Gchil3119.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3119.t1
Unique NameGchil3119.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length333
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:243307..244305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3119Gchil3119Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 243307..244305 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3119.t1.start1Gchil3119.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 243307..243309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3119.t1.CDS1Gchil3119.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 243307..244305 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3119.t1.exon1Gchil3119.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 243307..244305 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3119.t1.stop1Gchil3119.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 244303..244305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3119.t1Gchil3119.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 243307..244305 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3119.t1 ID=Gchil3119.t1|Name=Gchil3119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=333bp
MKLSKLRVPDLRKELKARGLDEKGIRPVLIRRLREAVQREQNAENEQSTQ
ADPQTANGDQPTSVGQNLAYSDTQQQAASEKCSAEVPPKAMREYKHEDKI
EARDPSPKRPYALNGRDGEPYSANKDTGKILPHMRPQYASETIGRPATEK
DKTEASPASPAQDLSPKKPQTTDKGATSTSPSPPDQKNGIKVLENDGTGA
PIEQPNMTASPSKNDKPTETKSSGNINSGDDVASVDRIRRRKKRFGIVMK
EAANGDPTDDQAVQRRRARFGIKALVNSSSKTSKQDRDQIALRRRAEKFG
LGGKKRATVDTSLSKEEIEKRLKRQKRFQSVS*
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spliced messenger RNA

>Gchil3119.t1 ID=Gchil3119.t1|Name=Gchil3119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00004382_pilon:243307..244305+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACTTTCCAAATTGCGCGTCCCCGATTTACGGAAGGAACTTAAGGC
TCGTGGACTCGATGAGAAAGGCATTCGCCCCGTCCTTATCAGACGACTAC
GTGAGGCTGTTCAACGCGAACAAAATGCTGAAAATGAGCAGAGCACTCAA
GCTGATCCACAAACTGCAAACGGTGACCAGCCAACAAGTGTAGGTCAGAA
TCTTGCGTATTCTGATACACAGCAGCAAGCGGCAAGTGAAAAATGCTCAG
CCGAAGTGCCGCCAAAAGCGATGAGAGAGTATAAACATGAGGACAAGATA
GAGGCTCGAGACCCGAGTCCGAAACGCCCCTACGCGCTAAACGGCAGAGA
CGGTGAACCATATTCAGCAAACAAAGATACTGGAAAAATTCTTCCCCATA
TGCGTCCGCAATACGCTTCGGAGACGATCGGTAGGCCAGCTACTGAAAAA
GACAAGACAGAAGCCAGTCCCGCTTCTCCTGCCCAAGATCTGTCGCCAAA
GAAGCCACAGACTACGGACAAAGGTGCAACCAGCACCTCGCCTTCCCCTC
CAGATCAAAAGAATGGCATTAAGGTCCTTGAAAACGATGGCACGGGAGCT
CCAATTGAGCAGCCAAATATGACTGCTTCACCAAGCAAGAATGACAAACC
GACTGAAACGAAATCTAGTGGTAATATAAACAGTGGCGATGACGTAGCTT
CGGTCGATCGCATTCGTCGCAGGAAGAAGCGATTCGGCATTGTCATGAAG
GAAGCTGCAAACGGCGATCCCACCGATGATCAGGCCGTCCAGAGAAGACG
TGCACGATTTGGGATCAAAGCCTTGGTGAACAGTTCGTCCAAGACTTCTA
AACAAGATCGTGATCAAATCGCGTTACGTCGTCGAGCGGAAAAGTTTGGT
CTTGGGGGGAAAAAACGCGCCACGGTTGACACTAGTTTGTCTAAGGAAGA
AATTGAGAAACGACTGAAGAGACAGAAACGGTTTCAAAGCGTTTCTTGA
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protein sequence of Gchil3119.t1

>Gchil3119.t1 ID=Gchil3119.t1|Name=Gchil3119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=333bp
MKLSKLRVPDLRKELKARGLDEKGIRPVLIRRLREAVQREQNAENEQSTQ
ADPQTANGDQPTSVGQNLAYSDTQQQAASEKCSAEVPPKAMREYKHEDKI
EARDPSPKRPYALNGRDGEPYSANKDTGKILPHMRPQYASETIGRPATEK
DKTEASPASPAQDLSPKKPQTTDKGATSTSPSPPDQKNGIKVLENDGTGA
PIEQPNMTASPSKNDKPTETKSSGNINSGDDVASVDRIRRRKKRFGIVMK
EAANGDPTDDQAVQRRRARFGIKALVNSSSKTSKQDRDQIALRRRAEKFG
LGGKKRATVDTSLSKEEIEKRLKRQKRFQSVS*
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mRNA from alignment at tig00004382_pilon:243307..244305+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3119.t1 ID=Gchil3119.t1|Name=Gchil3119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=999bp|location=Sequence derived from alignment at tig00004382_pilon:243307..244305+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAACTTTCCAAATTGCGCGTCCCCGATTTACGGAAGGAACTTAAGGC
TCGTGGACTCGATGAGAAAGGCATTCGCCCCGTCCTTATCAGACGACTAC
GTGAGGCTGTTCAACGCGAACAAAATGCTGAAAATGAGCAGAGCACTCAA
GCTGATCCACAAACTGCAAACGGTGACCAGCCAACAAGTGTAGGTCAGAA
TCTTGCGTATTCTGATACACAGCAGCAAGCGGCAAGTGAAAAATGCTCAG
CCGAAGTGCCGCCAAAAGCGATGAGAGAGTATAAACATGAGGACAAGATA
GAGGCTCGAGACCCGAGTCCGAAACGCCCCTACGCGCTAAACGGCAGAGA
CGGTGAACCATATTCAGCAAACAAAGATACTGGAAAAATTCTTCCCCATA
TGCGTCCGCAATACGCTTCGGAGACGATCGGTAGGCCAGCTACTGAAAAA
GACAAGACAGAAGCCAGTCCCGCTTCTCCTGCCCAAGATCTGTCGCCAAA
GAAGCCACAGACTACGGACAAAGGTGCAACCAGCACCTCGCCTTCCCCTC
CAGATCAAAAGAATGGCATTAAGGTCCTTGAAAACGATGGCACGGGAGCT
CCAATTGAGCAGCCAAATATGACTGCTTCACCAAGCAAGAATGACAAACC
GACTGAAACGAAATCTAGTGGTAATATAAACAGTGGCGATGACGTAGCTT
CGGTCGATCGCATTCGTCGCAGGAAGAAGCGATTCGGCATTGTCATGAAG
GAAGCTGCAAACGGCGATCCCACCGATGATCAGGCCGTCCAGAGAAGACG
TGCACGATTTGGGATCAAAGCCTTGGTGAACAGTTCGTCCAAGACTTCTA
AACAAGATCGTGATCAAATCGCGTTACGTCGTCGAGCGGAAAAGTTTGGT
CTTGGGGGGAAAAAACGCGCCACGGTTGACACTAGTTTGTCTAAGGAAGA
AATTGAGAAACGACTGAAGAGACAGAAACGGTTTCAAAGCGTTTCTTGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:243307..244305+

>Gchil3119.t1 ID=Gchil3119.t1|Name=Gchil3119.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=999bp|location=Sequence derived from alignment at tig00004382_pilon:243307..244305+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAACTTTCCAAATTGCGCGTCCCCGATTTACGGAAGGAACTTAAGGC
TCGTGGACTCGATGAGAAAGGCATTCGCCCCGTCCTTATCAGACGACTAC
GTGAGGCTGTTCAACGCGAACAAAATGCTGAAAATGAGCAGAGCACTCAA
GCTGATCCACAAACTGCAAACGGTGACCAGCCAACAAGTGTAGGTCAGAA
TCTTGCGTATTCTGATACACAGCAGCAAGCGGCAAGTGAAAAATGCTCAG
CCGAAGTGCCGCCAAAAGCGATGAGAGAGTATAAACATGAGGACAAGATA
GAGGCTCGAGACCCGAGTCCGAAACGCCCCTACGCGCTAAACGGCAGAGA
CGGTGAACCATATTCAGCAAACAAAGATACTGGAAAAATTCTTCCCCATA
TGCGTCCGCAATACGCTTCGGAGACGATCGGTAGGCCAGCTACTGAAAAA
GACAAGACAGAAGCCAGTCCCGCTTCTCCTGCCCAAGATCTGTCGCCAAA
GAAGCCACAGACTACGGACAAAGGTGCAACCAGCACCTCGCCTTCCCCTC
CAGATCAAAAGAATGGCATTAAGGTCCTTGAAAACGATGGCACGGGAGCT
CCAATTGAGCAGCCAAATATGACTGCTTCACCAAGCAAGAATGACAAACC
GACTGAAACGAAATCTAGTGGTAATATAAACAGTGGCGATGACGTAGCTT
CGGTCGATCGCATTCGTCGCAGGAAGAAGCGATTCGGCATTGTCATGAAG
GAAGCTGCAAACGGCGATCCCACCGATGATCAGGCCGTCCAGAGAAGACG
TGCACGATTTGGGATCAAAGCCTTGGTGAACAGTTCGTCCAAGACTTCTA
AACAAGATCGTGATCAAATCGCGTTACGTCGTCGAGCGGAAAAGTTTGGT
CTTGGGGGGAAAAAACGCGCCACGGTTGACACTAGTTTGTCTAAGGAAGA
AATTGAGAAACGACTGAAGAGACAGAAACGGTTTCAAAGCGTTTCTTGA
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