Gchil3176.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3176.t1
Unique NameGchil3176.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length454
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:618076..619635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0266400
Preferred nameCHMP7
PFAMsSnf7
Max annot lvl2759|Eukaryota
KEGG koko:K03251,ko:K15053
KEGG Pathwayko03013,ko04144,ko04217,map03013,map04144,map04217
KEGG ModuleM00412
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000815,GO:0000819,GO:0000920,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005768,GO:0005829,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0006998,GO:0007032,GO:0007034,GO:0007049,GO:0007059,GO:0007080,GO:0008104,GO:0008150,GO:0008152,GO:0008565,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0010256,GO:0010458,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0019058,GO:0019068,GO:0019538,GO:0019941,GO:0022402,GO:0022411,GO:0022607,GO:0030163,GO:0031090,GO:0031410,GO:0031468,GO:0031967,GO:0031975,GO:0031982,GO:0032984,GO:0032991,GO:0033036,GO:0033365,GO:0034502,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0042886,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0045184,GO:0045324,GO:0046755,GO:0046907,GO:0048285,GO:0050000,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051603,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0061024,GO:0070727,GO:0070925,GO:0071168,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0140014,GO:1901564,GO:1901565,GO:1901575,GO:1903047,GO:1904896,GO:1904903
Evalue6.29e-09
EggNOG OGsKOG2911@1|root,KOG2911@2759|Eukaryota
Descriptionvacuolar transport
COG categoryS
BRITEko00000,ko00001,ko00002,ko03012,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3176Gchil3176Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 618076..619635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3176.t1Gchil3176.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 618076..619635 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3176.t1.stop1Gchil3176.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 618076..618078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3176.t1.CDS1Gchil3176.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 618076..619236 -
Gchil3176.t1.CDS2Gchil3176.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 619348..619431 -
Gchil3176.t1.CDS3Gchil3176.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 619519..619635 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3176.t1.exon1Gchil3176.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 618076..619236 -
Gchil3176.t1.exon2Gchil3176.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 619348..619431 -
Gchil3176.t1.exon3Gchil3176.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 619519..619635 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3176.t1.intron1Gchil3176.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 619237..619347 -
Gchil3176.t1.intron2Gchil3176.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 619432..619518 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3176.t1.start1Gchil3176.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 619633..619635 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3176.t1 ID=Gchil3176.t1|Name=Gchil3176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=454bp
MVTADLWSVNILPSFKTRSAEEIDVLWSADLPSYRDENPGLWDAMIGFFE
DAIVSSCSRPGKLVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIISA
DTLKPPSKDSTTRSGYTLSSLKQTLGSYIWGGSRSEAPSLDDPIVPVAAL
KAAAARLSSYSEGPMASTEIHTVKSLASAMTERNTRDAEAIISYLVSRNE
AVPLFTEPSPEHPEPVLGVKFGKQKINPSDKGVLRTKAALEHMEQQSSHL
EKAIYKEIEAATKAAKAGNKTEALARLRKKKVLEAKLIGARSAATKLSDV
LLAVDEAESNKEAVLALETGMESLKLVNQNGVTANRVDTVASDFKELIED
QTDVRLALEQLAQESAADDAVLEEELEQLVSGEKPLKQDVNKLPKKTLAD
EAEEELAQLLAQLPSPSSEAVPDPHKAPVASSSTAGDAQQNQGSRIEANI
PES*
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spliced messenger RNA

>Gchil3176.t1 ID=Gchil3176.t1|Name=Gchil3176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1362bp|location=Sequence derived from alignment at tig00004382_pilon:618076..619635- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACGGCAGACTTGTGGAGCGTTAACATCTTGCCATCCTTTAAGAC
GAGGAGTGCGGAAGAAATCGATGTTCTCTGGTCTGCAGATTTGCCGTCAT
ACAGAGATGAAAATCCAGGATTGTGGGATGCAATGATCGGATTTTTTGAA
GACGCTATAGTTTCGTCATGCAGTCGTCCTGGAAAGCTTGTCGTCACTCC
AAGGGAGCTATTAAAGCAACTGAAACACAACGGGCGAGAACCCTCTTCGG
GTCTTCGCATCATGCGAGAACTTTTCCAGAAGGGCGATATTATAAGCGCA
GATACGCTGAAGCCTCCGTCCAAGGATTCGACAACTCGATCGGGTTACAC
TTTAAGTTCTCTCAAGCAAACATTAGGAAGTTATATTTGGGGCGGGAGTA
GGTCAGAAGCACCTAGTCTAGACGACCCCATTGTGCCGGTTGCAGCGCTC
AAGGCGGCAGCCGCCCGTCTGTCTTCTTACTCTGAAGGTCCAATGGCTTC
AACTGAAATTCACACTGTCAAGAGTCTGGCATCTGCAATGACAGAGCGAA
ATACTCGGGACGCAGAAGCTATAATATCGTATCTTGTGTCCAGAAACGAA
GCAGTACCCTTGTTTACGGAGCCGTCTCCTGAACATCCTGAGCCTGTTCT
TGGCGTTAAGTTTGGAAAACAAAAGATAAATCCTAGCGATAAAGGTGTAC
TTAGGACCAAGGCGGCCCTTGAACACATGGAACAACAATCGTCGCATTTA
GAAAAAGCAATCTACAAGGAAATAGAAGCGGCGACTAAAGCAGCAAAGGC
CGGAAACAAGACAGAAGCTCTTGCTCGGCTTCGAAAGAAGAAAGTATTGG
AGGCTAAGCTCATAGGAGCTCGTTCTGCTGCCACGAAACTTTCTGATGTA
TTATTGGCAGTTGATGAGGCCGAATCAAATAAGGAAGCTGTCCTAGCGCT
TGAAACTGGTATGGAGTCACTCAAGCTTGTCAATCAGAACGGCGTTACTG
CGAATAGAGTGGATACCGTTGCTTCAGATTTCAAGGAATTGATAGAAGAT
CAGACAGATGTTCGATTGGCCCTCGAACAGCTTGCTCAGGAGTCTGCAGC
GGACGATGCGGTTCTAGAAGAAGAGCTAGAACAGCTTGTCTCAGGAGAAA
AGCCACTCAAACAAGATGTGAACAAGCTACCCAAGAAGACTCTCGCCGAC
GAAGCCGAGGAAGAATTGGCTCAGCTCCTGGCACAGCTTCCCTCCCCCAG
TAGCGAAGCTGTTCCAGATCCTCATAAGGCACCAGTGGCTAGCAGTTCTA
CTGCGGGAGACGCACAACAGAATCAAGGTTCCCGCATTGAGGCGAATATC
CCAGAATCTTAA
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protein sequence of Gchil3176.t1

>Gchil3176.t1 ID=Gchil3176.t1|Name=Gchil3176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=454bp
MVTADLWSVNILPSFKTRSAEEIDVLWSADLPSYRDENPGLWDAMIGFFE
DAIVSSCSRPGKLVVTPRELLKQLKHNGREPSSGLRIMRELFQKGDIISA
DTLKPPSKDSTTRSGYTLSSLKQTLGSYIWGGSRSEAPSLDDPIVPVAAL
KAAAARLSSYSEGPMASTEIHTVKSLASAMTERNTRDAEAIISYLVSRNE
AVPLFTEPSPEHPEPVLGVKFGKQKINPSDKGVLRTKAALEHMEQQSSHL
EKAIYKEIEAATKAAKAGNKTEALARLRKKKVLEAKLIGARSAATKLSDV
LLAVDEAESNKEAVLALETGMESLKLVNQNGVTANRVDTVASDFKELIED
QTDVRLALEQLAQESAADDAVLEEELEQLVSGEKPLKQDVNKLPKKTLAD
EAEEELAQLLAQLPSPSSEAVPDPHKAPVASSSTAGDAQQNQGSRIEANI
PES*
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mRNA from alignment at tig00004382_pilon:618076..619635-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3176.t1 ID=Gchil3176.t1|Name=Gchil3176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1560bp|location=Sequence derived from alignment at tig00004382_pilon:618076..619635- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTACGGCAGACTTGTGGAGCGTTAACATCTTGCCATCCTTTAAGAC
GAGGAGTGCGGAAGAAATCGATGTTCTCTGGTCTGCAGATTTGCCGTCAT
ACAGAGATGAAAATCCAGTACGTTTAAAACTCATATTCGCTTTAACAAGC
TTCACTGCTTTCTCGTGATGGTTAACTAACGGAAAGGATGATCGGATGTT
ACAGGGATTGTGGGATGCAATGATCGGATTTTTTGAAGACGCTATAGTTT
CGTCATGCAGTCGTCCTGGAAAGCTTGTCGTCACTCCAGTACGTAAGCCA
TTGATCATGCCTGATCACAAAGGTTACTTTGAATCGATATCGAACTAACT
GTCAGTTGTACTCTGCACTGCAATCTATCACTTGTTTTTTTGTTAACAGA
GGGAGCTATTAAAGCAACTGAAACACAACGGGCGAGAACCCTCTTCGGGT
CTTCGCATCATGCGAGAACTTTTCCAGAAGGGCGATATTATAAGCGCAGA
TACGCTGAAGCCTCCGTCCAAGGATTCGACAACTCGATCGGGTTACACTT
TAAGTTCTCTCAAGCAAACATTAGGAAGTTATATTTGGGGCGGGAGTAGG
TCAGAAGCACCTAGTCTAGACGACCCCATTGTGCCGGTTGCAGCGCTCAA
GGCGGCAGCCGCCCGTCTGTCTTCTTACTCTGAAGGTCCAATGGCTTCAA
CTGAAATTCACACTGTCAAGAGTCTGGCATCTGCAATGACAGAGCGAAAT
ACTCGGGACGCAGAAGCTATAATATCGTATCTTGTGTCCAGAAACGAAGC
AGTACCCTTGTTTACGGAGCCGTCTCCTGAACATCCTGAGCCTGTTCTTG
GCGTTAAGTTTGGAAAACAAAAGATAAATCCTAGCGATAAAGGTGTACTT
AGGACCAAGGCGGCCCTTGAACACATGGAACAACAATCGTCGCATTTAGA
AAAAGCAATCTACAAGGAAATAGAAGCGGCGACTAAAGCAGCAAAGGCCG
GAAACAAGACAGAAGCTCTTGCTCGGCTTCGAAAGAAGAAAGTATTGGAG
GCTAAGCTCATAGGAGCTCGTTCTGCTGCCACGAAACTTTCTGATGTATT
ATTGGCAGTTGATGAGGCCGAATCAAATAAGGAAGCTGTCCTAGCGCTTG
AAACTGGTATGGAGTCACTCAAGCTTGTCAATCAGAACGGCGTTACTGCG
AATAGAGTGGATACCGTTGCTTCAGATTTCAAGGAATTGATAGAAGATCA
GACAGATGTTCGATTGGCCCTCGAACAGCTTGCTCAGGAGTCTGCAGCGG
ACGATGCGGTTCTAGAAGAAGAGCTAGAACAGCTTGTCTCAGGAGAAAAG
CCACTCAAACAAGATGTGAACAAGCTACCCAAGAAGACTCTCGCCGACGA
AGCCGAGGAAGAATTGGCTCAGCTCCTGGCACAGCTTCCCTCCCCCAGTA
GCGAAGCTGTTCCAGATCCTCATAAGGCACCAGTGGCTAGCAGTTCTACT
GCGGGAGACGCACAACAGAATCAAGGTTCCCGCATTGAGGCGAATATCCC
AGAATCTTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:618076..619635-

>Gchil3176.t1 ID=Gchil3176.t1|Name=Gchil3176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1362bp|location=Sequence derived from alignment at tig00004382_pilon:618076..619635- (Gracilaria chilensis NLEC103_M9 male)
ATGGTTACGGCAGACTTGTGGAGCGTTAACATCTTGCCATCCTTTAAGAC
GAGGAGTGCGGAAGAAATCGATGTTCTCTGGTCTGCAGATTTGCCGTCAT
ACAGAGATGAAAATCCAGGATTGTGGGATGCAATGATCGGATTTTTTGAA
GACGCTATAGTTTCGTCATGCAGTCGTCCTGGAAAGCTTGTCGTCACTCC
AAGGGAGCTATTAAAGCAACTGAAACACAACGGGCGAGAACCCTCTTCGG
GTCTTCGCATCATGCGAGAACTTTTCCAGAAGGGCGATATTATAAGCGCA
GATACGCTGAAGCCTCCGTCCAAGGATTCGACAACTCGATCGGGTTACAC
TTTAAGTTCTCTCAAGCAAACATTAGGAAGTTATATTTGGGGCGGGAGTA
GGTCAGAAGCACCTAGTCTAGACGACCCCATTGTGCCGGTTGCAGCGCTC
AAGGCGGCAGCCGCCCGTCTGTCTTCTTACTCTGAAGGTCCAATGGCTTC
AACTGAAATTCACACTGTCAAGAGTCTGGCATCTGCAATGACAGAGCGAA
ATACTCGGGACGCAGAAGCTATAATATCGTATCTTGTGTCCAGAAACGAA
GCAGTACCCTTGTTTACGGAGCCGTCTCCTGAACATCCTGAGCCTGTTCT
TGGCGTTAAGTTTGGAAAACAAAAGATAAATCCTAGCGATAAAGGTGTAC
TTAGGACCAAGGCGGCCCTTGAACACATGGAACAACAATCGTCGCATTTA
GAAAAAGCAATCTACAAGGAAATAGAAGCGGCGACTAAAGCAGCAAAGGC
CGGAAACAAGACAGAAGCTCTTGCTCGGCTTCGAAAGAAGAAAGTATTGG
AGGCTAAGCTCATAGGAGCTCGTTCTGCTGCCACGAAACTTTCTGATGTA
TTATTGGCAGTTGATGAGGCCGAATCAAATAAGGAAGCTGTCCTAGCGCT
TGAAACTGGTATGGAGTCACTCAAGCTTGTCAATCAGAACGGCGTTACTG
CGAATAGAGTGGATACCGTTGCTTCAGATTTCAAGGAATTGATAGAAGAT
CAGACAGATGTTCGATTGGCCCTCGAACAGCTTGCTCAGGAGTCTGCAGC
GGACGATGCGGTTCTAGAAGAAGAGCTAGAACAGCTTGTCTCAGGAGAAA
AGCCACTCAAACAAGATGTGAACAAGCTACCCAAGAAGACTCTCGCCGAC
GAAGCCGAGGAAGAATTGGCTCAGCTCCTGGCACAGCTTCCCTCCCCCAG
TAGCGAAGCTGTTCCAGATCCTCATAAGGCACCAGTGGCTAGCAGTTCTA
CTGCGGGAGACGCACAACAGAATCAAGGTTCCCGCATTGAGGCGAATATC
CCAGAATCTTAA
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