Gchil3225.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3225.t1
Unique Name	Gchil3225.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	280

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:1170924..1171763 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707208.1
PFAMs	tRNA_bind
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01874
KEGG Reaction	R03659,R04773
KEGG Pathway	ko00450,ko00970,map00450,map00970
KEGG Module	M00359,M00360
Evalue	1.6e-52
EggNOG OGs	COG0143@1\|root,KOG2241@2759\|Eukaryota
EC	6.1.1.10
Description	tRNA binding
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3225	Gchil3225	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 1170924..1171763 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3225.t1.start1	Gchil3225.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 1170924..1170926 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3225.t1.CDS1	Gchil3225.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 1170924..1171763 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3225.t1.exon1	Gchil3225.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 1170924..1171763 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3225.t1.stop1	Gchil3225.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 1171761..1171763 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3225.t1	Gchil3225.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 1170924..1171763 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:1170924..1171763+
coding sequence from alignment at tig00004382_pilon:1170924..1171763+

mRNA sequence

>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=280bp
MNNTGFIASTATALWRSSVAKISTEAVGERMVSLVWSGGPSSAFTVLYAP
VGASFRSRRVVAHPRVNLIGLRPGVPYEVQVTGNGFDASTTFTTNATAQS
PGPVDTEGGSPELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEE
EPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNED
HTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNE
KGVAMFEDVPFLTSAGACFSPEQLVGSIS*

spliced messenger RNA

>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00004382_pilon:1170924..1171763+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAACACGGGGTTCATCGCCTCCACGGCAACTGCTTTGTGGCGCTC
ATCGGTGGCCAAGATATCCACAGAAGCCGTTGGAGAGCGCATGGTTTCTC
TGGTGTGGTCAGGGGGGCCAAGCAGCGCCTTCACAGTTTTGTACGCACCA
GTTGGTGCCTCGTTTCGATCACGGAGAGTTGTTGCTCATCCTCGAGTAAA
TCTCATTGGCCTAAGACCAGGTGTACCGTACGAAGTTCAAGTGACAGGCA
ATGGATTCGACGCGTCAACCACTTTCACGACTAATGCCACAGCGCAATCT
CCCGGCCCCGTAGATACTGAGGGAGGCTCACCTGAGCTGCCCATGACGGA
AGTTTCCCGCCTTGAGATAAGAGTTGGTAAGATTGTGCAGTGTGAAAAAC
ATCCCGATGCGGATTCCCTGTACGTCGAGAAAATTGATGTTGGAGAGGAA
GAACCTCGCACTATTGTTTCGGGGCTTGTGAAGTACGTACCGCTGGAGAA
AATGGTTGGGCGTACTGTGATTGTGCTGTGCAACTTGAAACCAAGAGCTA
TGCGAGGCGTAACCAGTCACGGAATGCTTCTATGCGTTTCAAATGAGGAT
CACACTATCGTTGATCCTTTATCGGCGCCGACTGATGCTCAAATCGGGGA
GCTCATTACCTTCGAAGGGCATAGAGCGGCCCCTATTGATCCGGGCAACA
GGGCGACAAAGGCGTTCGACAGAATCGCCGATGGCCTGAAAACGAATGAA
AAAGGTGTAGCCATGTTTGAAGATGTTCCATTTCTGACTTCGGCCGGAGC
GTGCTTTTCCCCGGAACAGCTTGTTGGTTCTATATCCTAA

protein sequence of Gchil3225.t1

>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=280bp
MNNTGFIASTATALWRSSVAKISTEAVGERMVSLVWSGGPSSAFTVLYAP
VGASFRSRRVVAHPRVNLIGLRPGVPYEVQVTGNGFDASTTFTTNATAQS
PGPVDTEGGSPELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEE
EPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNED
HTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNE
KGVAMFEDVPFLTSAGACFSPEQLVGSIS*

mRNA from alignment at tig00004382_pilon:1170924..1171763+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=840bp|location=Sequence derived from alignment at tig00004382_pilon:1170924..1171763+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATAACACGGGGTTCATCGCCTCCACGGCAACTGCTTTGTGGCGCTC
ATCGGTGGCCAAGATATCCACAGAAGCCGTTGGAGAGCGCATGGTTTCTC
TGGTGTGGTCAGGGGGGCCAAGCAGCGCCTTCACAGTTTTGTACGCACCA
GTTGGTGCCTCGTTTCGATCACGGAGAGTTGTTGCTCATCCTCGAGTAAA
TCTCATTGGCCTAAGACCAGGTGTACCGTACGAAGTTCAAGTGACAGGCA
ATGGATTCGACGCGTCAACCACTTTCACGACTAATGCCACAGCGCAATCT
CCCGGCCCCGTAGATACTGAGGGAGGCTCACCTGAGCTGCCCATGACGGA
AGTTTCCCGCCTTGAGATAAGAGTTGGTAAGATTGTGCAGTGTGAAAAAC
ATCCCGATGCGGATTCCCTGTACGTCGAGAAAATTGATGTTGGAGAGGAA
GAACCTCGCACTATTGTTTCGGGGCTTGTGAAGTACGTACCGCTGGAGAA
AATGGTTGGGCGTACTGTGATTGTGCTGTGCAACTTGAAACCAAGAGCTA
TGCGAGGCGTAACCAGTCACGGAATGCTTCTATGCGTTTCAAATGAGGAT
CACACTATCGTTGATCCTTTATCGGCGCCGACTGATGCTCAAATCGGGGA
GCTCATTACCTTCGAAGGGCATAGAGCGGCCCCTATTGATCCGGGCAACA
GGGCGACAAAGGCGTTCGACAGAATCGCCGATGGCCTGAAAACGAATGAA
AAAGGTGTAGCCATGTTTGAAGATGTTCCATTTCTGACTTCGGCCGGAGC
GTGCTTTTCCCCGGAACAGCTTGTTGGTTCTATATCCTAA

Coding sequence (CDS) from alignment at tig00004382_pilon:1170924..1171763+

>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=840bp|location=Sequence derived from alignment at tig00004382_pilon:1170924..1171763+ (Gracilaria chilensis NLEC103_M9 male)
ATGAATAACACGGGGTTCATCGCCTCCACGGCAACTGCTTTGTGGCGCTC
ATCGGTGGCCAAGATATCCACAGAAGCCGTTGGAGAGCGCATGGTTTCTC
TGGTGTGGTCAGGGGGGCCAAGCAGCGCCTTCACAGTTTTGTACGCACCA
GTTGGTGCCTCGTTTCGATCACGGAGAGTTGTTGCTCATCCTCGAGTAAA
TCTCATTGGCCTAAGACCAGGTGTACCGTACGAAGTTCAAGTGACAGGCA
ATGGATTCGACGCGTCAACCACTTTCACGACTAATGCCACAGCGCAATCT
CCCGGCCCCGTAGATACTGAGGGAGGCTCACCTGAGCTGCCCATGACGGA
AGTTTCCCGCCTTGAGATAAGAGTTGGTAAGATTGTGCAGTGTGAAAAAC
ATCCCGATGCGGATTCCCTGTACGTCGAGAAAATTGATGTTGGAGAGGAA
GAACCTCGCACTATTGTTTCGGGGCTTGTGAAGTACGTACCGCTGGAGAA
AATGGTTGGGCGTACTGTGATTGTGCTGTGCAACTTGAAACCAAGAGCTA
TGCGAGGCGTAACCAGTCACGGAATGCTTCTATGCGTTTCAAATGAGGAT
CACACTATCGTTGATCCTTTATCGGCGCCGACTGATGCTCAAATCGGGGA
GCTCATTACCTTCGAAGGGCATAGAGCGGCCCCTATTGATCCGGGCAACA
GGGCGACAAAGGCGTTCGACAGAATCGCCGATGGCCTGAAAACGAATGAA
AAAGGTGTAGCCATGTTTGAAGATGTTCCATTTCTGACTTCGGCCGGAGC
GTGCTTTTCCCCGGAACAGCTTGTTGGTTCTATATCCTAA