Gchil3103.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3103.t1
Unique Name	Gchil3103.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	327

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:91020..92000 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	2880.D7G4N1
PFAMs	GTP-bdg_M,GTP-bdg_N,MMR_HSR1,TMEM141
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K03665
GOs	GO:0000226,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0034622,GO:0035082,GO:0036158,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Evalue	8.49e-86
EggNOG OGs	COG2262@1\|root,KOG0410@2759\|Eukaryota
Description	ribosome binding
COG category	O
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3103	Gchil3103	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 91020..92000 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3103.t1.stop1	Gchil3103.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 91020..91022 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3103.t1.CDS1	Gchil3103.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 91020..92000 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3103.t1.exon1	Gchil3103.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 91020..92000 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3103.t1.start1	Gchil3103.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 91998..92000 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3103.t1	Gchil3103.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 91020..92000 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:91020..92000-
coding sequence from alignment at tig00004382_pilon:91020..92000-

mRNA sequence

>Gchil3103.t1 ID=Gchil3103.t1|Name=Gchil3103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=327bp
MWTHLERQSGAGGVGLRGPGETQLEVDRRMINSKVSRLKKELELVRAHRT
RMRQARKRNIGLPVVALIGYTNGGKSSLLNALSGADALAANALFATLDPT
TRRASLDGLKLSPEILVTDTVGFVQNLPTQLVAAFRATLEEVVDADMLLH
VVDGSDEADVMQRKIEAVERVVEEIGAGGKPTVVVLNKTDLVAEPEMERL
KGTIEMEGEFECVTVSAKTGEGMDEMGMVIDEVLRDTMRSVEVVIPYSRG
DLTTAIYVQGSVEAEEFVKDGTLMQARVPVALWNRLGEFIVGGPAKDKAV
DEQTKWVDLAKKRHSTRMASAHETAA*

spliced messenger RNA

>Gchil3103.t1 ID=Gchil3103.t1|Name=Gchil3103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00004382_pilon:91020..92000- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGACACATCTGGAACGCCAGTCTGGCGCCGGCGGCGTGGGGCTGCG
CGGTCCGGGAGAGACACAGCTCGAGGTGGATAGACGAATGATCAACTCAA
AAGTGAGCAGACTCAAGAAAGAGTTGGAGCTAGTACGCGCGCACAGAACA
CGTATGAGACAGGCTCGCAAACGAAACATAGGCTTGCCTGTAGTGGCCCT
AATCGGGTACACAAATGGAGGGAAAAGCTCGTTGCTCAACGCACTCAGCG
GGGCGGATGCGCTTGCGGCCAACGCACTGTTTGCAACTTTGGACCCAACA
ACGCGGCGCGCAAGCTTGGACGGACTCAAGCTAAGCCCTGAGATCTTGGT
GACTGACACGGTAGGGTTTGTGCAGAACTTACCCACACAGCTGGTAGCGG
CGTTTCGAGCTACTTTAGAGGAGGTGGTAGACGCGGACATGCTGTTGCAC
GTGGTGGACGGATCGGACGAGGCAGATGTGATGCAGCGAAAGATTGAGGC
AGTTGAAAGAGTGGTGGAGGAGATTGGAGCTGGTGGAAAGCCGACGGTGG
TGGTGCTAAACAAGACGGATTTGGTGGCGGAGCCCGAGATGGAGCGCTTG
AAGGGGACGATCGAGATGGAGGGCGAATTCGAGTGTGTGACGGTAAGTGC
GAAGACGGGCGAGGGCATGGACGAGATGGGAATGGTGATCGACGAGGTTC
TACGCGACACGATGCGCAGCGTAGAAGTGGTGATTCCTTACAGCCGTGGA
GACCTGACCACTGCCATCTATGTGCAAGGCAGTGTGGAGGCTGAGGAATT
CGTCAAGGACGGCACGCTGATGCAGGCGCGCGTGCCGGTGGCGCTGTGGA
ATCGGCTTGGAGAGTTCATAGTGGGGGGACCCGCGAAAGACAAGGCCGTG
GACGAGCAAACGAAGTGGGTAGACCTAGCGAAGAAGCGTCACTCGACGCG
GATGGCGAGCGCACACGAAACAGCGGCGTGA

protein sequence of Gchil3103.t1

>Gchil3103.t1 ID=Gchil3103.t1|Name=Gchil3103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=327bp
MWTHLERQSGAGGVGLRGPGETQLEVDRRMINSKVSRLKKELELVRAHRT
RMRQARKRNIGLPVVALIGYTNGGKSSLLNALSGADALAANALFATLDPT
TRRASLDGLKLSPEILVTDTVGFVQNLPTQLVAAFRATLEEVVDADMLLH
VVDGSDEADVMQRKIEAVERVVEEIGAGGKPTVVVLNKTDLVAEPEMERL
KGTIEMEGEFECVTVSAKTGEGMDEMGMVIDEVLRDTMRSVEVVIPYSRG
DLTTAIYVQGSVEAEEFVKDGTLMQARVPVALWNRLGEFIVGGPAKDKAV
DEQTKWVDLAKKRHSTRMASAHETAA*

mRNA from alignment at tig00004382_pilon:91020..92000-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3103.t1 ID=Gchil3103.t1|Name=Gchil3103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00004382_pilon:91020..92000- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGACACATCTGGAACGCCAGTCTGGCGCCGGCGGCGTGGGGCTGCG
CGGTCCGGGAGAGACACAGCTCGAGGTGGATAGACGAATGATCAACTCAA
AAGTGAGCAGACTCAAGAAAGAGTTGGAGCTAGTACGCGCGCACAGAACA
CGTATGAGACAGGCTCGCAAACGAAACATAGGCTTGCCTGTAGTGGCCCT
AATCGGGTACACAAATGGAGGGAAAAGCTCGTTGCTCAACGCACTCAGCG
GGGCGGATGCGCTTGCGGCCAACGCACTGTTTGCAACTTTGGACCCAACA
ACGCGGCGCGCAAGCTTGGACGGACTCAAGCTAAGCCCTGAGATCTTGGT
GACTGACACGGTAGGGTTTGTGCAGAACTTACCCACACAGCTGGTAGCGG
CGTTTCGAGCTACTTTAGAGGAGGTGGTAGACGCGGACATGCTGTTGCAC
GTGGTGGACGGATCGGACGAGGCAGATGTGATGCAGCGAAAGATTGAGGC
AGTTGAAAGAGTGGTGGAGGAGATTGGAGCTGGTGGAAAGCCGACGGTGG
TGGTGCTAAACAAGACGGATTTGGTGGCGGAGCCCGAGATGGAGCGCTTG
AAGGGGACGATCGAGATGGAGGGCGAATTCGAGTGTGTGACGGTAAGTGC
GAAGACGGGCGAGGGCATGGACGAGATGGGAATGGTGATCGACGAGGTTC
TACGCGACACGATGCGCAGCGTAGAAGTGGTGATTCCTTACAGCCGTGGA
GACCTGACCACTGCCATCTATGTGCAAGGCAGTGTGGAGGCTGAGGAATT
CGTCAAGGACGGCACGCTGATGCAGGCGCGCGTGCCGGTGGCGCTGTGGA
ATCGGCTTGGAGAGTTCATAGTGGGGGGACCCGCGAAAGACAAGGCCGTG
GACGAGCAAACGAAGTGGGTAGACCTAGCGAAGAAGCGTCACTCGACGCG
GATGGCGAGCGCACACGAAACAGCGGCGTGA

Coding sequence (CDS) from alignment at tig00004382_pilon:91020..92000-

>Gchil3103.t1 ID=Gchil3103.t1|Name=Gchil3103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00004382_pilon:91020..92000- (Gracilaria chilensis NLEC103_M9 male)
ATGTGGACACATCTGGAACGCCAGTCTGGCGCCGGCGGCGTGGGGCTGCG
CGGTCCGGGAGAGACACAGCTCGAGGTGGATAGACGAATGATCAACTCAA
AAGTGAGCAGACTCAAGAAAGAGTTGGAGCTAGTACGCGCGCACAGAACA
CGTATGAGACAGGCTCGCAAACGAAACATAGGCTTGCCTGTAGTGGCCCT
AATCGGGTACACAAATGGAGGGAAAAGCTCGTTGCTCAACGCACTCAGCG
GGGCGGATGCGCTTGCGGCCAACGCACTGTTTGCAACTTTGGACCCAACA
ACGCGGCGCGCAAGCTTGGACGGACTCAAGCTAAGCCCTGAGATCTTGGT
GACTGACACGGTAGGGTTTGTGCAGAACTTACCCACACAGCTGGTAGCGG
CGTTTCGAGCTACTTTAGAGGAGGTGGTAGACGCGGACATGCTGTTGCAC
GTGGTGGACGGATCGGACGAGGCAGATGTGATGCAGCGAAAGATTGAGGC
AGTTGAAAGAGTGGTGGAGGAGATTGGAGCTGGTGGAAAGCCGACGGTGG
TGGTGCTAAACAAGACGGATTTGGTGGCGGAGCCCGAGATGGAGCGCTTG
AAGGGGACGATCGAGATGGAGGGCGAATTCGAGTGTGTGACGGTAAGTGC
GAAGACGGGCGAGGGCATGGACGAGATGGGAATGGTGATCGACGAGGTTC
TACGCGACACGATGCGCAGCGTAGAAGTGGTGATTCCTTACAGCCGTGGA
GACCTGACCACTGCCATCTATGTGCAAGGCAGTGTGGAGGCTGAGGAATT
CGTCAAGGACGGCACGCTGATGCAGGCGCGCGTGCCGGTGGCGCTGTGGA
ATCGGCTTGGAGAGTTCATAGTGGGGGGACCCGCGAAAGACAAGGCCGTG
GACGAGCAAACGAAGTGGGTAGACCTAGCGAAGAAGCGTCACTCGACGCG
GATGGCGAGCGCACACGAAACAGCGGCGTGA