Gchil3176.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil3176.t1
Unique NameGchil3176.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length454
Homology
BLAST of Gchil3176.t1 vs. uniprot
Match: A0A2V3IL61_9FLOR (Charged multivesicular body protein 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL61_9FLOR)

HSP 1 Score: 668 bits (1724), Expect = 1.030e-238
Identity = 362/456 (79.39%), Postives = 408/456 (89.47%), Query Frame = 0
Query:    1 MVTADLWSVNILPSFKTRSAEEIDVLWSADLPSYRDENPGLWDAMIGFFEDAIVSSCSRPGKLVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIISADTLKPPSKDSTTRSGYTLSSLKQTLGSYIWGGSRSEAPSLDDPIVPVAALKAAAARLSSYSEGPMASTEIHTVKSLASAMTERNTRDAEAIISYLVSRNEAVPLFTEPSPEHPEPVLGVKFGKQKINPSDKGVLRTKAALEHMEQQSSHLEKAIYKEIEAATKAAKAGNKTEALARLRKKKVLEAKLIGARSAATKLSDVLLAVDEAESNKEAVLALETGMESLKLVNQNGVTANRVDTVASDFKELIEDQTDVRLALEQLAQESAADDAVLEEELEQLVSGEKP--LKQDVNKLPKKTLADEAEEELAQLLAQLPSPSSEAVPDPHKAPVASSSTA-GDAQQNQGSRIEANIPES 453
            MVT + WSV  L SFKTR+ EEIDVLWSADLP+YRDENP LWDA++GFFEDAIVSSCSRPGKLVVTPRELLKQLKHNGREPSSGLR++RELFQKGDI+SADTL+PPSKDS+ R+GYTLS+LKQTLGSYIWG  ++E+PSLDDPIVPVAALKAAAAR +S+SEGPMASTEIHTVK+LA+A+T RNTRDAEA+ISYLVS+NEAVPLFTEPSPEHPEPVLGVKFGK K+NPSD+GVLRTKAA EHMEQQS HLEKA+  E EAAT AAKAG K+EAL RLR+KKVLEAKL G RSAATKLSDVL+AVDEAESNKEAVLALETGM SLKLVN+NGVTA RVD VASDFK+L+E QTDVRLALEQLA++SAADDAVLEEELE+L++G KP  LK   +KLPKKTLADEAEEELA+LLA LPSPS+E VP P++ P A+SS+   +       R+EANIP+S
Sbjct:    1 MVTGNAWSVTTLASFKTRNEEEIDVLWSADLPTYRDENPALWDAIVGFFEDAIVSSCSRPGKLVVTPRELLKQLKHNGREPSSGLRVIRELFQKGDIVSADTLRPPSKDSSNRAGYTLSALKQTLGSYIWGAKKTESPSLDDPIVPVAALKAAAARFASFSEGPMASTEIHTVKTLAAAVTGRNTRDAEAVISYLVSKNEAVPLFTEPSPEHPEPVLGVKFGKHKVNPSDQGVLRTKAAFEHMEQQSMHLEKAVAAEKEAATIAAKAGQKSEALTRLRRKKVLEAKLTGTRSAATKLSDVLMAVDEAESNKEAVLALETGMASLKLVNENGVTAGRVDNVASDFKDLMEGQTDVRLALEQLAKDSAADDAVLEEELEELITG-KPSALKVTPSKLPKKTLADEAEEELAELLAALPSPSNEPVPSPYQVPAAASSSGIQEPSAVDNRRLEANIPDS 455          
BLAST of Gchil3176.t1 vs. uniprot
Match: A0A7S0BH54_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BH54_9RHOD)

HSP 1 Score: 110 bits (274), Expect = 9.950e-23
Identity = 96/376 (25.53%), Postives = 176/376 (46.81%), Query Frame = 0
Query:   18 RSAEEIDVLWSADLPSYRDENPGLWDAMIGFFEDAIVSSCSRPGKLVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIISADTLKPPSK------DSTTRSGYTLSSLKQTLGSYIWGGSRSEAPSLDDPIVPVAALKAAAARLSSYSEGPMASTEIHTVKSLASAMTERNTRDAEAIISYLVSRNEAVPLFTEPSPEHPEPVLGVKFGKQKINPSDKGVLRTKAALEHMEQQSSHLEKAIYKEIEAATKAAKAGN------KTEALARLRKKKVLEAKLIGARSAATKLSDVLLAVDEAESNKEAVLALETGMESLKLVNQNGVTANRVDTVASDFKELIEDQTDVRLALEQLAQESAADDAVLEEELEQLVS 381
            +  E++++LWSA+LP  ++ NP LW+ ++ +F + ++   + PG+LV T  ELL++L+ +GR P SG RI+ EL  KG++I +  L   ++       +  ++G  + +L +    Y+     +  PS    +     L+  AA +         +  +  ++ LA      + R+A A+ +Y  SR +       P          VK   + +  +D  VLR K  L  +  +   LE+ +   I +A       N      K+ A A +++ K+ E K+      + K+   L +VDEA S  +AV  LE   +S+K++    +  +R+D +  D +  +E    +  A  Q  Q    DD  +E++LE L +
Sbjct:   17 KDTEDLEMLWSAELPPKKETNPILWNELVNWFTETVLVVTAEPGRLVATKEELLRRLEWSGRLPKSGDRIISELIAKGELIQSPELVDYARVVYLPETAAAKAGSAMKTLWRWATRYM-----NTNPSTAGVMCAKRNLERRAADVEVQISVGSYTDSLKLLEELAEEECNGDVREAIALAAYQASRRKWQTAEIAPGK------YAVKSSSENLTSNDFEVLRMKTTLRALRVREQQLEEVLQSHIASAKDTFGNMNLPEKTRKSRASAFMQRSKMTEKKMDHLSVLSRKIETALSSVDEAHSTNDAVETLE---QSMKVLQDVQIDVDRLDDLLLDMEGHMETNAQINAAFSQRRQTDLDDDDAIEKQLESLAA 378          
BLAST of Gchil3176.t1 vs. uniprot
Match: A0A7S3A1U0_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A1U0_9RHOD)

HSP 1 Score: 105 bits (261), Expect = 1.130e-20
Identity = 99/378 (26.19%), Postives = 168/378 (44.44%), Query Frame = 0
Query:   18 RSAEEIDVLWSADLPSYRDENPGLWDAMIGFFEDAIVSSCSRPGKLVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIISADTLKPPSKDSTTRSGYTLSSLKQTLGSYI---WGGSRSEAPSLDDPIVPVAALKAAAARLSSYSEGPMASTEIHTVKSLASAMTER---NTRDAEAIISYLVSRNEAVPLFTEPSPEHPEPVLGVKFGKQKINPSDKGVLRTKAALEHMEQQSSHLEKAIYKEIEAATKAAKAGN--------KTEALARLRKKKVLEAKLIGARSAATKLSDVLLAVDEAESNKEAVLALETGMESLKLVNQNGVTANRVDTVASDFKELIEDQTDVRLALEQLAQESAADDAVLEEELEQLVS 381
            +  E++++LWSA+LP  +D NP LW+ ++ +F   ++   + PG+LV T  ELL +L+ +GR P SG RI+ EL  KGD+I     +PP      R  Y   +     GS +   W  +     +    +  + A      R +       A +   ++K L     E    + R+A A+ +Y  S+ +       P          VK   + +  +D  VL  K  L  +  Q   LE+ +   + +A  A   GN        K+ A A + + K+ E ++      + K+   L +VDEA S  +AV  LE   +S+K++    +  NR+D +  D +  +E    +  A  Q       DD  +E++LE L +
Sbjct:   17 KDPEDLEMLWSAELPPEKDTNPTLWNELLNWFASTVLVVTAEPGRLVATKEELLSRLEWSGRLPKSGDRIVSELVAKGDLI-----RPPELIDYARVVYLPETAASKAGSAMKTMWRWATRYLGTNSSTVGVLCAKSNLERRAADVEVQIGAGSYTDSLKLLEEVAEEECNGDIREAIALAAYQTSKGKWQTAEIAPGK------YAVKSSSELLTSNDVEVLSMKTTLRALRVQEQQLEEVLQSHLASAKTAY--GNMSLPENTRKSRASAFMHRSKITEKQIDHLIVLSRKIETALSSVDEAHSTNDAVETLE---QSMKVLQDVQIDVNRLDDLMLDMEGHMETNAKINAAFSQRRPTDVDDDDAIEKQLESLAA 378          
The following BLAST results are available for this feature:
BLAST of Gchil3176.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IL61_9FLOR1.030e-23879.39Charged multivesicular body protein 7 n=1 Tax=Grac... [more]
A0A7S0BH54_9RHOD9.950e-2325.53Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S3A1U0_9RHOD1.130e-2026.19Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.1060coord: 230..305
e-value: 2.6E-6
score: 29.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 432..453
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 404..453
NoneNo IPR availablePANTHERPTHR22761:SF5CHARGED MULTIVESICULAR BODY PROTEIN 6coord: 226..430
IPR005024Snf7 familyPFAMPF03357Snf7coord: 238..395
e-value: 3.7E-13
score: 49.5
IPR005024Snf7 familyPANTHERPTHR22761CHARGED MULTIVESICULAR BODY PROTEINcoord: 226..430

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:618076..619635 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3176.t1Gchil3176.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004382_pilon 618076..619635 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil3176.t1 ID=Gchil3176.t1|Name=Gchil3176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=454bp
MVTADLWSVNILPSFKTRSAEEIDVLWSADLPSYRDENPGLWDAMIGFFE
DAIVSSCSRPGKLVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIISA
DTLKPPSKDSTTRSGYTLSSLKQTLGSYIWGGSRSEAPSLDDPIVPVAAL
KAAAARLSSYSEGPMASTEIHTVKSLASAMTERNTRDAEAIISYLVSRNE
AVPLFTEPSPEHPEPVLGVKFGKQKINPSDKGVLRTKAALEHMEQQSSHL
EKAIYKEIEAATKAAKAGNKTEALARLRKKKVLEAKLIGARSAATKLSDV
LLAVDEAESNKEAVLALETGMESLKLVNQNGVTANRVDTVASDFKELIED
QTDVRLALEQLAQESAADDAVLEEELEQLVSGEKPLKQDVNKLPKKTLAD
EAEEELAQLLAQLPSPSSEAVPDPHKAPVASSSTAGDAQQNQGSRIEANI
PES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005024Snf7_fam