Gchil3124.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3124.t1
Unique NameGchil3124.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length327
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004382_piloncontigtig00004382_pilon:256013..257123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_04553T0
Max annot lvl4751|Fungi
Evalue5.8e-15
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota,3ARBF@33154|Opisthokonta,3PFVF@4751|Fungi
DescriptionAllomyces macrogynus ATCC 38327
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3124Gchil3124Gracilaria chilensis NLEC103_M9 malegenetig00004382_pilon 256013..257123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3124.t1Gchil3124.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004382_pilon 256013..257123 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3124.t1.stop1Gchil3124.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004382_pilon 256013..256015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3124.t1.CDS1Gchil3124.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 256013..256175 -
Gchil3124.t1.CDS2Gchil3124.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 256234..256955 -
Gchil3124.t1.CDS3Gchil3124.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004382_pilon 257028..257123 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3124.t1.exon1Gchil3124.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 256013..256175 -
Gchil3124.t1.exon2Gchil3124.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 256234..256955 -
Gchil3124.t1.exon3Gchil3124.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004382_pilon 257028..257123 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3124.t1.intron1Gchil3124.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 256176..256233 -
Gchil3124.t1.intron2Gchil3124.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004382_pilon 256956..257027 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3124.t1.start1Gchil3124.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004382_pilon 257121..257123 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3124.t1 ID=Gchil3124.t1|Name=Gchil3124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=327bp
MAAFPFWMVIYLIVSVVRSHSIMTEPQSISPRDCRVGGEAKSGIDECYGP
CDLRAIQGGYANFNSPSNPSATYYRGQRITVKYSRNNHGPGGFVRLTLVP
LGSMMDKAVHERNAFHYSCWGANPQAAAPDELQSDRFGYSYVGNDGEEHP
FARGYYVVNTTIPKVIPDGDYVFGWVWFGGIGSVPIRGNTPQRPEPNPLG
YYADQWSCAYVRVRGGYPLEQYSHPVFVNDISQFNQQGCLAANDSPGVCV
TEPCYKPGWFQKPRAFKGKSYPKHPQREEWLKITTGIRILLVDALNWKKA
VILESHKRRAQDVFPMPKQFLNHSRV*
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spliced messenger RNA

>Gchil3124.t1 ID=Gchil3124.t1|Name=Gchil3124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=981bp|location=Sequence derived from alignment at tig00004382_pilon:256013..257123- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCATTTCCGTTTTGGATGGTAATATACCTTATCGTCTCTGTTGT
TCGATCTCATTCCATCATGACCGAGCCACAGAGCATATCGCCAAGAGACT
GTCGAGTTGGAGGAGAGGCTAAGTCCGGTATCGATGAATGCTATGGACCG
TGTGACCTCCGCGCCATTCAAGGCGGATATGCAAATTTCAATTCACCTTC
GAACCCTTCTGCTACATACTACCGTGGACAGCGTATAACTGTGAAATATA
GTCGAAATAATCATGGTCCTGGTGGATTCGTACGCTTAACCCTCGTTCCT
CTTGGAAGCATGATGGATAAGGCGGTGCACGAACGAAATGCGTTTCATTA
CAGCTGTTGGGGAGCAAACCCGCAAGCAGCAGCCCCTGATGAACTCCAGT
CGGATCGTTTTGGTTATTCTTACGTCGGAAATGATGGAGAAGAACACCCT
TTTGCACGTGGGTACTATGTCGTGAACACAACGATTCCAAAGGTCATTCC
GGACGGAGATTACGTGTTCGGTTGGGTATGGTTCGGGGGGATTGGCAGCG
TACCGATTCGCGGCAACACGCCTCAACGCCCTGAACCCAATCCCCTTGGC
TATTACGCCGATCAATGGTCTTGTGCATATGTCAGAGTCCGAGGAGGGTA
TCCGCTGGAACAGTATTCCCATCCAGTATTTGTCAACGACATCTCGCAAT
TCAATCAGCAGGGATGTCTCGCAGCGAATGATTCTCCCGGAGTATGCGTC
ACAGAACCGTGCTACAAACCAGGCTGGTTTCAGAAACCTCGCGCGTTCAA
AGGAAAATCATACCCGAAACATCCGCAACGGGAGGAGTGGTTGAAAATTA
CGACTGGAATTCGTATTCTGCTTGTCGATGCATTGAATTGGAAGAAAGCT
GTGATCCTGGAATCGCACAAACGGCGGGCGCAGGATGTCTTCCCTATGCC
AAAGCAATTTCTCAACCACAGTCGTGTGTAA
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protein sequence of Gchil3124.t1

>Gchil3124.t1 ID=Gchil3124.t1|Name=Gchil3124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=327bp
MAAFPFWMVIYLIVSVVRSHSIMTEPQSISPRDCRVGGEAKSGIDECYGP
CDLRAIQGGYANFNSPSNPSATYYRGQRITVKYSRNNHGPGGFVRLTLVP
LGSMMDKAVHERNAFHYSCWGANPQAAAPDELQSDRFGYSYVGNDGEEHP
FARGYYVVNTTIPKVIPDGDYVFGWVWFGGIGSVPIRGNTPQRPEPNPLG
YYADQWSCAYVRVRGGYPLEQYSHPVFVNDISQFNQQGCLAANDSPGVCV
TEPCYKPGWFQKPRAFKGKSYPKHPQREEWLKITTGIRILLVDALNWKKA
VILESHKRRAQDVFPMPKQFLNHSRV*
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mRNA from alignment at tig00004382_pilon:256013..257123-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3124.t1 ID=Gchil3124.t1|Name=Gchil3124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1111bp|location=Sequence derived from alignment at tig00004382_pilon:256013..257123- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGCATTTCCGTTTTGGATGGTAATATACCTTATCGTCTCTGTTGT
TCGATCTCATTCCATCATGACCGAGCCACAGAGCATATCGCCAAGAGTAA
GGCACTTAAACTTCCGACATACATACTCATGACAACTAACACGCTTCGCT
TCCTGGATACCGTCATAGGACTGTCGAGTTGGAGGAGAGGCTAAGTCCGG
TATCGATGAATGCTATGGACCGTGTGACCTCCGCGCCATTCAAGGCGGAT
ATGCAAATTTCAATTCACCTTCGAACCCTTCTGCTACATACTACCGTGGA
CAGCGTATAACTGTGAAATATAGTCGAAATAATCATGGTCCTGGTGGATT
CGTACGCTTAACCCTCGTTCCTCTTGGAAGCATGATGGATAAGGCGGTGC
ACGAACGAAATGCGTTTCATTACAGCTGTTGGGGAGCAAACCCGCAAGCA
GCAGCCCCTGATGAACTCCAGTCGGATCGTTTTGGTTATTCTTACGTCGG
AAATGATGGAGAAGAACACCCTTTTGCACGTGGGTACTATGTCGTGAACA
CAACGATTCCAAAGGTCATTCCGGACGGAGATTACGTGTTCGGTTGGGTA
TGGTTCGGGGGGATTGGCAGCGTACCGATTCGCGGCAACACGCCTCAACG
CCCTGAACCCAATCCCCTTGGCTATTACGCCGATCAATGGTCTTGTGCAT
ATGTCAGAGTCCGAGGAGGGTATCCGCTGGAACAGTATTCCCATCCAGTA
TTTGTCAACGACATCTCGCAATTCAATCAGCAGGGATGTCTCGCAGCGAA
TGATTCTCCCGGAGTATGCGTCACAGAACCGTGCTACAAACCAGGCTGGT
TTCAGAAACCTCGCGCGTTCAAAGGAAAATCATACCCGAAGTACTTGTCG
CCTGCCCTGTTTGCTAGTGTGTCTCCTTCACCATCTCCGGTGCCCAAGAC
ATCCGCAACGGGAGGAGTGGTTGAAAATTACGACTGGAATTCGTATTCTG
CTTGTCGATGCATTGAATTGGAAGAAAGCTGTGATCCTGGAATCGCACAA
ACGGCGGGCGCAGGATGTCTTCCCTATGCCAAAGCAATTTCTCAACCACA
GTCGTGTGTAA
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Coding sequence (CDS) from alignment at tig00004382_pilon:256013..257123-

>Gchil3124.t1 ID=Gchil3124.t1|Name=Gchil3124.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=981bp|location=Sequence derived from alignment at tig00004382_pilon:256013..257123- (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGCATTTCCGTTTTGGATGGTAATATACCTTATCGTCTCTGTTGT
TCGATCTCATTCCATCATGACCGAGCCACAGAGCATATCGCCAAGAGACT
GTCGAGTTGGAGGAGAGGCTAAGTCCGGTATCGATGAATGCTATGGACCG
TGTGACCTCCGCGCCATTCAAGGCGGATATGCAAATTTCAATTCACCTTC
GAACCCTTCTGCTACATACTACCGTGGACAGCGTATAACTGTGAAATATA
GTCGAAATAATCATGGTCCTGGTGGATTCGTACGCTTAACCCTCGTTCCT
CTTGGAAGCATGATGGATAAGGCGGTGCACGAACGAAATGCGTTTCATTA
CAGCTGTTGGGGAGCAAACCCGCAAGCAGCAGCCCCTGATGAACTCCAGT
CGGATCGTTTTGGTTATTCTTACGTCGGAAATGATGGAGAAGAACACCCT
TTTGCACGTGGGTACTATGTCGTGAACACAACGATTCCAAAGGTCATTCC
GGACGGAGATTACGTGTTCGGTTGGGTATGGTTCGGGGGGATTGGCAGCG
TACCGATTCGCGGCAACACGCCTCAACGCCCTGAACCCAATCCCCTTGGC
TATTACGCCGATCAATGGTCTTGTGCATATGTCAGAGTCCGAGGAGGGTA
TCCGCTGGAACAGTATTCCCATCCAGTATTTGTCAACGACATCTCGCAAT
TCAATCAGCAGGGATGTCTCGCAGCGAATGATTCTCCCGGAGTATGCGTC
ACAGAACCGTGCTACAAACCAGGCTGGTTTCAGAAACCTCGCGCGTTCAA
AGGAAAATCATACCCGAAACATCCGCAACGGGAGGAGTGGTTGAAAATTA
CGACTGGAATTCGTATTCTGCTTGTCGATGCATTGAATTGGAAGAAAGCT
GTGATCCTGGAATCGCACAAACGGCGGGCGCAGGATGTCTTCCCTATGCC
AAAGCAATTTCTCAACCACAGTCGTGTGTAA
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