Gchil3229.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3229.t1
Unique NameGchil3229.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length830
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1177145..1179634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707377.1
PFAMsChorein_N,VPS13,VPS13_C,Vps62
Max annot lvl2759|Eukaryota
KEGG koko:K19526
Evalue1.38e-25
EggNOG OGsCOG5043@1|root,KOG1809@2759|Eukaryota
Descriptionregulation of parkin-mediated stimulation of mitophagy in response to mitochondrial depolarization
COG categoryU
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3229Gchil3229Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1177145..1179634 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3229.t1.start1Gchil3229.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1177145..1177147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3229.t1.CDS1Gchil3229.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1177145..1179634 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3229.t1.exon1Gchil3229.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1177145..1179634 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3229.t1.stop1Gchil3229.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1179632..1179634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3229.t1Gchil3229.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1177145..1179634 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3229.t1 ID=Gchil3229.t1|Name=Gchil3229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=830bp
MLQNTLSALLQSVASRYAELSPSDVGIGLRGGRLVVDDVQLRADTFNGPH
IPFHVLEGRAGRLRVNVPWSALTDAPVQLYLENVHLIAGPKHSYPDPAAH
PSKRSSKRSSASAPHWHQTNVGRLLFNVSVEMYGIKVEYRDPHCVGIISV
ASLHAYSAGPEWQRRFASLTSALDPNSPHATAVTMRKLVRLGGVHWVMIP
RTNNAAEQPSTDPPQAPPASPRYEHRRMDLQSYESRAPILDGIPISVKVL
LHSGTAQIDDQFIPGLHAEIHVDIEDPSVNLTARQIKWIDNIVKAGFGLG
AVSNHPPSKSHPARSAVPTPKRRRPQPPSDTKQSSAPTSEGINEDDTDRS
EAEGSVGANEELLISSQLEKELAHQLRKSRSNFSENSSRKHEAQYAEQPL
QEHDEDSHEEYEEDDLIIVQDPNSSEEHDAPPQRGGLRSFWQAIVSENAD
DTVDDAAIVLGLANGHAPDEEDTDTTPEAEDGVEAEHQFAREAVNAAAEA
GGLTLQLVLRTPDHQAWQKVKKLEEELEEEKKLRTSLEDAERILRESEQR
VQDSETLAQKLRDRNEALVKELQDLEQMTSQAGKNKDAMIRQMEAALVKA
EKNLQAMLQAKFKKDANSAITKSIQVNTYQEEVDVKPVFKKQSSTLQEGD
AEKQVPKNPEKASGTQKVPSLGSGGSGDDGDPMQKEHVPKILENGEQESK
DSLDRRATDVVNEPTERNTKIPPSVSGYKEKDRIADIASHANTATKGKQS
DGTNGTILNTSASAPVGGQEQSLTEVQLHNDRYSQLSLDAPSVSITKLIA
DMSTKVDVVESSHSKHLEATMSSEGLTLI*
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spliced messenger RNA

>Gchil3229.t1 ID=Gchil3229.t1|Name=Gchil3229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00004382_pilon:1177145..1179634+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCAGAATACCCTCTCCGCGCTGCTGCAGTCCGTCGCCAGTCGTTA
CGCAGAGCTCTCTCCGTCTGACGTCGGCATCGGGCTGCGCGGCGGCCGCC
TCGTCGTCGACGACGTCCAGCTCCGCGCAGATACCTTCAATGGCCCCCAC
ATCCCCTTCCACGTCCTCGAGGGCCGCGCCGGTCGCCTGCGCGTCAACGT
CCCGTGGTCCGCCCTCACCGACGCCCCTGTCCAGCTCTACCTCGAGAACG
TCCATCTCATCGCCGGTCCCAAGCACAGCTATCCAGACCCCGCCGCCCAC
CCCTCCAAGCGCTCTTCTAAACGCTCCTCTGCCTCCGCCCCGCACTGGCA
CCAGACAAATGTCGGCCGCCTGCTCTTCAACGTTTCTGTCGAGATGTACG
GCATCAAGGTCGAGTACCGCGACCCCCACTGCGTCGGTATCATCTCCGTT
GCTTCGCTGCATGCCTACAGCGCCGGTCCCGAATGGCAGCGCCGCTTCGC
GTCGCTCACCTCCGCCCTCGATCCGAACAGCCCCCACGCCACTGCAGTCA
CCATGCGCAAACTCGTGCGTCTCGGTGGCGTCCACTGGGTCATGATCCCT
CGCACCAACAACGCTGCGGAGCAACCCAGCACCGATCCGCCACAAGCACC
GCCCGCCTCTCCCAGGTACGAGCACAGGCGCATGGATCTGCAATCCTACG
AAAGTCGCGCCCCGATTCTGGATGGCATACCCATCTCGGTCAAAGTGCTA
CTGCACAGTGGCACCGCCCAGATTGACGACCAGTTTATCCCGGGATTGCA
TGCTGAAATTCATGTAGATATCGAAGACCCCAGCGTTAACCTCACTGCTC
GTCAAATCAAATGGATTGACAACATTGTCAAGGCCGGTTTTGGCTTGGGT
GCCGTCAGCAACCACCCGCCTTCGAAGTCCCACCCTGCGCGTTCCGCAGT
GCCCACTCCCAAACGGCGAAGGCCCCAGCCACCTAGTGATACCAAGCAAT
CTTCTGCGCCGACGAGCGAAGGTATTAATGAGGATGACACTGATCGTTCT
GAAGCGGAAGGTTCCGTAGGTGCCAATGAAGAGCTCTTAATCAGCTCACA
ACTGGAAAAAGAACTTGCGCATCAACTACGAAAATCACGCTCCAACTTTT
CGGAAAACTCCTCGAGAAAACATGAAGCTCAGTACGCAGAACAACCCCTG
CAGGAACATGATGAGGACAGCCACGAAGAATACGAAGAAGATGATTTAAT
TATTGTACAGGACCCCAACTCTTCAGAAGAGCATGATGCACCTCCGCAAA
GAGGAGGACTGCGATCATTTTGGCAAGCGATTGTGAGTGAAAATGCTGAT
GATACCGTCGACGACGCGGCGATTGTTTTGGGCCTCGCCAATGGACACGC
ACCAGACGAAGAAGACACTGACACGACTCCAGAAGCAGAAGACGGTGTTG
AGGCTGAACATCAGTTTGCTCGGGAAGCAGTCAACGCGGCCGCAGAAGCT
GGCGGTCTGACACTTCAACTCGTCTTGCGCACACCTGACCACCAAGCTTG
GCAAAAGGTCAAGAAATTAGAAGAGGAACTTGAAGAAGAGAAAAAACTAA
GAACCAGCTTGGAAGACGCAGAAAGGATTTTGCGAGAATCCGAACAGCGT
GTGCAGGACTCGGAAACTCTGGCGCAAAAATTGCGAGACAGAAATGAAGC
GCTTGTCAAAGAACTTCAAGACCTTGAGCAGATGACTTCTCAAGCTGGGA
AGAACAAGGATGCTATGATCCGCCAAATGGAGGCTGCCCTGGTCAAAGCA
GAGAAAAATCTTCAGGCCATGTTGCAAGCCAAGTTCAAAAAGGATGCGAA
CAGTGCAATCACAAAGTCTATTCAAGTTAACACATATCAGGAAGAGGTAG
ATGTGAAACCAGTATTCAAAAAACAATCTAGTACACTTCAGGAAGGGGAT
GCCGAAAAACAAGTGCCTAAGAACCCGGAGAAAGCATCTGGTACTCAAAA
AGTACCATCCTTGGGTTCTGGGGGGTCCGGCGATGATGGCGACCCAATGC
AAAAGGAACATGTTCCGAAAATATTAGAGAACGGTGAACAAGAAAGCAAA
GATTCTTTGGATCGGAGAGCGACCGATGTCGTTAACGAGCCTACTGAAAG
GAACACCAAGATTCCACCATCGGTATCAGGATACAAAGAAAAAGACCGAA
TAGCAGACATTGCGTCGCACGCGAACACAGCGACAAAGGGAAAGCAATCA
GACGGTACCAACGGTACTATTCTTAACACGAGCGCTTCCGCTCCAGTCGG
TGGTCAAGAGCAAAGTCTCACAGAGGTTCAGTTGCACAATGATAGATATA
GTCAACTTTCTCTGGATGCACCATCTGTGTCAATTACAAAACTAATCGCA
GACATGAGCACCAAGGTCGATGTTGTTGAATCTTCGCACAGCAAACACCT
TGAAGCAACCATGTCTTCAGAAGGTCTAACTCTCATTTAG
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protein sequence of Gchil3229.t1

>Gchil3229.t1 ID=Gchil3229.t1|Name=Gchil3229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=830bp
MLQNTLSALLQSVASRYAELSPSDVGIGLRGGRLVVDDVQLRADTFNGPH
IPFHVLEGRAGRLRVNVPWSALTDAPVQLYLENVHLIAGPKHSYPDPAAH
PSKRSSKRSSASAPHWHQTNVGRLLFNVSVEMYGIKVEYRDPHCVGIISV
ASLHAYSAGPEWQRRFASLTSALDPNSPHATAVTMRKLVRLGGVHWVMIP
RTNNAAEQPSTDPPQAPPASPRYEHRRMDLQSYESRAPILDGIPISVKVL
LHSGTAQIDDQFIPGLHAEIHVDIEDPSVNLTARQIKWIDNIVKAGFGLG
AVSNHPPSKSHPARSAVPTPKRRRPQPPSDTKQSSAPTSEGINEDDTDRS
EAEGSVGANEELLISSQLEKELAHQLRKSRSNFSENSSRKHEAQYAEQPL
QEHDEDSHEEYEEDDLIIVQDPNSSEEHDAPPQRGGLRSFWQAIVSENAD
DTVDDAAIVLGLANGHAPDEEDTDTTPEAEDGVEAEHQFAREAVNAAAEA
GGLTLQLVLRTPDHQAWQKVKKLEEELEEEKKLRTSLEDAERILRESEQR
VQDSETLAQKLRDRNEALVKELQDLEQMTSQAGKNKDAMIRQMEAALVKA
EKNLQAMLQAKFKKDANSAITKSIQVNTYQEEVDVKPVFKKQSSTLQEGD
AEKQVPKNPEKASGTQKVPSLGSGGSGDDGDPMQKEHVPKILENGEQESK
DSLDRRATDVVNEPTERNTKIPPSVSGYKEKDRIADIASHANTATKGKQS
DGTNGTILNTSASAPVGGQEQSLTEVQLHNDRYSQLSLDAPSVSITKLIA
DMSTKVDVVESSHSKHLEATMSSEGLTLI*
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mRNA from alignment at tig00004382_pilon:1177145..1179634+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3229.t1 ID=Gchil3229.t1|Name=Gchil3229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2490bp|location=Sequence derived from alignment at tig00004382_pilon:1177145..1179634+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCAGAATACCCTCTCCGCGCTGCTGCAGTCCGTCGCCAGTCGTTA CGCAGAGCTCTCTCCGTCTGACGTCGGCATCGGGCTGCGCGGCGGCCGCC TCGTCGTCGACGACGTCCAGCTCCGCGCAGATACCTTCAATGGCCCCCAC ATCCCCTTCCACGTCCTCGAGGGCCGCGCCGGTCGCCTGCGCGTCAACGT CCCGTGGTCCGCCCTCACCGACGCCCCTGTCCAGCTCTACCTCGAGAACG TCCATCTCATCGCCGGTCCCAAGCACAGCTATCCAGACCCCGCCGCCCAC CCCTCCAAGCGCTCTTCTAAACGCTCCTCTGCCTCCGCCCCGCACTGGCA CCAGACAAATGTCGGCCGCCTGCTCTTCAACGTTTCTGTCGAGATGTACG GCATCAAGGTCGAGTACCGCGACCCCCACTGCGTCGGTATCATCTCCGTT GCTTCGCTGCATGCCTACAGCGCCGGTCCCGAATGGCAGCGCCGCTTCGC GTCGCTCACCTCCGCCCTCGATCCGAACAGCCCCCACGCCACTGCAGTCA CCATGCGCAAACTCGTGCGTCTCGGTGGCGTCCACTGGGTCATGATCCCT CGCACCAACAACGCTGCGGAGCAACCCAGCACCGATCCGCCACAAGCACC GCCCGCCTCTCCCAGGTACGAGCACAGGCGCATGGATCTGCAATCCTACG AAAGTCGCGCCCCGATTCTGGATGGCATACCCATCTCGGTCAAAGTGCTA CTGCACAGTGGCACCGCCCAGATTGACGACCAGTTTATCCCGGGATTGCA TGCTGAAATTCATGTAGATATCGAAGACCCCAGCGTTAACCTCACTGCTC GTCAAATCAAATGGATTGACAACATTGTCAAGGCCGGTTTTGGCTTGGGT GCCGTCAGCAACCACCCGCCTTCGAAGTCCCACCCTGCGCGTTCCGCAGT GCCCACTCCCAAACGGCGAAGGCCCCAGCCACCTAGTGATACCAAGCAAT CTTCTGCGCCGACGAGCGAAGGTATTAATGAGGATGACACTGATCGTTCT GAAGCGGAAGGTTCCGTAGGTGCCAATGAAGAGCTCTTAATCAGCTCACA ACTGGAAAAAGAACTTGCGCATCAACTACGAAAATCACGCTCCAACTTTT CGGAAAACTCCTCGAGAAAACATGAAGCTCAGTACGCAGAACAACCCCTG CAGGAACATGATGAGGACAGCCACGAAGAATACGAAGAAGATGATTTAAT TATTGTACAGGACCCCAACTCTTCAGAAGAGCATGATGCACCTCCGCAAA GAGGAGGACTGCGATCATTTTGGCAAGCGATTGTGAGTGAAAATGCTGAT GATACCGTCGACGACGCGGCGATTGTTTTGGGCCTCGCCAATGGACACGC ACCAGACGAAGAAGACACTGACACGACTCCAGAAGCAGAAGACGGTGTTG AGGCTGAACATCAGTTTGCTCGGGAAGCAGTCAACGCGGCCGCAGAAGCT GGCGGTCTGACACTTCAACTCGTCTTGCGCACACCTGACCACCAAGCTTG GCAAAAGGTCAAGAAATTAGAAGAGGAACTTGAAGAAGAGAAAAAACTAA GAACCAGCTTGGAAGACGCAGAAAGGATTTTGCGAGAATCCGAACAGCGT GTGCAGGACTCGGAAACTCTGGCGCAAAAATTGCGAGACAGAAATGAAGC GCTTGTCAAAGAACTTCAAGACCTTGAGCAGATGACTTCTCAAGCTGGGA AGAACAAGGATGCTATGATCCGCCAAATGGAGGCTGCCCTGGTCAAAGCA GAGAAAAATCTTCAGGCCATGTTGCAAGCCAAGTTCAAAAAGGATGCGAA CAGTGCAATCACAAAGTCTATTCAAGTTAACACATATCAGGAAGAGGTAG ATGTGAAACCAGTATTCAAAAAACAATCTAGTACACTTCAGGAAGGGGAT GCCGAAAAACAAGTGCCTAAGAACCCGGAGAAAGCATCTGGTACTCAAAA AGTACCATCCTTGGGTTCTGGGGGGTCCGGCGATGATGGCGACCCAATGC AAAAGGAACATGTTCCGAAAATATTAGAGAACGGTGAACAAGAAAGCAAA GATTCTTTGGATCGGAGAGCGACCGATGTCGTTAACGAGCCTACTGAAAG GAACACCAAGATTCCACCATCGGTATCAGGATACAAAGAAAAAGACCGAA TAGCAGACATTGCGTCGCACGCGAACACAGCGACAAAGGGAAAGCAATCA GACGGTACCAACGGTACTATTCTTAACACGAGCGCTTCCGCTCCAGTCGG TGGTCAAGAGCAAAGTCTCACAGAGGTTCAGTTGCACAATGATAGATATA GTCAACTTTCTCTGGATGCACCATCTGTGTCAATTACAAAACTAATCGCA GACATGAGCACCAAGGTCGATGTTGTTGAATCTTCGCACAGCAAACACCT TGAAGCAACCATGTCTTCAGAAGGTCTAACTCTCATTTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:1177145..1179634+

>Gchil3229.t1 ID=Gchil3229.t1|Name=Gchil3229.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2490bp|location=Sequence derived from alignment at tig00004382_pilon:1177145..1179634+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTGCAGAATACCCTCTCCGCGCTGCTGCAGTCCGTCGCCAGTCGTTA
CGCAGAGCTCTCTCCGTCTGACGTCGGCATCGGGCTGCGCGGCGGCCGCC
TCGTCGTCGACGACGTCCAGCTCCGCGCAGATACCTTCAATGGCCCCCAC
ATCCCCTTCCACGTCCTCGAGGGCCGCGCCGGTCGCCTGCGCGTCAACGT
CCCGTGGTCCGCCCTCACCGACGCCCCTGTCCAGCTCTACCTCGAGAACG
TCCATCTCATCGCCGGTCCCAAGCACAGCTATCCAGACCCCGCCGCCCAC
CCCTCCAAGCGCTCTTCTAAACGCTCCTCTGCCTCCGCCCCGCACTGGCA
CCAGACAAATGTCGGCCGCCTGCTCTTCAACGTTTCTGTCGAGATGTACG
GCATCAAGGTCGAGTACCGCGACCCCCACTGCGTCGGTATCATCTCCGTT
GCTTCGCTGCATGCCTACAGCGCCGGTCCCGAATGGCAGCGCCGCTTCGC
GTCGCTCACCTCCGCCCTCGATCCGAACAGCCCCCACGCCACTGCAGTCA
CCATGCGCAAACTCGTGCGTCTCGGTGGCGTCCACTGGGTCATGATCCCT
CGCACCAACAACGCTGCGGAGCAACCCAGCACCGATCCGCCACAAGCACC
GCCCGCCTCTCCCAGGTACGAGCACAGGCGCATGGATCTGCAATCCTACG
AAAGTCGCGCCCCGATTCTGGATGGCATACCCATCTCGGTCAAAGTGCTA
CTGCACAGTGGCACCGCCCAGATTGACGACCAGTTTATCCCGGGATTGCA
TGCTGAAATTCATGTAGATATCGAAGACCCCAGCGTTAACCTCACTGCTC
GTCAAATCAAATGGATTGACAACATTGTCAAGGCCGGTTTTGGCTTGGGT
GCCGTCAGCAACCACCCGCCTTCGAAGTCCCACCCTGCGCGTTCCGCAGT
GCCCACTCCCAAACGGCGAAGGCCCCAGCCACCTAGTGATACCAAGCAAT
CTTCTGCGCCGACGAGCGAAGGTATTAATGAGGATGACACTGATCGTTCT
GAAGCGGAAGGTTCCGTAGGTGCCAATGAAGAGCTCTTAATCAGCTCACA
ACTGGAAAAAGAACTTGCGCATCAACTACGAAAATCACGCTCCAACTTTT
CGGAAAACTCCTCGAGAAAACATGAAGCTCAGTACGCAGAACAACCCCTG
CAGGAACATGATGAGGACAGCCACGAAGAATACGAAGAAGATGATTTAAT
TATTGTACAGGACCCCAACTCTTCAGAAGAGCATGATGCACCTCCGCAAA
GAGGAGGACTGCGATCATTTTGGCAAGCGATTGTGAGTGAAAATGCTGAT
GATACCGTCGACGACGCGGCGATTGTTTTGGGCCTCGCCAATGGACACGC
ACCAGACGAAGAAGACACTGACACGACTCCAGAAGCAGAAGACGGTGTTG
AGGCTGAACATCAGTTTGCTCGGGAAGCAGTCAACGCGGCCGCAGAAGCT
GGCGGTCTGACACTTCAACTCGTCTTGCGCACACCTGACCACCAAGCTTG
GCAAAAGGTCAAGAAATTAGAAGAGGAACTTGAAGAAGAGAAAAAACTAA
GAACCAGCTTGGAAGACGCAGAAAGGATTTTGCGAGAATCCGAACAGCGT
GTGCAGGACTCGGAAACTCTGGCGCAAAAATTGCGAGACAGAAATGAAGC
GCTTGTCAAAGAACTTCAAGACCTTGAGCAGATGACTTCTCAAGCTGGGA
AGAACAAGGATGCTATGATCCGCCAAATGGAGGCTGCCCTGGTCAAAGCA
GAGAAAAATCTTCAGGCCATGTTGCAAGCCAAGTTCAAAAAGGATGCGAA
CAGTGCAATCACAAAGTCTATTCAAGTTAACACATATCAGGAAGAGGTAG
ATGTGAAACCAGTATTCAAAAAACAATCTAGTACACTTCAGGAAGGGGAT
GCCGAAAAACAAGTGCCTAAGAACCCGGAGAAAGCATCTGGTACTCAAAA
AGTACCATCCTTGGGTTCTGGGGGGTCCGGCGATGATGGCGACCCAATGC
AAAAGGAACATGTTCCGAAAATATTAGAGAACGGTGAACAAGAAAGCAAA
GATTCTTTGGATCGGAGAGCGACCGATGTCGTTAACGAGCCTACTGAAAG
GAACACCAAGATTCCACCATCGGTATCAGGATACAAAGAAAAAGACCGAA
TAGCAGACATTGCGTCGCACGCGAACACAGCGACAAAGGGAAAGCAATCA
GACGGTACCAACGGTACTATTCTTAACACGAGCGCTTCCGCTCCAGTCGG
TGGTCAAGAGCAAAGTCTCACAGAGGTTCAGTTGCACAATGATAGATATA
GTCAACTTTCTCTGGATGCACCATCTGTGTCAATTACAAAACTAATCGCA
GACATGAGCACCAAGGTCGATGTTGTTGAATCTTCGCACAGCAAACACCT
TGAAGCAACCATGTCTTCAGAAGGTCTAACTCTCATTTAG
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