAATT
GGTTTCTCCGGTGTCGCTTCAGGTAAGTTTTTCTCTCTCAAATATGTTCG
ACGGAAAGGTAAGTTTCTGACCATATTTTCAGTGATCGACACTTCGGCTG
CAGGCTTTTTCGTGGCCCTTGGCATCCTTGCTGCCAGTAGCTTTGGGCTA
GGGCTTCTCGTGCATATTGCAATTGCAGCGGTTTACTTCTATTTTCATGC
GTCGCGCGTTACCCGGATGCTGAACTCCTCGAGGGTAAAAGAAGCCACCG
ACGAGACATTTTCGGATCTCGGGTATTCCTGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:693668..694899+

>Gchil3182.t1 ID=Gchil3182.t1|Name=Gchil3182.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00004382_pilon:693668..694899+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGCTCCACCCCAAGCCATAAAGATGGTCCGCTGCCGGAGCCTATTCG
TGTTCGTTCAGTCCCTCCATACGGCAGGCCCACAGCTGAAGAGTATGCAT
ACATGTTTAACAACTACGCCGGGGGCGTCAACCCACTCGGTTACAAGGGT
CACGAATTCGCTCCAGACGGCTCGTACGGCTACCGATACCGCGAACCTCC
GAGGCGCCCAGCGAAGCCCGCGCGCAGGCCCACCACAAGTTTACCGCCAC
AGCCGAGGCCGTCCACCTTTGATGTAGGCTTTGATGACGAGGCTGTTTTG
AGCATGCCTATTCCTGAGGAAATGCGCAATGAACTCCAACGCTCATTCCA
CCACCCTCAAGATCTCGATGATAGCTGCTGTCCGCTTATCACTAGCTCCT
CCGGAGCCATTACTTTGCCATGGGCCTGTGTGACGCAGAGCACTGTTTTG
AACCGATACCTGTTTGTAACCTGGCGATGTATCCTTTTAGCCTTGTCTGT
GACGTCGCTTGTTATTTCTTTTGTCTACGGGATAACAACAGCGTCTATGA
TAGTGGCTAGTGCCTTCACGGTCACTGTCATGAAAGAGATTGCAATTTCG
TTTGCTTTGATATCATACTACATGAAGAGATGCCCAATGTGGAAAGAAAG
CGATGTCTTATGGATTGTGGGAGCCATGTTTCAGATTGCAACGCATGTAA
CTCTTGCGTCACCGATCGTGTTATTCAACAATTATTTGCTTGGAACTTCT
CGTAGTGAGGCCGTTACCGAGTTGATTAGATCTCCAACCGCTTACTTTCT
TGGAGTACAGTTCTTTGTTGTTCTTTTGGATATTTTCTTTACCCCATTGC
CTCCTGGACTGTACAGCATTTTGGTTGGGTCCCTTGTAATTGGTTTCTCC
GGTGTCGCTTCAGTGATCGACACTTCGGCTGCAGGCTTTTTCGTGGCCCT
TGGCATCCTTGCTGCCAGTAGCTTTGGGCTAGGGCTTCTCGTGCATATTG
CAATTGCAGCGGTTTACTTCTATTTTCATGCGTCGCGCGTTACCCGGATG
CTGAACTCCTCGAGGGTAAAAGAAGCCACCGACGAGACATTTTCGGATCT
CGGGTATTCCTGA
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