Gchil3766.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3766.t1
Unique NameGchil3766.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length175
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:212200..212902 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3766Gchil3766Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 212200..212902 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3766.t1Gchil3766.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 212200..212902 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3766.t1.start1Gchil3766.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 212200..212202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3766.t1.CDS1Gchil3766.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 212200..212426 +
Gchil3766.t1.CDS2Gchil3766.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 212527..212618 +
Gchil3766.t1.CDS3Gchil3766.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 212697..212902 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3766.t1.exon1Gchil3766.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 212200..212426 +
Gchil3766.t1.exon2Gchil3766.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 212527..212618 +
Gchil3766.t1.exon3Gchil3766.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 212697..212902 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3766.t1.intron1Gchil3766.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 212427..212526 +
Gchil3766.t1.intron2Gchil3766.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 212619..212696 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3766.t1.stop1Gchil3766.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 212900..212902 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3766.t1 ID=Gchil3766.t1|Name=Gchil3766.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=175bp
MSDLNDFFAKKDRKKKKAAAKSAQAAAAQAVKHPEIPSENPPPPPQKQPD
DGWIEIEDVRGSQVNTGGRTIVQMRRDGEEKESSGDGNATTEKFSGWAKT
DAAPADEVLDTAAQAPSSAFPTLADAAKVKTIAPAQANTQRPSITARRPR
FTLANREKLLKALTADRESVKPTK*
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spliced messenger RNA

>Gchil3766.t1 ID=Gchil3766.t1|Name=Gchil3766.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=525bp|location=Sequence derived from alignment at tig00000010_pilon:212200..212902+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGACCTCAACGATTTCTTCGCCAAAAAGGACCGCAAGAAGAAGAA
GGCCGCCGCCAAATCTGCGCAAGCCGCCGCTGCCCAAGCCGTTAAACACC
CCGAAATTCCTTCTGAGAATCCGCCGCCCCCGCCGCAAAAGCAGCCCGAC
GACGGTTGGATTGAAATCGAAGACGTGCGCGGGTCCCAAGTCAATACCGG
CGGCCGAACCATCGTGCAGATGAGGCGAGATGGTGAGGAAAAGGAATCTA
GTGGCGATGGCAACGCCACCACGGAGAAGTTCAGTGGATGGGCTAAAACA
GATGCCGCCCCCGCGGACGAAGTCCTGGATACAGCTGCACAAGCTCCGAG
TAGCGCGTTTCCTACTCTGGCCGACGCTGCGAAAGTGAAAACCATTGCAC
CCGCGCAGGCAAACACGCAACGGCCGTCGATCACAGCCCGCCGTCCACGA
TTCACCCTAGCAAATAGAGAGAAGTTGCTCAAAGCTCTAACAGCCGATCG
AGAATCAGTCAAACCAACAAAATAA
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protein sequence of Gchil3766.t1

>Gchil3766.t1 ID=Gchil3766.t1|Name=Gchil3766.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=175bp
MSDLNDFFAKKDRKKKKAAAKSAQAAAAQAVKHPEIPSENPPPPPQKQPD
DGWIEIEDVRGSQVNTGGRTIVQMRRDGEEKESSGDGNATTEKFSGWAKT
DAAPADEVLDTAAQAPSSAFPTLADAAKVKTIAPAQANTQRPSITARRPR
FTLANREKLLKALTADRESVKPTK*
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mRNA from alignment at tig00000010_pilon:212200..212902+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3766.t1 ID=Gchil3766.t1|Name=Gchil3766.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=703bp|location=Sequence derived from alignment at tig00000010_pilon:212200..212902+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGACCTCAACGATTTCTTCGCCAAAAAGGACCGCAAGAAGAAGAA
GGCCGCCGCCAAATCTGCGCAAGCCGCCGCTGCCCAAGCCGTTAAACACC
CCGAAATTCCTTCTGAGAATCCGCCGCCCCCGCCGCAAAAGCAGCCCGAC
GACGGTTGGATTGAAATCGAAGACGTGCGCGGGTCCCAAGTCAATACCGG
CGGCCGAACCATCGTGCAGATGAGGCGGTACGATACATTATTCTTTCGTA
TTCCTTTCTTTTGCCACATCCTTATATTACTCACATATCATTTGTTTTCC
GCCCCCTGTTTTTGGCGCGTTTTGCAGAGATGGTGAGGAAAAGGAATCTA
GTGGCGATGGCAACGCCACCACGGAGAAGTTCAGTGGATGGGCTAAAACA
GATGCCGCCCCCGCGGACGGTATGTTGACCATTTCCGTATCTCCCTAATC
ATCTACGTATCTAACTAGTATCTTACTGCTACAATACCTCATTATAGAAG
TCCTGGATACAGCTGCACAAGCTCCGAGTAGCGCGTTTCCTACTCTGGCC
GACGCTGCGAAAGTGAAAACCATTGCACCCGCGCAGGCAAACACGCAACG
GCCGTCGATCACAGCCCGCCGTCCACGATTCACCCTAGCAAATAGAGAGA
AGTTGCTCAAAGCTCTAACAGCCGATCGAGAATCAGTCAAACCAACAAAA
TAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:212200..212902+

>Gchil3766.t1 ID=Gchil3766.t1|Name=Gchil3766.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=525bp|location=Sequence derived from alignment at tig00000010_pilon:212200..212902+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGTGACCTCAACGATTTCTTCGCCAAAAAGGACCGCAAGAAGAAGAA
GGCCGCCGCCAAATCTGCGCAAGCCGCCGCTGCCCAAGCCGTTAAACACC
CCGAAATTCCTTCTGAGAATCCGCCGCCCCCGCCGCAAAAGCAGCCCGAC
GACGGTTGGATTGAAATCGAAGACGTGCGCGGGTCCCAAGTCAATACCGG
CGGCCGAACCATCGTGCAGATGAGGCGAGATGGTGAGGAAAAGGAATCTA
GTGGCGATGGCAACGCCACCACGGAGAAGTTCAGTGGATGGGCTAAAACA
GATGCCGCCCCCGCGGACGAAGTCCTGGATACAGCTGCACAAGCTCCGAG
TAGCGCGTTTCCTACTCTGGCCGACGCTGCGAAAGTGAAAACCATTGCAC
CCGCGCAGGCAAACACGCAACGGCCGTCGATCACAGCCCGCCGTCCACGA
TTCACCCTAGCAAATAGAGAGAAGTTGCTCAAAGCTCTAACAGCCGATCG
AGAATCAGTCAAACCAACAAAATAA
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