Gchil3105.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3105.t1
Unique NameGchil3105.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length584
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:102120..104695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_007161m
Preferred nameCIPK23
PFAMsNAF,Pkinase
Max annot lvl35493|Streptophyta
KEGG koko:K07198
KEGG Pathwayko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,ko05418,map04068,map04140,map04150,map04151,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410,map05418
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006950,GO:0007154,GO:0007165,GO:0007584,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009536,GO:0009605,GO:0009628,GO:0009987,GO:0009991,GO:0010035,GO:0010107,GO:0010118,GO:0015672,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0030001,GO:0031667,GO:0034220,GO:0035556,GO:0036211,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0055085,GO:0065007,GO:0071704,GO:0071804,GO:0071805,GO:0071944,GO:0098655,GO:0098660,GO:0098662,GO:0140096,GO:1901564,GO:1901700
Evalue6.03e-70
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota,37R37@33090|Viridiplantae,3G903@35493|Streptophyta,4JIAH@91835|fabids
EC2.7.11.11
DescriptionCBL-interacting serine threonine-protein kinase
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3105Gchil3105Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 102120..104695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3105.t1Gchil3105.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 102120..104695 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3105.t1.start1Gchil3105.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 102120..102122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3105.t1.CDS1Gchil3105.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 102120..102275 +
Gchil3105.t1.CDS2Gchil3105.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 102354..103736 +
Gchil3105.t1.CDS3Gchil3105.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 104483..104695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3105.t1.exon1Gchil3105.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 102120..102275 +
Gchil3105.t1.exon2Gchil3105.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 102354..103736 +
Gchil3105.t1.exon3Gchil3105.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 104483..104695 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3105.t1.intron1Gchil3105.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 102276..102353 +
Gchil3105.t1.intron2Gchil3105.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 103737..104482 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3105.t1.stop1Gchil3105.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 104693..104695 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3105.t1 ID=Gchil3105.t1|Name=Gchil3105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=584bp
MIARVGDYAIHEELGEGAFGKVRHAVHDFTSNHYAIKIMDKSLIRHHHLT
VNTKLYVVLELVRGPELFELIANTSGGLPERSARRYFQQLIEGVLYCHQR
GVSHRDLKPENLLIDEQSGLLKITDFGLSSMKGADTASELLTTQCGTPHY
IAPEIISRTVPAYDGRKVDAWACGIILFALLAGYLPFDESDLVCLFDAIR
HGQFTFPAWMSSGARDLIWRLLCVDPDTRISLNEVITHPWFAVGFKPSDN
SFALHLSPPRTTLTSSSKPRKRKHKRSAHRSRARKRDTPDPLLPLLKLEL
PDLKLSDPSKAPSVAPSRVSATAAVTAQNEMTKSGRNMSFSTRYTLIRKG
IVTYGDISLSQIDENKQYPLGGVEQENVRVVESSTRTSLYSPLATLNPCE
TKNRSPVSIAPSEILSVEKTPEEAAQTVHVVNSLRKTISLTRSASRWYEH
SRNLASPTEEAFLQKSTLISLNRLRNQLKEFGDYMEKGKCQPKTFEKTFM
SVSKRREMLRLLDSKTSFRREIIKIWESFSRREGKLNSTASIYSFYWFER
FVEEHIHSGLYKRTTQDGLRQALLHQFPIIRGL*
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spliced messenger RNA

>Gchil3105.t1 ID=Gchil3105.t1|Name=Gchil3105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1752bp|location=Sequence derived from alignment at tig00004382_pilon:102120..104695+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGCTCGTGTCGGTGACTATGCTATTCACGAAGAGCTCGGCGAGGG
AGCCTTCGGTAAAGTGCGCCATGCTGTCCACGACTTCACGAGCAATCACT
ACGCTATCAAAATTATGGATAAATCGCTCATCCGTCATCATCACCTAACC
GTAAACACTAAGCTCTATGTTGTGCTAGAGCTCGTTCGTGGGCCTGAGCT
TTTTGAGCTCATCGCCAACACATCGGGAGGTCTACCGGAACGTTCGGCTC
GTCGGTACTTCCAGCAGCTTATCGAAGGCGTACTATACTGTCATCAACGC
GGTGTTTCGCATCGAGACCTCAAACCTGAAAATTTACTAATAGATGAACA
ATCTGGCTTACTTAAGATTACAGATTTCGGGTTAAGTTCGATGAAGGGTG
CAGACACAGCATCCGAACTTCTTACGACGCAATGCGGCACTCCACATTAC
ATTGCACCGGAGATCATTTCGCGAACTGTCCCTGCGTACGATGGTCGTAA
GGTTGATGCATGGGCCTGTGGCATCATTCTTTTCGCTTTGCTAGCCGGTT
ATTTACCCTTCGATGAATCCGATTTGGTCTGCCTCTTTGATGCGATTCGC
CATGGTCAGTTTACGTTTCCGGCATGGATGTCATCAGGAGCCAGAGATCT
TATTTGGCGTTTATTGTGTGTTGATCCCGATACCAGAATTTCTCTGAATG
AAGTCATAACACATCCGTGGTTTGCAGTGGGTTTCAAACCGTCAGATAAT
TCTTTTGCTTTACATTTATCCCCACCAAGAACAACACTCACATCATCATC
GAAGCCTCGAAAACGAAAACATAAGCGATCTGCACATCGAAGTAGAGCGC
GAAAGAGAGATACTCCAGACCCTTTACTTCCACTTCTCAAACTGGAGCTT
CCCGACTTGAAACTTTCAGACCCATCCAAGGCCCCTTCAGTTGCTCCTTC
AAGGGTTTCCGCAACCGCTGCGGTTACGGCGCAAAACGAGATGACGAAGT
CGGGTAGAAATATGTCTTTTTCTACTCGCTACACCTTAATTCGCAAAGGA
ATAGTAACATATGGAGATATCAGTTTATCACAAATAGATGAAAACAAACA
ATATCCCCTAGGCGGCGTAGAGCAGGAAAACGTGAGGGTTGTTGAAAGCT
CTACAAGAACTTCCCTTTACTCTCCACTAGCAACCCTGAACCCATGTGAG
ACAAAAAACAGATCACCTGTGTCAATCGCACCTTCCGAGATTCTATCCGT
AGAGAAAACACCAGAAGAGGCCGCTCAAACAGTGCACGTTGTAAATAGTC
TACGAAAAACGATCAGTTTGACTCGCAGCGCCAGTAGATGGTACGAACAT
AGCCGTAATCTTGCGAGCCCTACGGAAGAAGCTTTTCTACAAAAGTCCAC
TCTAATCTCGTTAAACCGTCTTCGTAATCAACTTAAAGAATTCGGGGACT
ATATGGAAAAAGGCAAATGTCAACCGAAAACTTTTGAAAAGACTTTTATG
TCTGTATCCAAGCGTCGCGAAATGTTGCGGCTTCTTGATAGTAAGACATC
ATTCAGGAGAGAGATCATCAAGATATGGGAATCATTCAGTCGCAGAGAAG
GAAAGCTCAACTCAACGGCAAGTATCTACAGCTTCTACTGGTTCGAACGT
TTCGTCGAAGAGCACATCCACTCAGGCTTGTACAAGAGAACAACTCAAGA
CGGTCTTAGACAGGCATTGTTACACCAGTTTCCGATCATCCGTGGGCTCT
GA
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protein sequence of Gchil3105.t1

>Gchil3105.t1 ID=Gchil3105.t1|Name=Gchil3105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=584bp
MIARVGDYAIHEELGEGAFGKVRHAVHDFTSNHYAIKIMDKSLIRHHHLT
VNTKLYVVLELVRGPELFELIANTSGGLPERSARRYFQQLIEGVLYCHQR
GVSHRDLKPENLLIDEQSGLLKITDFGLSSMKGADTASELLTTQCGTPHY
IAPEIISRTVPAYDGRKVDAWACGIILFALLAGYLPFDESDLVCLFDAIR
HGQFTFPAWMSSGARDLIWRLLCVDPDTRISLNEVITHPWFAVGFKPSDN
SFALHLSPPRTTLTSSSKPRKRKHKRSAHRSRARKRDTPDPLLPLLKLEL
PDLKLSDPSKAPSVAPSRVSATAAVTAQNEMTKSGRNMSFSTRYTLIRKG
IVTYGDISLSQIDENKQYPLGGVEQENVRVVESSTRTSLYSPLATLNPCE
TKNRSPVSIAPSEILSVEKTPEEAAQTVHVVNSLRKTISLTRSASRWYEH
SRNLASPTEEAFLQKSTLISLNRLRNQLKEFGDYMEKGKCQPKTFEKTFM
SVSKRREMLRLLDSKTSFRREIIKIWESFSRREGKLNSTASIYSFYWFER
FVEEHIHSGLYKRTTQDGLRQALLHQFPIIRGL*
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mRNA from alignment at tig00004382_pilon:102120..104695+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3105.t1 ID=Gchil3105.t1|Name=Gchil3105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2576bp|location=Sequence derived from alignment at tig00004382_pilon:102120..104695+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTGCTCGTGTCGGTGACTATGCTATTCACGAAGAGCTCGGCGAGGG
AGCCTTCGGTAAAGTGCGCCATGCTGTCCACGACTTCACGAGCAATCACT
ACGCTATCAAAATTATGGATAAATCGCTCATCCGTCATCATCACCTAACC
GTAAACGTACGTCGCGAAATTGCCATCATGAAAGCTTTTCAACATCCTCA
CATCGTCTCCCTGCACCACGTACTTTCCTCTAAGACTAAGCTCTATGTTG
TGCTAGAGCTCGTTCGTGGGCCTGAGCTTTTTGAGCTCATCGCCAACACA
TCGGGAGGTCTACCGGAACGTTCGGCTCGTCGGTACTTCCAGCAGCTTAT
CGAAGGCGTACTATACTGTCATCAACGCGGTGTTTCGCATCGAGACCTCA
AACCTGAAAATTTACTAATAGATGAACAATCTGGCTTACTTAAGATTACA
GATTTCGGGTTAAGTTCGATGAAGGGTGCAGACACAGCATCCGAACTTCT
TACGACGCAATGCGGCACTCCACATTACATTGCACCGGAGATCATTTCGC
GAACTGTCCCTGCGTACGATGGTCGTAAGGTTGATGCATGGGCCTGTGGC
ATCATTCTTTTCGCTTTGCTAGCCGGTTATTTACCCTTCGATGAATCCGA
TTTGGTCTGCCTCTTTGATGCGATTCGCCATGGTCAGTTTACGTTTCCGG
CATGGATGTCATCAGGAGCCAGAGATCTTATTTGGCGTTTATTGTGTGTT
GATCCCGATACCAGAATTTCTCTGAATGAAGTCATAACACATCCGTGGTT
TGCAGTGGGTTTCAAACCGTCAGATAATTCTTTTGCTTTACATTTATCCC
CACCAAGAACAACACTCACATCATCATCGAAGCCTCGAAAACGAAAACAT
AAGCGATCTGCACATCGAAGTAGAGCGCGAAAGAGAGATACTCCAGACCC
TTTACTTCCACTTCTCAAACTGGAGCTTCCCGACTTGAAACTTTCAGACC
CATCCAAGGCCCCTTCAGTTGCTCCTTCAAGGGTTTCCGCAACCGCTGCG
GTTACGGCGCAAAACGAGATGACGAAGTCGGGTAGAAATATGTCTTTTTC
TACTCGCTACACCTTAATTCGCAAAGGAATAGTAACATATGGAGATATCA
GTTTATCACAAATAGATGAAAACAAACAATATCCCCTAGGCGGCGTAGAG
CAGGAAAACGTGAGGGTTGTTGAAAGCTCTACAAGAACTTCCCTTTACTC
TCCACTAGCAACCCTGAACCCATGTGAGACAAAAAACAGATCACCTGTGT
CAATCGCACCTTCCGAGATTCTATCCGTAGAGAAAACACCAGAAGAGGCC
GCTCAAACAGTGCACGTTGTAAATAGTCTACGAAAAACGATCAGTTTGAC
TCGCAGCGCCAGTAGATGGTACGAACATAGCCGTAATCTTGCGAGCCCTA
CGGAAGAAGCTTTTCTACAAAAGTCCACTCTAATCTCGTTAAACCGTCTT
CGTAATCAACTTAAAGAATTCGGGGACTATATGGAAAAAGGCAAATGTCA
ACCGAAAACTTTTGAAAAGACTTTTATGTCTGTATCCAAGCGTCGCGAAA
TGTTGCGGCTTCTTGATGTTTGggagagcagaataattagggatgctggc
cctctttcgaagaatcaagcgggaagcactggactttcaggggatgaact
tcaagattttcaaacattgttgttgacttgggagactcaacttggtgggg
aagaaatcatagaagatgtcctcattcctggaagcgaattagttgaagat
gaagttcctacttcagatattcccgatcgtttcattcaAACGCGAAAGCG
TATGACTGAAACGGATCGTGATAAAAAACTACAGGACTCGAGAGCGAAAG
TTTGTTCTGGAACCCGGCGTAATATCTCTACCGCTGGAGGACAACGTCCA
TTCCCGAATTTACAAACTCATCACCCGTTTGCTCAATTTACGACCTCGTC
GAacgcgacaaacgcaattaacatcccgtcagaagcaatgtgtgatgatt
taaaccacctttggaatcacgttctagtggcgaacacttcgaagctcgac
gaaatgatggaaagagacagtgattctctctctgatttaccgaaagccat
aggtcggaatcggaacgcggattcattggaaaatgtaatgagcgtttctc
ctgttacggaatggcgctgttcgaatgaTTCGGACACGGATCCCACGGAC
AGCACAGCCAACACTTTTAAAGTAGAGCGCTGTATCAATCGCCATCAGAT
TCACGGGTTTTCTACGAACAGAGATACCCGCTACGCGAATAAGCATGAAA
TAGGTTCCTCTAGAGTAAGACATCATTCAGGAGAGAGATCATCAAGATAT
GGGAATCATTCAGTCGCAGAGAAGGAAAGCTCAACTCAACGGCAAGTATC
TACAGCTTCTACTGGTTCGAACGTTTCGTCGAAGAGCACATCCACTCAGG
CTTGTACAAGAGAACAACTCAAGACGGTCTTAGACAGGCATTGTTACACC
AGTTTCCGATCATCCGTGGGCTCTGA
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Coding sequence (CDS) from alignment at tig00004382_pilon:102120..104695+

>Gchil3105.t1 ID=Gchil3105.t1|Name=Gchil3105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1752bp|location=Sequence derived from alignment at tig00004382_pilon:102120..104695+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTGCTCGTGTCGGTGACTATGCTATTCACGAAGAGCTCGGCGAGGG
AGCCTTCGGTAAAGTGCGCCATGCTGTCCACGACTTCACGAGCAATCACT
ACGCTATCAAAATTATGGATAAATCGCTCATCCGTCATCATCACCTAACC
GTAAACACTAAGCTCTATGTTGTGCTAGAGCTCGTTCGTGGGCCTGAGCT
TTTTGAGCTCATCGCCAACACATCGGGAGGTCTACCGGAACGTTCGGCTC
GTCGGTACTTCCAGCAGCTTATCGAAGGCGTACTATACTGTCATCAACGC
GGTGTTTCGCATCGAGACCTCAAACCTGAAAATTTACTAATAGATGAACA
ATCTGGCTTACTTAAGATTACAGATTTCGGGTTAAGTTCGATGAAGGGTG
CAGACACAGCATCCGAACTTCTTACGACGCAATGCGGCACTCCACATTAC
ATTGCACCGGAGATCATTTCGCGAACTGTCCCTGCGTACGATGGTCGTAA
GGTTGATGCATGGGCCTGTGGCATCATTCTTTTCGCTTTGCTAGCCGGTT
ATTTACCCTTCGATGAATCCGATTTGGTCTGCCTCTTTGATGCGATTCGC
CATGGTCAGTTTACGTTTCCGGCATGGATGTCATCAGGAGCCAGAGATCT
TATTTGGCGTTTATTGTGTGTTGATCCCGATACCAGAATTTCTCTGAATG
AAGTCATAACACATCCGTGGTTTGCAGTGGGTTTCAAACCGTCAGATAAT
TCTTTTGCTTTACATTTATCCCCACCAAGAACAACACTCACATCATCATC
GAAGCCTCGAAAACGAAAACATAAGCGATCTGCACATCGAAGTAGAGCGC
GAAAGAGAGATACTCCAGACCCTTTACTTCCACTTCTCAAACTGGAGCTT
CCCGACTTGAAACTTTCAGACCCATCCAAGGCCCCTTCAGTTGCTCCTTC
AAGGGTTTCCGCAACCGCTGCGGTTACGGCGCAAAACGAGATGACGAAGT
CGGGTAGAAATATGTCTTTTTCTACTCGCTACACCTTAATTCGCAAAGGA
ATAGTAACATATGGAGATATCAGTTTATCACAAATAGATGAAAACAAACA
ATATCCCCTAGGCGGCGTAGAGCAGGAAAACGTGAGGGTTGTTGAAAGCT
CTACAAGAACTTCCCTTTACTCTCCACTAGCAACCCTGAACCCATGTGAG
ACAAAAAACAGATCACCTGTGTCAATCGCACCTTCCGAGATTCTATCCGT
AGAGAAAACACCAGAAGAGGCCGCTCAAACAGTGCACGTTGTAAATAGTC
TACGAAAAACGATCAGTTTGACTCGCAGCGCCAGTAGATGGTACGAACAT
AGCCGTAATCTTGCGAGCCCTACGGAAGAAGCTTTTCTACAAAAGTCCAC
TCTAATCTCGTTAAACCGTCTTCGTAATCAACTTAAAGAATTCGGGGACT
ATATGGAAAAAGGCAAATGTCAACCGAAAACTTTTGAAAAGACTTTTATG
TCTGTATCCAAGCGTCGCGAAATGTTGCGGCTTCTTGATAGTAAGACATC
ATTCAGGAGAGAGATCATCAAGATATGGGAATCATTCAGTCGCAGAGAAG
GAAAGCTCAACTCAACGGCAAGTATCTACAGCTTCTACTGGTTCGAACGT
TTCGTCGAAGAGCACATCCACTCAGGCTTGTACAAGAGAACAACTCAAGA
CGGTCTTAGACAGGCATTGTTACACCAGTTTCCGATCATCCGTGGGCTCT
GA
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