Gchil3225.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3225.t1
Unique NameGchil3225.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length280
Homology
BLAST of Gchil3225.t1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 452 bits (1162), Expect = 6.510e-159
Identity = 216/279 (77.42%), Postives = 250/279 (89.61%), Query Frame = 0
Query:    1 MNNTGFIASTATALWRSSVAKISTEAVGERMVSLVWSGGPSSAFTVLYAPVGASFRSRRVVAHPRVNLIGLRPGVPYEVQVTGNGFDASTTFTTNATAQSPGPVDTEGGSPELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNEDHTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNEKGVAMFEDVPFLTSAGACFSPEQLVGSIS 279
            M + GF+AS+ATALWRSS AKIST+A+GERMVSLVWSG P+S +TVLY+P+GA FRSRRVVAHPRVNL GL+PG PY+V+VTG+ FD+ST+FTT ATAQ+P  V     +P+LP+TE+SRLEIRVGKI++CEKHPDAD+LYVEK+DVGEEEPRTIVSGLVKY+PLEKMVGR+V+VLCNLKPRAMRGVTSHGMLLC SNEDHT+VDPL AP D  IGEL+TFEGH++APIDP NRATKAFDR+ADGL TNE GVAMFEDVPF TSAG CFS E ++GSIS
Sbjct:    1 MKSVGFVASSATALWRSSAAKISTDAIGERMVSLVWSGKPASTYTVLYSPIGAKFRSRRVVAHPRVNLKGLKPGTPYDVRVTGDAFDSSTSFTTVATAQAPAAVGDGDSAPDLPLTELSRLEIRVGKIIECEKHPDADTLYVEKVDVGEEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKSAPIDPSNRATKAFDRVADGLSTNEAGVAMFEDVPFSTSAGPCFSAENVIGSIS 279          
BLAST of Gchil3225.t1 vs. uniprot
Match: A0A7S1TKX4_9RHOD (Hypothetical protein n=2 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TKX4_9RHOD)

HSP 1 Score: 264 bits (674), Expect = 5.470e-84
Identity = 150/293 (51.19%), Postives = 186/293 (63.48%), Query Frame = 0
Query:   15 WRSSVA----KISTEAVGERM-VSLVWSGGPSSA---FTVLYAPV---GASFRSRRVVAHPRVNLIGLRPGVPYEVQVT---GNGFDASTTFTTNATAQSPGPVDTEGGSP--------------ELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNEDHTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNEKGVAMFEDVPFLTSAGACFSPEQLVGSIS 279
            W S VA    +++ E+ G+   +   W G    A   F V Y+PV    A   S R V+ P V L G+RP V Y   +    G+  +   T      A S G +D  G  P              + P+TE SRLEIRVG+I++CEKHPDAD+LYVEK+DVGE E RTIVSGLVKYVPL++M+GRTV+VLCNLKPRAMRGVTS GMLLC SNEDHT VDPL+AP D  IG LIT  GHR+AP++ GNRA+KAFDR+A   +T+  G+A  ED  F T  G C+SP +L GS+S
Sbjct:   42 WVSGVAVASLQVTLESHGDATTLRWEWDGSREEASHGFRVRYSPVEMAAAGIWSWRTVSQPMVRLAGMRPAVSYTAGIQPLFGSAANEWRTTQFRTHAISGGEIDAVGQDPVGVPAGEGGVDSGNDAPVTEFSRLEIRVGRILECEKHPDADTLYVEKVDVGEPETRTIVSGLVKYVPLDEMIGRTVVVLCNLKPRAMRGVTSFGMLLCASNEDHTEVDPLTAPEDTPIGTLITAPGHRSAPVEAGNRASKAFDRVAAQFRTDGDGIAYVEDAAFSTPNGPCYSPRKLQGSVS 334          
BLAST of Gchil3225.t1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 262 bits (669), Expect = 7.740e-84
Identity = 142/269 (52.79%), Postives = 183/269 (68.03%), Query Frame = 0
Query:   18 SVAKISTEAVGERMVSLVWSGGPSSAFTVLYAPVG--ASFRSRRVVAHPRVNLIGLRPGVPYEVQVT---GNGFDASTTFTTNA--TAQSPGPVDTEGGSPELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNEDHTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNEKGVAMFEDVPFLTSAGACFSPEQLVGSIS 279
            S   IS + +G   V L W    S A+ V Y      ASFR+   V    V L GL PG  Y++ ++        +  +FTT +  T +S G  ++E  + +LP+TE+SRLEIR G +VQC+KHP+AD+LYVE IDVGE+EPRTIVSGLVK++  E++ GR V+VLCNLKPR MRG+ S GMLLC SN DH+ VDPLS P +   GELITF+GH++APIDPGNRATKAFDR+AD L TNE G+A ++D  F T  G C+SP +LVG +S
Sbjct:   26 SADNISFQNIGLGSVLLSWPASGSRAYRVAYKSDSNPASFRT---VTRSSVILKGLSPGSSYDMSISELDSKKLLSRASFTTMSAETPESAG-AESEKQAEDLPLTELSRLEIRAGTVVQCKKHPEADTLYVETIDVGEQEPRTIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSEVDPLSPPEECGNGELITFDGHKSAPIDPGNRATKAFDRVADDLSTNEDGIAQYQDAAFKTPFGPCYSPRKLVGGVS 290          
BLAST of Gchil3225.t1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 257 bits (656), Expect = 1.080e-82
Identity = 120/168 (71.43%), Postives = 144/168 (85.71%), Query Frame = 0
Query:  112 ELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNEDHTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNEKGVAMFEDVPFLTSAGACFSPEQLVGSIS 279
            ELP+TE+SRLEIRVGK+V+CE+HPDAD+LYVEK+DVGE+EPRTIVSGLV ++  E++ GRTVIVLCNLKPRAMRG+ SHGMLLC SNEDHT VDPL+AP DA IG LITFEGHRAAP+D GNRA+KAFD++A    T+  G+A F   PF+T AGAC+SP +L GS+S
Sbjct:   65 ELPLTELSRLEIRVGKVVECERHPDADTLYVEKVDVGEDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRAAPMDAGNRASKAFDKVASEFNTDADGIARFNATPFMTEAGACYSPAKLQGSVS 232          
BLAST of Gchil3225.t1 vs. uniprot
Match: A0A5J4Z2W6_PORPP (Putative methionine--tRNA ligase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z2W6_PORPP)

HSP 1 Score: 243 bits (619), Expect = 9.840e-77
Identity = 116/168 (69.05%), Postives = 141/168 (83.93%), Query Frame = 0
Query:  113 LPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEEE-PRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNEDHTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNEKGVAMFEDVPFLTSAGACFSPEQLVGSIS 279
            LP+TE+SRLEIRVGKI++CEKHP+ADSLYVE++DVG+E   R IVSGLV +VPLE+MV RTVIVLCNLKPR MRG++SHGMLLC SNEDH+ VDPL+AP    IG L+TFEGHR+ P   GNRA+KAFD++A  L+T+  GVAMFE VPF T +G CFSP++LVG +S
Sbjct:   90 LPLTELSRLEIRVGKIIKCEKHPEADSLYVEEVDVGDESGARVIVSGLVSFVPLEEMVDRTVIVLCNLKPRNMRGISSHGMLLCASNEDHSQVDPLTAPEGVPIGALVTFEGHRSEPAPAGNRASKAFDKVAKSLRTDATGVAMFEQVPFATPSGPCFSPKKLVGPVS 257          
BLAST of Gchil3225.t1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 208 bits (530), Expect = 5.490e-62
Identity = 118/241 (48.96%), Postives = 152/241 (63.07%), Query Frame = 0
Query:   40 PSSAFTVLYAPVGASFRSRRVVAHPRVNLIGLRPGVPYEVQVTGNGFDASTTFTTNATAQSPGPVDTEGGSPELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEEE-PRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNEDHTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNEKGVAMFEDVPFLTSAGACFSPEQLVGSIS 279
            PS A+ + Y+  G   R           + GL  G  Y+V V     +              G V     +P+  +TE+SRLEIR GKI++  +HP+AD LYVEKID+GE + PRTIVSGLVKY   E+++GR V+VL NLKPRA++G+TSHGMLLC SNEDHT+V PLS P    +GELITFEGHRAAP  PGNRA KAFDR+A+ L   E  +A ++ +PF+TS G   +   + GSIS
Sbjct:  125 PSHAYRIDYSRDGVPNRLTLGGTSREAMIRGLHAGSQYDVAVVRVEREGLAEKVVGRARLETGKVVE---APKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRAAPEPPGNRAGKAFDRVAEELGAGEDMIATYKGIPFMTSKGPVTT--GMAGSIS 360          
BLAST of Gchil3225.t1 vs. uniprot
Match: A0A7S0XDL6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL6_9STRA)

HSP 1 Score: 200 bits (509), Expect = 1.080e-60
Identity = 102/170 (60.00%), Postives = 131/170 (77.06%), Query Frame = 0
Query:  111 PELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEEE-PRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNEDHTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNEKGVAMFEDVPFLTSAGACFSPEQLVGSIS 279
            PEL  TE+SRLEIRVGKIV+  +HP+AD LYVEKID+GE   PRTIVSGLV++  +++++   VIVLCNLKPRA++G+TS+GM+LC +++D T VDPL  P DA IG+LITFEGH + P++PGNRATKAF +IADG   NE+GVA +  +PF T  G   S   L+G IS
Sbjct:   50 PEL--TELSRLEIRVGKIVEVGRHPEADGLYVEKIDLGEPTGPRTIVSGLVQFCTVDRLLNNNVIVLCNLKPRALKGITSNGMVLCTTSKDETKVDPLIPPPDAPIGQLITFEGHLSEPVEPGNRATKAFTKIADGFYVNEQGVATYNGIPFSTPNGPVTS--TLIGKIS 215          
BLAST of Gchil3225.t1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.100e-59
Identity = 107/181 (59.12%), Postives = 128/181 (70.72%), Query Frame = 0
Query:  103 PVDT----EGGSPELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNEDHTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNEKGVAMFEDVPFLTSAGACFSPEQLVGSIS 279
            PVDT    E  +P   + E SRLEIRVGKIV    HPDAD LYVEKID GE+EPRTIVSGLVKY+  E ++ R+V+VL NLKPRAMRG+TSHGMLLC SNEDH+ V PLS P  +  GELIT EG  + P++P NRA+KAFD++A  L  N+   A F+  PFLT  G C S  +  G+IS
Sbjct:   67 PVDTDAKEEAAAPAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCGEDEPRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQPLEPCNRASKAFDKVAKDLYVNDDLQATFDGKPFLTPNGPCTSTMK--GAIS 245          
BLAST of Gchil3225.t1 vs. uniprot
Match: A0A6H5KCD4_9PHAE (tRNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD4_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 3.690e-58
Identity = 101/161 (62.73%), Postives = 120/161 (74.53%), Query Frame = 0
Query:  115 MTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNEDHTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNEK-----GVAMFEDVPFLTSAGACFS 270
            M E+SRLEIRVG+ ++C KHPDADSLYVE ID GE EPRTIVSGLV YVP ++M GR V+ LCNL  RAMRGVTS GMLLC SN+DH+ VDPLS P  A+IGELITFEG  +AP  P + A++A+    +G+KT E      GVA ++  P LTSAGAC S
Sbjct:    1 MMELSRLEIRVGRCLECSKHPDADSLYVETIDFGEGEPRTIVSGLVAYVPEDEMRGRMVVGLCNLPSRAMRGVTSSGMLLCASNDDHSSVDPLSPPEGAKIGELITFEGVLSAPAPPSSGASRAWSATREGMKTAEATADGVGVAGWDGRPMLTSAGACTS 161          
BLAST of Gchil3225.t1 vs. uniprot
Match: A0A0G4EPM0_VITBC (Tryptophan--tRNA ligase n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EPM0_VITBC)

HSP 1 Score: 198 bits (503), Expect = 1.360e-55
Identity = 99/159 (62.26%), Postives = 121/159 (76.10%), Query Frame = 0
Query:  107 EGGSPELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEEEPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNEDHTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNEKGVAMFEDVPFLTSA 265
            E GS E    ++S LEIRVG+I++ E+HPDADSLYVEK+D+GE EPRTIVSGLV Y+  E++ GR VIVLCNLKPRAMRG+ S GMLLC S+ D T V PLS P  A +GEL+TF+G  + P+ PGN+A KAFDR+A+ L   E+GVA F  VPF TSA
Sbjct:  447 EEGSGEREKGDISLLEIRVGRILEVERHPDADSLYVEKVDLGEGEPRTIVSGLVPYLSQEELQGRNVIVLCNLKPRAMRGIKSEGMLLCSSSPDGTRVAPLSPPEGAALGELVTFDGWASEPVAPGNKAGKAFDRVAEDLSVGEQGVATFRSVPFQTSA 605          
The following BLAST results are available for this feature:
BLAST of Gchil3225.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IUX7_9FLOR6.510e-15977.42Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S1TKX4_9RHOD5.470e-8451.19Hypothetical protein n=2 Tax=Compsopogon caeruleus... [more]
A0A7S0FZY8_9RHOD7.740e-8452.79Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0ZE83_9RHOD1.080e-8271.43Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A5J4Z2W6_PORPP9.840e-7769.05Putative methionine--tRNA ligase n=1 Tax=Porphyrid... [more]
W7U6C4_9STRA5.490e-6248.96Endothelial monocyte-activating polypeptide ii pro... [more]
A0A7S0XDL6_9STRA1.080e-6060.00Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S2V4I0_9STRA1.100e-5959.12Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6H5KCD4_9PHAE3.690e-5862.73tRNA-binding domain-containing protein n=1 Tax=Ect... [more]
A0A0G4EPM0_VITBC1.360e-5562.26Tryptophan--tRNA ligase n=3 Tax=Vitrella brassicaf... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 117..278
e-value: 2.2E-56
score: 192.3
NoneNo IPR availablePANTHERPTHR11586TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBERcoord: 107..274
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..279
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availableCDDcd02799tRNA_bind_EMAP-II_likecoord: 118..220
e-value: 4.88391E-61
score: 186.665
IPR002547tRNA-binding domainPFAMPF01588tRNA_bindcoord: 123..217
e-value: 5.8E-33
score: 112.9
IPR002547tRNA-binding domainPROSITEPS50886TRBDcoord: 117..220
score: 33.682648
IPR003961Fibronectin type IIICDDcd00063FN3coord: 17..82
e-value: 0.0062575
score: 33.2387
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 117..271
IPR036116Fibronectin type III superfamilySUPERFAMILY49265Fibronectin type IIIcoord: 21..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:1170924..1171763 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3225.t1Gchil3225.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004382_pilon 1170924..1171763 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3225.t1 ID=Gchil3225.t1|Name=Gchil3225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=280bp
MNNTGFIASTATALWRSSVAKISTEAVGERMVSLVWSGGPSSAFTVLYAP
VGASFRSRRVVAHPRVNLIGLRPGVPYEVQVTGNGFDASTTFTTNATAQS
PGPVDTEGGSPELPMTEVSRLEIRVGKIVQCEKHPDADSLYVEKIDVGEE
EPRTIVSGLVKYVPLEKMVGRTVIVLCNLKPRAMRGVTSHGMLLCVSNED
HTIVDPLSAPTDAQIGELITFEGHRAAPIDPGNRATKAFDRIADGLKTNE
KGVAMFEDVPFLTSAGACFSPEQLVGSIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002547tRNA-bd_dom
IPR003961FN3_dom
IPR012340NA-bd_OB-fold
IPR036116FN3_sf