Gchil3224.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3224.t1
Unique NameGchil3224.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length242
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1169572..1170297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS188CT
PFAMsCpn10
Max annot lvl2759|Eukaryota
KEGG koko:K04078
Evalue1.85e-48
EggNOG OGsCOG0234@1|root,KOG1641@2759|Eukaryota
Descriptionchaperone cofactor-dependent protein refolding
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3224Gchil3224Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 1169572..1170297 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3224.t1.start1Gchil3224.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 1169572..1169574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3224.t1.CDS1Gchil3224.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 1169572..1170297 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3224.t1.exon1Gchil3224.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 1169572..1170297 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3224.t1.stop1Gchil3224.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 1170295..1170297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3224.t1Gchil3224.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 1169572..1170297 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3224.t1 ID=Gchil3224.t1|Name=Gchil3224.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=242bp
MNRVNLAFVSGIPLSTRPNRHLNHVDKRPTMTAAAASHTLNGKSISGPLQ
PVAHNILVKVAEAPDSTAGGLFLAASAKEKPTYGEAIGVGPGKYFPNGQK
VPMDIEKGDYVLYGKYGGTDLDYDGDKHTIITQDDILCKLENGQYDASAV
LPVQDRLLVKVDQAPEETSSGILLSKTSQDKSTSGKIVAMGPGRFMENGK
MEPLAFSIGDTVYYGKYSGAEVEFGGEAHMMIRMADVYAKL*
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spliced messenger RNA

>Gchil3224.t1 ID=Gchil3224.t1|Name=Gchil3224.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00004382_pilon:1169572..1170297+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACAGAGTAAATCTCGCCTTCGTCTCCGGAATTCCGCTGTCAACCCG
ACCGAATCGTCATCTGAATCATGTCGACAAGAGACCAACTATGACTGCCG
CCGCAGCCTCGCACACGTTGAATGGCAAATCAATCTCGGGACCGTTACAG
CCAGTCGCGCACAACATTCTCGTCAAAGTTGCAGAGGCCCCTGATTCTAC
TGCCGGCGGCCTTTTTCTCGCTGCTTCTGCCAAGGAAAAGCCCACGTACG
GCGAGGCGATTGGGGTGGGTCCCGGCAAGTACTTTCCCAACGGACAGAAA
GTTCCCATGGACATTGAAAAGGGTGATTATGTCTTGTATGGGAAGTACGG
TGGTACTGATCTTGACTACGATGGTGACAAGCATACTATCATCACTCAGG
ATGACATTTTGTGCAAGCTAGAAAATGGCCAGTACGATGCGTCCGCTGTG
CTTCCAGTTCAAGACAGGCTATTAGTCAAGGTAGACCAAGCTCCCGAAGA
AACATCATCTGGAATACTTTTGTCCAAAACAAGTCAGGACAAATCAACGA
GTGGAAAGATTGTTGCCATGGGTCCTGGACGCTTTATGGAGAACGGCAAA
ATGGAACCTCTGGCTTTTTCAATTGGTGACACAGTGTACTATGGAAAATA
TAGTGGCGCGGAGGTTGAGTTCGGTGGGGAAGCCCATATGATGATTCGTA
TGGCTGATGTCTATGCTAAACTTTAG
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protein sequence of Gchil3224.t1

>Gchil3224.t1 ID=Gchil3224.t1|Name=Gchil3224.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=242bp
MNRVNLAFVSGIPLSTRPNRHLNHVDKRPTMTAAAASHTLNGKSISGPLQ
PVAHNILVKVAEAPDSTAGGLFLAASAKEKPTYGEAIGVGPGKYFPNGQK
VPMDIEKGDYVLYGKYGGTDLDYDGDKHTIITQDDILCKLENGQYDASAV
LPVQDRLLVKVDQAPEETSSGILLSKTSQDKSTSGKIVAMGPGRFMENGK
MEPLAFSIGDTVYYGKYSGAEVEFGGEAHMMIRMADVYAKL*
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mRNA from alignment at tig00004382_pilon:1169572..1170297+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3224.t1 ID=Gchil3224.t1|Name=Gchil3224.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00004382_pilon:1169572..1170297+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACAGAGTAAATCTCGCCTTCGTCTCCGGAATTCCGCTGTCAACCCG
ACCGAATCGTCATCTGAATCATGTCGACAAGAGACCAACTATGACTGCCG
CCGCAGCCTCGCACACGTTGAATGGCAAATCAATCTCGGGACCGTTACAG
CCAGTCGCGCACAACATTCTCGTCAAAGTTGCAGAGGCCCCTGATTCTAC
TGCCGGCGGCCTTTTTCTCGCTGCTTCTGCCAAGGAAAAGCCCACGTACG
GCGAGGCGATTGGGGTGGGTCCCGGCAAGTACTTTCCCAACGGACAGAAA
GTTCCCATGGACATTGAAAAGGGTGATTATGTCTTGTATGGGAAGTACGG
TGGTACTGATCTTGACTACGATGGTGACAAGCATACTATCATCACTCAGG
ATGACATTTTGTGCAAGCTAGAAAATGGCCAGTACGATGCGTCCGCTGTG
CTTCCAGTTCAAGACAGGCTATTAGTCAAGGTAGACCAAGCTCCCGAAGA
AACATCATCTGGAATACTTTTGTCCAAAACAAGTCAGGACAAATCAACGA
GTGGAAAGATTGTTGCCATGGGTCCTGGACGCTTTATGGAGAACGGCAAA
ATGGAACCTCTGGCTTTTTCAATTGGTGACACAGTGTACTATGGAAAATA
TAGTGGCGCGGAGGTTGAGTTCGGTGGGGAAGCCCATATGATGATTCGTA
TGGCTGATGTCTATGCTAAACTTTAG
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Coding sequence (CDS) from alignment at tig00004382_pilon:1169572..1170297+

>Gchil3224.t1 ID=Gchil3224.t1|Name=Gchil3224.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=726bp|location=Sequence derived from alignment at tig00004382_pilon:1169572..1170297+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACAGAGTAAATCTCGCCTTCGTCTCCGGAATTCCGCTGTCAACCCG
ACCGAATCGTCATCTGAATCATGTCGACAAGAGACCAACTATGACTGCCG
CCGCAGCCTCGCACACGTTGAATGGCAAATCAATCTCGGGACCGTTACAG
CCAGTCGCGCACAACATTCTCGTCAAAGTTGCAGAGGCCCCTGATTCTAC
TGCCGGCGGCCTTTTTCTCGCTGCTTCTGCCAAGGAAAAGCCCACGTACG
GCGAGGCGATTGGGGTGGGTCCCGGCAAGTACTTTCCCAACGGACAGAAA
GTTCCCATGGACATTGAAAAGGGTGATTATGTCTTGTATGGGAAGTACGG
TGGTACTGATCTTGACTACGATGGTGACAAGCATACTATCATCACTCAGG
ATGACATTTTGTGCAAGCTAGAAAATGGCCAGTACGATGCGTCCGCTGTG
CTTCCAGTTCAAGACAGGCTATTAGTCAAGGTAGACCAAGCTCCCGAAGA
AACATCATCTGGAATACTTTTGTCCAAAACAAGTCAGGACAAATCAACGA
GTGGAAAGATTGTTGCCATGGGTCCTGGACGCTTTATGGAGAACGGCAAA
ATGGAACCTCTGGCTTTTTCAATTGGTGACACAGTGTACTATGGAAAATA
TAGTGGCGCGGAGGTTGAGTTCGGTGGGGAAGCCCATATGATGATTCGTA
TGGCTGATGTCTATGCTAAACTTTAG
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