Gchil3206.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3206.t1
Unique Name	Gchil3206.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	704

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:900771..902882 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6183.Smp_195150.1
PFAMs	RVT_1,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl	33208\|Metazoa
Evalue	9.28e-44
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Description	K02A2.6-like
COG category	E

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3206	Gchil3206	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 900771..902882 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3206.t1.stop1	Gchil3206.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 900771..900773 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3206.t1.CDS1	Gchil3206.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 900771..902882 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3206.t1.exon1	Gchil3206.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 900771..902882 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3206.t1.start1	Gchil3206.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 902880..902882 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3206.t1	Gchil3206.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 900771..902882 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:900771..902882-
coding sequence from alignment at tig00004382_pilon:900771..902882-

mRNA sequence

>Gchil3206.t1 ID=Gchil3206.t1|Name=Gchil3206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=704bp
MRWRLRLSEFDFEILYKKGKLNTQADALSRLGTTAETEPYEDDDIPCFMV
SDLEGGAQPLTDDVCDDILVNESLDSPTGSFIPISSEEMIREQQLDPFCT
RIRARLNGGFQLPFEDDDQGYLIRTVGPRPRIVVPHTLQQRVLHLTHYVK
VCAHPGGRKLYLTLRRDFYWPTMAFDCYAVRRACANCAKNDVKLRKHSKK
LTLFQARAPLEFVAIDILGEFIRTPRGHRYLLVISDRFSKLTRTVPLKRI
TAATVAKAFVTHWVFVYGPPVQLLSDNGRQFASKFFQDVCRILDVRNLFV
TTYHPQGNGQVERFNRTILNALRSYVADHPKNWDLYTDAITYAYNTQVHR
VTSLSPFELVLSRTPPPVAIEAQPMLSTYPSPGLYREAWKEWLTKMVPIA
RKAMDKAQRVYKKDFDNRVRKPLPQVEPDDFVFLRKEYYNPEKERRHKLS
PIVDGPYRVVSVDPNTVVLDIANRHERISRDCITRAPNPNVEVVSSPTPS
TGDDSTEVNPSGGDSNTRPVILPHLERGLTDLPETSDTLEPGPAPSRAQS
TNSYRVTPPPEVIKHPGSPPKEGDEDLVPSQDDASASASRPNRESSSHSE
TASPTEPPREKSQPQRMGSDITADPAEHDVRKDDETPPRESRGENAAPGT
PTKPTITRRRGQDTEVSHTQTPLSRERAVSADPHGEDLDDEVDQIWLSFM
EWE*

spliced messenger RNA

>Gchil3206.t1 ID=Gchil3206.t1|Name=Gchil3206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00004382_pilon:900771..902882- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTGGCGTCTCCGACTGTCGGAATTCGACTTTGAGATCCTGTACAA
GAAAGGGAAGCTGAACACTCAGGCTGATGCACTATCCCGCTTGGGAACCA
CAGCGGAAACGGAACCCTACGAGGACGATGACATCCCATGTTTTATGGTA
TCGGACCTCGAGGGAGGAGCTCAACCGCTGACGGATGATGTTTGTGACGA
TATACTCGTCAACGAGAGTCTGGATTCGCCGACCGGCTCTTTTATACCTA
TCTCTTCAGAGGAGATGATACGCGAGCAACAGCTCGACCCATTCTGTACA
CGGATTCGGGCTCGCCTCAACGGAGGATTTCAGTTACCTTTCGAGGACGA
CGATCAGGGTTACCTAATCAGGACCGTTGGACCTCGCCCGAGGATAGTGG
TGCCGCACACACTACAACAGAGGGTATTACACCTCACTCACTATGTGAAG
GTTTGCGCCCACCCCGGGGGAAGAAAACTGTACCTCACGTTGAGAAGGGA
CTTTTACTGGCCGACAATGGCATTCGATTGTTACGCCGTCAGACGGGCCT
GCGCCAATTGCGCCAAGAATGACGTCAAACTTCGGAAGCACTCTAAGAAG
TTGACGCTGTTCCAGGCACGGGCTCCACTCGAATTCGTGGCCATAGACAT
CCTAGGGGAGTTTATCAGGACGCCCCGAGGTCATCGGTATCTGCTTGTCA
TTTCTGACAGATTCTCTAAGCTAACGAGAACTGTGCCGCTGAAGCGGATC
ACCGCCGCTACCGTCGCGAAAGCGTTCGTGACCCATTGGGTGTTCGTATA
TGGACCGCCGGTGCAGTTGTTATCCGACAACGGAAGGCAATTCGCATCAA
AGTTCTTTCAGGATGTATGTCGAATCCTTGATGTAAGGAATTTATTTGTT
ACTACGTATCACCCTCAGGGGAATGGCCAGGTGGAAAGGTTTAACCGCAC
GATACTCAACGCTTTGAGATCGTATGTTGCGGATCACCCCAAAAATTGGG
ACTTGTACACAGACGCTATCACGTATGCATACAACACCCAGGTACATCGG
GTTACATCGTTATCCCCATTCGAACTGGTACTGTCGAGGACACCGCCGCC
GGTCGCCATCGAGGCTCAACCGATGCTGTCGACGTACCCGTCACCGGGAT
TGTACCGAGAAGCCTGGAAGGAGTGGCTTACGAAGATGGTGCCGATAGCC
CGGAAAGCAATGGACAAAGCTCAACGCGTCTACAAGAAGGACTTTGACAA
TCGGGTTCGCAAACCTCTACCTCAGGTGGAGCCCGACGACTTCGTCTTCC
TTCGAAAGGAATACTACAATCCTGAAAAGGAACGTAGGCACAAACTTTCG
CCAATTGTGGACGGACCCTATCGTGTGGTTTCTGTAGACCCGAACACGGT
GGTATTGGATATCGCTAACCGCCACGAACGGATCTCCAGGGACTGCATCA
CACGAGCGCCCAACCCAAATGTGGAAGTGGTGTCGTCACCAACGCCCTCC
ACAGGGGATGATTCAACGGAAGTTAACCCGTCAGGCGGAGATTCGAACAC
CCGCCCCGTTATACTTCCGCACCTGGAACGTGGTTTAACCGACCTACCGG
AAACTTCGGATACTCTCGAACCTGGGCCCGCTCCCTCAAGAGCCCAGTCA
ACGAACTCTTACAGAGTTACTCCCCCACCGGAGGTAATCAAGCATCCTGG
CTCTCCGCCTAAGGAGGGGGATGAGGACTTAGTTCCTTCGCAGGACGATG
CTTCGGCGTCAGCCAGTCGCCCTAACAGGGAATCTAGTTCTCACAGTGAG
ACGGCGAGCCCGACCGAGCCGCCAAGAGAGAAGTCACAACCCCAGCGTAT
GGGTAGCGACATCACCGCCGACCCAGCCGAGCACGACGTCAGAAAAGATG
ACGAAACCCCGCCTAGGGAGAGTCGTGGGGAGAACGCCGCACCCGGAACG
CCTACAAAGCCGACGATCACCCGCCGCCGCGGACAAGACACTGAGGTGTC
GCACACTCAAACCCCGCTTTCTCGGGAACGAGCTGTGTCAGCGGACCCGC
ACGGGGAAGATCTCGACGACGAGGTTGACCAAATTTGGCTCTCCTTTATG
GAATGGGAATAG

protein sequence of Gchil3206.t1

>Gchil3206.t1 ID=Gchil3206.t1|Name=Gchil3206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=704bp
MRWRLRLSEFDFEILYKKGKLNTQADALSRLGTTAETEPYEDDDIPCFMV
SDLEGGAQPLTDDVCDDILVNESLDSPTGSFIPISSEEMIREQQLDPFCT
RIRARLNGGFQLPFEDDDQGYLIRTVGPRPRIVVPHTLQQRVLHLTHYVK
VCAHPGGRKLYLTLRRDFYWPTMAFDCYAVRRACANCAKNDVKLRKHSKK
LTLFQARAPLEFVAIDILGEFIRTPRGHRYLLVISDRFSKLTRTVPLKRI
TAATVAKAFVTHWVFVYGPPVQLLSDNGRQFASKFFQDVCRILDVRNLFV
TTYHPQGNGQVERFNRTILNALRSYVADHPKNWDLYTDAITYAYNTQVHR
VTSLSPFELVLSRTPPPVAIEAQPMLSTYPSPGLYREAWKEWLTKMVPIA
RKAMDKAQRVYKKDFDNRVRKPLPQVEPDDFVFLRKEYYNPEKERRHKLS
PIVDGPYRVVSVDPNTVVLDIANRHERISRDCITRAPNPNVEVVSSPTPS
TGDDSTEVNPSGGDSNTRPVILPHLERGLTDLPETSDTLEPGPAPSRAQS
TNSYRVTPPPEVIKHPGSPPKEGDEDLVPSQDDASASASRPNRESSSHSE
TASPTEPPREKSQPQRMGSDITADPAEHDVRKDDETPPRESRGENAAPGT
PTKPTITRRRGQDTEVSHTQTPLSRERAVSADPHGEDLDDEVDQIWLSFM
EWE*

mRNA from alignment at tig00004382_pilon:900771..902882-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3206.t1 ID=Gchil3206.t1|Name=Gchil3206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2112bp|location=Sequence derived from alignment at tig00004382_pilon:900771..902882- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTGGCGTCTCCGACTGTCGGAATTCGACTTTGAGATCCTGTACAA
GAAAGGGAAGCTGAACACTCAGGCTGATGCACTATCCCGCTTGGGAACCA
CAGCGGAAACGGAACCCTACGAGGACGATGACATCCCATGTTTTATGGTA
TCGGACCTCGAGGGAGGAGCTCAACCGCTGACGGATGATGTTTGTGACGA
TATACTCGTCAACGAGAGTCTGGATTCGCCGACCGGCTCTTTTATACCTA
TCTCTTCAGAGGAGATGATACGCGAGCAACAGCTCGACCCATTCTGTACA
CGGATTCGGGCTCGCCTCAACGGAGGATTTCAGTTACCTTTCGAGGACGA
CGATCAGGGTTACCTAATCAGGACCGTTGGACCTCGCCCGAGGATAGTGG
TGCCGCACACACTACAACAGAGGGTATTACACCTCACTCACTATGTGAAG
GTTTGCGCCCACCCCGGGGGAAGAAAACTGTACCTCACGTTGAGAAGGGA
CTTTTACTGGCCGACAATGGCATTCGATTGTTACGCCGTCAGACGGGCCT
GCGCCAATTGCGCCAAGAATGACGTCAAACTTCGGAAGCACTCTAAGAAG
TTGACGCTGTTCCAGGCACGGGCTCCACTCGAATTCGTGGCCATAGACAT
CCTAGGGGAGTTTATCAGGACGCCCCGAGGTCATCGGTATCTGCTTGTCA
TTTCTGACAGATTCTCTAAGCTAACGAGAACTGTGCCGCTGAAGCGGATC
ACCGCCGCTACCGTCGCGAAAGCGTTCGTGACCCATTGGGTGTTCGTATA
TGGACCGCCGGTGCAGTTGTTATCCGACAACGGAAGGCAATTCGCATCAA
AGTTCTTTCAGGATGTATGTCGAATCCTTGATGTAAGGAATTTATTTGTT
ACTACGTATCACCCTCAGGGGAATGGCCAGGTGGAAAGGTTTAACCGCAC
GATACTCAACGCTTTGAGATCGTATGTTGCGGATCACCCCAAAAATTGGG
ACTTGTACACAGACGCTATCACGTATGCATACAACACCCAGGTACATCGG
GTTACATCGTTATCCCCATTCGAACTGGTACTGTCGAGGACACCGCCGCC
GGTCGCCATCGAGGCTCAACCGATGCTGTCGACGTACCCGTCACCGGGAT
TGTACCGAGAAGCCTGGAAGGAGTGGCTTACGAAGATGGTGCCGATAGCC
CGGAAAGCAATGGACAAAGCTCAACGCGTCTACAAGAAGGACTTTGACAA
TCGGGTTCGCAAACCTCTACCTCAGGTGGAGCCCGACGACTTCGTCTTCC
TTCGAAAGGAATACTACAATCCTGAAAAGGAACGTAGGCACAAACTTTCG
CCAATTGTGGACGGACCCTATCGTGTGGTTTCTGTAGACCCGAACACGGT
GGTATTGGATATCGCTAACCGCCACGAACGGATCTCCAGGGACTGCATCA
CACGAGCGCCCAACCCAAATGTGGAAGTGGTGTCGTCACCAACGCCCTCC
ACAGGGGATGATTCAACGGAAGTTAACCCGTCAGGCGGAGATTCGAACAC
CCGCCCCGTTATACTTCCGCACCTGGAACGTGGTTTAACCGACCTACCGG
AAACTTCGGATACTCTCGAACCTGGGCCCGCTCCCTCAAGAGCCCAGTCA
ACGAACTCTTACAGAGTTACTCCCCCACCGGAGGTAATCAAGCATCCTGG
CTCTCCGCCTAAGGAGGGGGATGAGGACTTAGTTCCTTCGCAGGACGATG
CTTCGGCGTCAGCCAGTCGCCCTAACAGGGAATCTAGTTCTCACAGTGAG
ACGGCGAGCCCGACCGAGCCGCCAAGAGAGAAGTCACAACCCCAGCGTAT
GGGTAGCGACATCACCGCCGACCCAGCCGAGCACGACGTCAGAAAAGATG
ACGAAACCCCGCCTAGGGAGAGTCGTGGGGAGAACGCCGCACCCGGAACG
CCTACAAAGCCGACGATCACCCGCCGCCGCGGACAAGACACTGAGGTGTC
GCACACTCAAACCCCGCTTTCTCGGGAACGAGCTGTGTCAGCGGACCCGC
ACGGGGAAGATCTCGACGACGAGGTTGACCAAATTTGGCTCTCCTTTATG
GAATGGGAATAG

Coding sequence (CDS) from alignment at tig00004382_pilon:900771..902882-

>Gchil3206.t1 ID=Gchil3206.t1|Name=Gchil3206.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2112bp|location=Sequence derived from alignment at tig00004382_pilon:900771..902882- (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTGGCGTCTCCGACTGTCGGAATTCGACTTTGAGATCCTGTACAA
GAAAGGGAAGCTGAACACTCAGGCTGATGCACTATCCCGCTTGGGAACCA
CAGCGGAAACGGAACCCTACGAGGACGATGACATCCCATGTTTTATGGTA
TCGGACCTCGAGGGAGGAGCTCAACCGCTGACGGATGATGTTTGTGACGA
TATACTCGTCAACGAGAGTCTGGATTCGCCGACCGGCTCTTTTATACCTA
TCTCTTCAGAGGAGATGATACGCGAGCAACAGCTCGACCCATTCTGTACA
CGGATTCGGGCTCGCCTCAACGGAGGATTTCAGTTACCTTTCGAGGACGA
CGATCAGGGTTACCTAATCAGGACCGTTGGACCTCGCCCGAGGATAGTGG
TGCCGCACACACTACAACAGAGGGTATTACACCTCACTCACTATGTGAAG
GTTTGCGCCCACCCCGGGGGAAGAAAACTGTACCTCACGTTGAGAAGGGA
CTTTTACTGGCCGACAATGGCATTCGATTGTTACGCCGTCAGACGGGCCT
GCGCCAATTGCGCCAAGAATGACGTCAAACTTCGGAAGCACTCTAAGAAG
TTGACGCTGTTCCAGGCACGGGCTCCACTCGAATTCGTGGCCATAGACAT
CCTAGGGGAGTTTATCAGGACGCCCCGAGGTCATCGGTATCTGCTTGTCA
TTTCTGACAGATTCTCTAAGCTAACGAGAACTGTGCCGCTGAAGCGGATC
ACCGCCGCTACCGTCGCGAAAGCGTTCGTGACCCATTGGGTGTTCGTATA
TGGACCGCCGGTGCAGTTGTTATCCGACAACGGAAGGCAATTCGCATCAA
AGTTCTTTCAGGATGTATGTCGAATCCTTGATGTAAGGAATTTATTTGTT
ACTACGTATCACCCTCAGGGGAATGGCCAGGTGGAAAGGTTTAACCGCAC
GATACTCAACGCTTTGAGATCGTATGTTGCGGATCACCCCAAAAATTGGG
ACTTGTACACAGACGCTATCACGTATGCATACAACACCCAGGTACATCGG
GTTACATCGTTATCCCCATTCGAACTGGTACTGTCGAGGACACCGCCGCC
GGTCGCCATCGAGGCTCAACCGATGCTGTCGACGTACCCGTCACCGGGAT
TGTACCGAGAAGCCTGGAAGGAGTGGCTTACGAAGATGGTGCCGATAGCC
CGGAAAGCAATGGACAAAGCTCAACGCGTCTACAAGAAGGACTTTGACAA
TCGGGTTCGCAAACCTCTACCTCAGGTGGAGCCCGACGACTTCGTCTTCC
TTCGAAAGGAATACTACAATCCTGAAAAGGAACGTAGGCACAAACTTTCG
CCAATTGTGGACGGACCCTATCGTGTGGTTTCTGTAGACCCGAACACGGT
GGTATTGGATATCGCTAACCGCCACGAACGGATCTCCAGGGACTGCATCA
CACGAGCGCCCAACCCAAATGTGGAAGTGGTGTCGTCACCAACGCCCTCC
ACAGGGGATGATTCAACGGAAGTTAACCCGTCAGGCGGAGATTCGAACAC
CCGCCCCGTTATACTTCCGCACCTGGAACGTGGTTTAACCGACCTACCGG
AAACTTCGGATACTCTCGAACCTGGGCCCGCTCCCTCAAGAGCCCAGTCA
ACGAACTCTTACAGAGTTACTCCCCCACCGGAGGTAATCAAGCATCCTGG
CTCTCCGCCTAAGGAGGGGGATGAGGACTTAGTTCCTTCGCAGGACGATG
CTTCGGCGTCAGCCAGTCGCCCTAACAGGGAATCTAGTTCTCACAGTGAG
ACGGCGAGCCCGACCGAGCCGCCAAGAGAGAAGTCACAACCCCAGCGTAT
GGGTAGCGACATCACCGCCGACCCAGCCGAGCACGACGTCAGAAAAGATG
ACGAAACCCCGCCTAGGGAGAGTCGTGGGGAGAACGCCGCACCCGGAACG
CCTACAAAGCCGACGATCACCCGCCGCCGCGGACAAGACACTGAGGTGTC
GCACACTCAAACCCCGCTTTCTCGGGAACGAGCTGTGTCAGCGGACCCGC
ACGGGGAAGATCTCGACGACGAGGTTGACCAAATTTGGCTCTCCTTTATG
GAATGGGAATAG