Gchil3088.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3088.t1
Unique NameGchil3088.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length488
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:37957..39420 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog314271.RB2654_08177
PFAMsGlyco_transf_7C
Max annot lvl28211|Alphaproteobacteria
Evalue4.45e-19
EggNOG OGsCOG1216@1|root,COG1216@2|Bacteria,1MZBS@1224|Proteobacteria,2UEUD@28211|Alphaproteobacteria
DescriptionN-terminal domain of galactosyltransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3088Gchil3088Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 37957..39420 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3088.t1.start1Gchil3088.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 37957..37959 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3088.t1.CDS1Gchil3088.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 37957..39420 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3088.t1.exon1Gchil3088.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 37957..39420 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3088.t1.stop1Gchil3088.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 39418..39420 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3088.t1Gchil3088.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 37957..39420 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3088.t1 ID=Gchil3088.t1|Name=Gchil3088.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=488bp
MQLFSQPRRDDPPRVDDDGAPPPAIAALPSALRARIAATTRALRAGESSR
VALTRAYAVPHAVAAVMTLQTARLLLWKLVLADELADMRASSCDSVRVHA
RVLFVHTQNGLGNRLRALASGLAMARATARVPVVVWESDPHLAAPFHEVL
TAERNASSLQGLLYDHLIVMDRFVDWTLVDHRNQSWHAVSYMEKDGPHAK
PDILMRFELPSHRPISVHHWLKNHPQQPPQLQSANATVQLTLSKPRPNRS
SHLIHSAKHVYFRSAYVAKTQPKSICARSIVNRQLALLQPSADVMQIVRQ
IDPKSLSPAIGVHIRSRSLARDNVDVRTRCEYTRVGARVTDYWRSRSSLR
VFVKKMQWAIRRKKSVKFFVASDDVAVVQALTARFGRDRILYIQRGCDDR
FEGCVKYAMADLICLSKTMKIYGSNWSSFSEAAGRLGGKSVFLSGHHFGR
VKGVARLWHQVQSDVYSKIDTVLKVWPSWLLLPWNRC*
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spliced messenger RNA

>Gchil3088.t1 ID=Gchil3088.t1|Name=Gchil3088.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00004382_pilon:37957..39420+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTTTTCTCACAACCGCGCCGCGACGATCCTCCCCGTGTGGACGA
CGATGGCGcgccgccgccagccatcgccgcgcttccgtctgcgctgcgcg
cgcgcatcgccgccaccacgcgcgccTTGCGCGCGGGGGAGTCGTCGCGT
GTGGCGCTCACGCGCGCCTATGCGGTGCCGCACGCTGTGGCGGCTGTGAT
GACGTTGCAGACTGCGCGTTTGCTGTTGTGGAAGCTTGTTTTGGCCGATG
AGTTGGCTGACATGCGTGCTTCATCTTGCGATTCCGTTCGCGTGCATGCG
CGCGTGCTCTTTGTGCACACACAGAATGGCTTGGGCAATCGTCTGCGCGC
TCTTGCTTCTGGGCTGGCTATGGCGCGCGCCACTGCTCGCGTTCCCGTCG
TCGTGTGGGAGTCGGATCCGCATCTCGCCGCCCCGTTTCACGAGGTGCTT
ACCGCTGAGCGCAATGCTTCCTCGTTGCAGGGCTTGCTGTATGACCATCT
TATTGTCATGGACCGCTTCGTGGATTGGACTCTGGTCGACCACCGCAATC
AATCGTGGCACGCTGTTAGCTACATGGAAAAAGATGGTCCCCACGCCAAG
CCGGACATCTTGATGCGCTTTGAGCTCCCGTCTCACCGCCCAATCTCCGT
GCACCACTGGCTGAAAAACCATCCGCAACAACCGCCGCAACTGCAAAGCG
CCAACGCCACCGTGCAGCTCACTCTTTCTAAACCCCGCCCTAACCGCTCG
AGTCATCTAATTCACTCCGCGAAGCATGTGTACTTTAGAAGTGCCTATGT
CGCAAAAACCCAACCCAAATCTATCTGTGCACGCTCCATCGTCAACCGCC
AGCTCGCCCTCTTGCAGCCAAGTGCTGACGTCATGCAAATCGTTCGCCAA
ATCGATCCCAAATCGCTCTCGCCAGCCATTGGAGTGCACATACGCTCCAG
AAGCCTGGCGAGGGACAACGTCGACGTTCGCACCCGCTGCGAGTACACCC
GCGTCGGCGCCCGCGTCACCGACTACTGGAGATCGCGCTCCAGTCTTCGC
GTTTTTGTCAAAAAGATGCAGTGGGCCATTCGACGTAAGAAAAGCGTAAA
GTTTTTCGTCGCCTCCGATGATGTTGCCGTCGTACAGGCCTTGACTGCAC
GTTTCGGCCGCGATCGAATTCTGTATATTCAGCGCGGCTGCGATGACCGC
TTTGAGGGCTGCGTCAAGTACGCCATGGCCGACCTCATTTGCTTGTCCAA
GACCATGAAGATCTACGGCTCCAATTGGAGCAGTTTTTCCGAGGCTGCCG
GCCGCCTTGGAGGGAAGAGCGTCTTCCTTAGTGGCCATCATTTCGGACGC
GTCAAAGGGGTTGCGCGTCTGTGGCACCAAGTGCAGTCTGATGTGTACTC
CAAAATTGACACCGTGCTCAAGGTATGGCCCTCATGGCTGCTATTGCCGT
GGAATCGGTGCTAA
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protein sequence of Gchil3088.t1

>Gchil3088.t1 ID=Gchil3088.t1|Name=Gchil3088.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=488bp
MQLFSQPRRDDPPRVDDDGAPPPAIAALPSALRARIAATTRALRAGESSR
VALTRAYAVPHAVAAVMTLQTARLLLWKLVLADELADMRASSCDSVRVHA
RVLFVHTQNGLGNRLRALASGLAMARATARVPVVVWESDPHLAAPFHEVL
TAERNASSLQGLLYDHLIVMDRFVDWTLVDHRNQSWHAVSYMEKDGPHAK
PDILMRFELPSHRPISVHHWLKNHPQQPPQLQSANATVQLTLSKPRPNRS
SHLIHSAKHVYFRSAYVAKTQPKSICARSIVNRQLALLQPSADVMQIVRQ
IDPKSLSPAIGVHIRSRSLARDNVDVRTRCEYTRVGARVTDYWRSRSSLR
VFVKKMQWAIRRKKSVKFFVASDDVAVVQALTARFGRDRILYIQRGCDDR
FEGCVKYAMADLICLSKTMKIYGSNWSSFSEAAGRLGGKSVFLSGHHFGR
VKGVARLWHQVQSDVYSKIDTVLKVWPSWLLLPWNRC*
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mRNA from alignment at tig00004382_pilon:37957..39420+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3088.t1 ID=Gchil3088.t1|Name=Gchil3088.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00004382_pilon:37957..39420+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCTTTTCTCACAACCGCGCCGCGACGATCCTCCCCGTGTGGACGA
CGATGGCGcgccgccgccagccatcgccgcgcttccgtctgcgctgcgcg
cgcgcatcgccgccaccacgcgcgccTTGCGCGCGGGGGAGTCGTCGCGT
GTGGCGCTCACGCGCGCCTATGCGGTGCCGCACGCTGTGGCGGCTGTGAT
GACGTTGCAGACTGCGCGTTTGCTGTTGTGGAAGCTTGTTTTGGCCGATG
AGTTGGCTGACATGCGTGCTTCATCTTGCGATTCCGTTCGCGTGCATGCG
CGCGTGCTCTTTGTGCACACACAGAATGGCTTGGGCAATCGTCTGCGCGC
TCTTGCTTCTGGGCTGGCTATGGCGCGCGCCACTGCTCGCGTTCCCGTCG
TCGTGTGGGAGTCGGATCCGCATCTCGCCGCCCCGTTTCACGAGGTGCTT
ACCGCTGAGCGCAATGCTTCCTCGTTGCAGGGCTTGCTGTATGACCATCT
TATTGTCATGGACCGCTTCGTGGATTGGACTCTGGTCGACCACCGCAATC
AATCGTGGCACGCTGTTAGCTACATGGAAAAAGATGGTCCCCACGCCAAG
CCGGACATCTTGATGCGCTTTGAGCTCCCGTCTCACCGCCCAATCTCCGT
GCACCACTGGCTGAAAAACCATCCGCAACAACCGCCGCAACTGCAAAGCG
CCAACGCCACCGTGCAGCTCACTCTTTCTAAACCCCGCCCTAACCGCTCG
AGTCATCTAATTCACTCCGCGAAGCATGTGTACTTTAGAAGTGCCTATGT
CGCAAAAACCCAACCCAAATCTATCTGTGCACGCTCCATCGTCAACCGCC
AGCTCGCCCTCTTGCAGCCAAGTGCTGACGTCATGCAAATCGTTCGCCAA
ATCGATCCCAAATCGCTCTCGCCAGCCATTGGAGTGCACATACGCTCCAG
AAGCCTGGCGAGGGACAACGTCGACGTTCGCACCCGCTGCGAGTACACCC
GCGTCGGCGCCCGCGTCACCGACTACTGGAGATCGCGCTCCAGTCTTCGC
GTTTTTGTCAAAAAGATGCAGTGGGCCATTCGACGTAAGAAAAGCGTAAA
GTTTTTCGTCGCCTCCGATGATGTTGCCGTCGTACAGGCCTTGACTGCAC
GTTTCGGCCGCGATCGAATTCTGTATATTCAGCGCGGCTGCGATGACCGC
TTTGAGGGCTGCGTCAAGTACGCCATGGCCGACCTCATTTGCTTGTCCAA
GACCATGAAGATCTACGGCTCCAATTGGAGCAGTTTTTCCGAGGCTGCCG
GCCGCCTTGGAGGGAAGAGCGTCTTCCTTAGTGGCCATCATTTCGGACGC
GTCAAAGGGGTTGCGCGTCTGTGGCACCAAGTGCAGTCTGATGTGTACTC
CAAAATTGACACCGTGCTCAAGGTATGGCCCTCATGGCTGCTATTGCCGT
GGAATCGGTGCTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:37957..39420+

>Gchil3088.t1 ID=Gchil3088.t1|Name=Gchil3088.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1464bp|location=Sequence derived from alignment at tig00004382_pilon:37957..39420+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCTTTTCTCACAACCGCGCCGCGACGATCCTCCCCGTGTGGACGA
CGATGGCGcgccgccgccagccatcgccgcgcttccgtctgcgctgcgcg
cgcgcatcgccgccaccacgcgcgccTTGCGCGCGGGGGAGTCGTCGCGT
GTGGCGCTCACGCGCGCCTATGCGGTGCCGCACGCTGTGGCGGCTGTGAT
GACGTTGCAGACTGCGCGTTTGCTGTTGTGGAAGCTTGTTTTGGCCGATG
AGTTGGCTGACATGCGTGCTTCATCTTGCGATTCCGTTCGCGTGCATGCG
CGCGTGCTCTTTGTGCACACACAGAATGGCTTGGGCAATCGTCTGCGCGC
TCTTGCTTCTGGGCTGGCTATGGCGCGCGCCACTGCTCGCGTTCCCGTCG
TCGTGTGGGAGTCGGATCCGCATCTCGCCGCCCCGTTTCACGAGGTGCTT
ACCGCTGAGCGCAATGCTTCCTCGTTGCAGGGCTTGCTGTATGACCATCT
TATTGTCATGGACCGCTTCGTGGATTGGACTCTGGTCGACCACCGCAATC
AATCGTGGCACGCTGTTAGCTACATGGAAAAAGATGGTCCCCACGCCAAG
CCGGACATCTTGATGCGCTTTGAGCTCCCGTCTCACCGCCCAATCTCCGT
GCACCACTGGCTGAAAAACCATCCGCAACAACCGCCGCAACTGCAAAGCG
CCAACGCCACCGTGCAGCTCACTCTTTCTAAACCCCGCCCTAACCGCTCG
AGTCATCTAATTCACTCCGCGAAGCATGTGTACTTTAGAAGTGCCTATGT
CGCAAAAACCCAACCCAAATCTATCTGTGCACGCTCCATCGTCAACCGCC
AGCTCGCCCTCTTGCAGCCAAGTGCTGACGTCATGCAAATCGTTCGCCAA
ATCGATCCCAAATCGCTCTCGCCAGCCATTGGAGTGCACATACGCTCCAG
AAGCCTGGCGAGGGACAACGTCGACGTTCGCACCCGCTGCGAGTACACCC
GCGTCGGCGCCCGCGTCACCGACTACTGGAGATCGCGCTCCAGTCTTCGC
GTTTTTGTCAAAAAGATGCAGTGGGCCATTCGACGTAAGAAAAGCGTAAA
GTTTTTCGTCGCCTCCGATGATGTTGCCGTCGTACAGGCCTTGACTGCAC
GTTTCGGCCGCGATCGAATTCTGTATATTCAGCGCGGCTGCGATGACCGC
TTTGAGGGCTGCGTCAAGTACGCCATGGCCGACCTCATTTGCTTGTCCAA
GACCATGAAGATCTACGGCTCCAATTGGAGCAGTTTTTCCGAGGCTGCCG
GCCGCCTTGGAGGGAAGAGCGTCTTCCTTAGTGGCCATCATTTCGGACGC
GTCAAAGGGGTTGCGCGTCTGTGGCACCAAGTGCAGTCTGATGTGTACTC
CAAAATTGACACCGTGCTCAAGGTATGGCCCTCATGGCTGCTATTGCCGT
GGAATCGGTGCTAA
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