Gchil3135.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3135.t1
Unique Name	Gchil3135.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	428

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:393639..394922 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704310.1
PFAMs	Asp
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K01379,ko:K04521,ko:K06002,ko:K07747
KEGG Pathway	ko04071,ko04140,ko04142,ko04210,ko04915,ko04974,ko05010,ko05152,map04071,map04140,map04142,map04210,map04915,map04974,map05010,map05152
Evalue	2.3e-39
EggNOG OGs	KOG1339@1\|root,KOG1339@2759\|Eukaryota
EC	3.4.23.1,3.4.23.45,3.4.23.46,3.4.23.5
Description	aspartic-type endopeptidase activity
COG category	M
BRITE	ko00000,ko00001,ko01000,ko01002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3135	Gchil3135	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 393639..394922 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3135.t1.start1	Gchil3135.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 393639..393641 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3135.t1.CDS1	Gchil3135.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 393639..394922 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3135.t1.exon1	Gchil3135.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 393639..394922 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3135.t1.stop1	Gchil3135.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 394920..394922 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3135.t1	Gchil3135.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 393639..394922 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:393639..394922+
coding sequence from alignment at tig00004382_pilon:393639..394922+

mRNA sequence

>Gchil3135.t1 ID=Gchil3135.t1|Name=Gchil3135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=428bp
MFYGDGSSGNGTLYRDVLRIGSLQASLLLGAMHEESRNFELPYTDGVLGM
AFQQGACHPACIPPAMDAIINQTGIANVFTICVSRFGGTLVLGAADKSLS
ISDYRYIPIQDAPDPKRYVIPAKPQWKIGNRTISVPSVTAAVWSTATTQI
AFSKTTFLNILDHLMEHYCHIPDLCSTSSWFRPQSCSFIPEETIAAMPSI
TIPLTDEISITLNPDDYLIKYRIVDGRRHRCVAMIATDSLLEKGYGLLLG
AAVLRRYAVVFDRGAYRVGVAEANLTNCGPGTGSEDGLPGGREERDNGIV
LTADSVPASATDSSAGSEEEKQLEEAEVCRAQKSCSSCANQSTCSFGYQT
GRCVPIHEATKIPYPFCVGAFCACFAVGGSGWYFGIVIGGLLGVTVVVVL
VLVYRKRQQRNRYQLLEQYEEQDLETF*

spliced messenger RNA

>Gchil3135.t1 ID=Gchil3135.t1|Name=Gchil3135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00004382_pilon:393639..394922+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTATGGTGACGGTTCTAGCGGTAATGGGACTTTGTACAGAGACGT
ACTCCGCATTGGAAGTCTCCAGGCGTCTCTACTTTTAGGTGCCATGCACG
AAGAGTCCCGTAACTTTGAGCTTCCTTACACAGATGGAGTCCTTGGTATG
GCCTTCCAACAGGGTGCGTGCCATCCGGCTTGCATTCCTCCGGCCATGGA
CGCAATTATCAACCAAACTGGGATTGCGAATGTTTTCACCATCTGTGTTT
CTCGCTTTGGAGGTACCCTGGTCCTCGGCGCAGCGGATAAGTCGTTGTCC
ATTTCGGATTACAGGTATATTCCTATACAAGATGCTCCCGACCCGAAACG
CTATGTAATTCCTGCTAAACCACAATGGAAAATCGGAAACAGAACGATAA
GTGTTCCGTCTGTAACAGCGGCCGTGTGGTCAACAGCTACCACCCAGATC
GCATTCTCCAAGACAACGTTCCTTAATATTTTGGATCATCTTATGGAGCA
TTACTGTCATATTCCGGACCTCTGCAGCACAAGCAGTTGGTTTCGTCCAC
AATCATGTTCCTTTATTCCGGAGGAGACCATTGCAGCGATGCCAAGCATA
ACCATTCCTCTCACAGATGAAATTTCAATTACACTAAACCCGGATGACTA
CCTTATCAAGTACCGAATAGTTGATGGTAGACGCCACCGCTGCGTCGCAA
TGATAGCAACTGACAGTCTTCTGGAGAAAGGATATGGACTATTGCTAGGC
GCAGCGGTTTTAAGAAGATACGCTGTGGTATTCGACCGCGGTGCTTATAG
AGTGGGTGTTGCCGAAGCCAATTTGACCAATTGCGGTCCAGGGACTGGGT
CTGAGGATGGACTGCCAGGAGGACGAGAAGAGCGAGACAACGGTATTGTC
CTCACTGCTGACTCTGTTCCAGCATCTGCTACGGATTCCAGCGCAGGCAG
CGAGGAGGAAAAGCAGTTGGAAGAAGCCGAAGTATGTCGTGCTCAGAAGT
CCTGTTCAAGTTGCGCCAACCAATCTACATGTAGCTTTGGCTACCAGACA
GGCCGTTGCGTCCCAATTCACGAAGCAACCAAGATTCCGTATCCGTTTTG
CGTAGGGGCGTTTTGCGCCTGTTTCGCTGTCGGTGGTTCTGGATGGTACT
TCGGAATAGTAATAGGAGGTTTGCTAGGGGTTACGGTCGTTGTCGTTCTG
GTATTAGTGTATCGGAAGAGACAACAACGTAATCGGTATCAATTGCTTGA
ACAATACGAAGAGCAAGATCTTGAAACGTTTTAG

protein sequence of Gchil3135.t1

>Gchil3135.t1 ID=Gchil3135.t1|Name=Gchil3135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=428bp
MFYGDGSSGNGTLYRDVLRIGSLQASLLLGAMHEESRNFELPYTDGVLGM
AFQQGACHPACIPPAMDAIINQTGIANVFTICVSRFGGTLVLGAADKSLS
ISDYRYIPIQDAPDPKRYVIPAKPQWKIGNRTISVPSVTAAVWSTATTQI
AFSKTTFLNILDHLMEHYCHIPDLCSTSSWFRPQSCSFIPEETIAAMPSI
TIPLTDEISITLNPDDYLIKYRIVDGRRHRCVAMIATDSLLEKGYGLLLG
AAVLRRYAVVFDRGAYRVGVAEANLTNCGPGTGSEDGLPGGREERDNGIV
LTADSVPASATDSSAGSEEEKQLEEAEVCRAQKSCSSCANQSTCSFGYQT
GRCVPIHEATKIPYPFCVGAFCACFAVGGSGWYFGIVIGGLLGVTVVVVL
VLVYRKRQQRNRYQLLEQYEEQDLETF*

mRNA from alignment at tig00004382_pilon:393639..394922+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3135.t1 ID=Gchil3135.t1|Name=Gchil3135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00004382_pilon:393639..394922+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTATGGTGACGGTTCTAGCGGTAATGGGACTTTGTACAGAGACGT
ACTCCGCATTGGAAGTCTCCAGGCGTCTCTACTTTTAGGTGCCATGCACG
AAGAGTCCCGTAACTTTGAGCTTCCTTACACAGATGGAGTCCTTGGTATG
GCCTTCCAACAGGGTGCGTGCCATCCGGCTTGCATTCCTCCGGCCATGGA
CGCAATTATCAACCAAACTGGGATTGCGAATGTTTTCACCATCTGTGTTT
CTCGCTTTGGAGGTACCCTGGTCCTCGGCGCAGCGGATAAGTCGTTGTCC
ATTTCGGATTACAGGTATATTCCTATACAAGATGCTCCCGACCCGAAACG
CTATGTAATTCCTGCTAAACCACAATGGAAAATCGGAAACAGAACGATAA
GTGTTCCGTCTGTAACAGCGGCCGTGTGGTCAACAGCTACCACCCAGATC
GCATTCTCCAAGACAACGTTCCTTAATATTTTGGATCATCTTATGGAGCA
TTACTGTCATATTCCGGACCTCTGCAGCACAAGCAGTTGGTTTCGTCCAC
AATCATGTTCCTTTATTCCGGAGGAGACCATTGCAGCGATGCCAAGCATA
ACCATTCCTCTCACAGATGAAATTTCAATTACACTAAACCCGGATGACTA
CCTTATCAAGTACCGAATAGTTGATGGTAGACGCCACCGCTGCGTCGCAA
TGATAGCAACTGACAGTCTTCTGGAGAAAGGATATGGACTATTGCTAGGC
GCAGCGGTTTTAAGAAGATACGCTGTGGTATTCGACCGCGGTGCTTATAG
AGTGGGTGTTGCCGAAGCCAATTTGACCAATTGCGGTCCAGGGACTGGGT
CTGAGGATGGACTGCCAGGAGGACGAGAAGAGCGAGACAACGGTATTGTC
CTCACTGCTGACTCTGTTCCAGCATCTGCTACGGATTCCAGCGCAGGCAG
CGAGGAGGAAAAGCAGTTGGAAGAAGCCGAAGTATGTCGTGCTCAGAAGT
CCTGTTCAAGTTGCGCCAACCAATCTACATGTAGCTTTGGCTACCAGACA
GGCCGTTGCGTCCCAATTCACGAAGCAACCAAGATTCCGTATCCGTTTTG
CGTAGGGGCGTTTTGCGCCTGTTTCGCTGTCGGTGGTTCTGGATGGTACT
TCGGAATAGTAATAGGAGGTTTGCTAGGGGTTACGGTCGTTGTCGTTCTG
GTATTAGTGTATCGGAAGAGACAACAACGTAATCGGTATCAATTGCTTGA
ACAATACGAAGAGCAAGATCTTGAAACGTTTTAG

Coding sequence (CDS) from alignment at tig00004382_pilon:393639..394922+

>Gchil3135.t1 ID=Gchil3135.t1|Name=Gchil3135.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00004382_pilon:393639..394922+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTATGGTGACGGTTCTAGCGGTAATGGGACTTTGTACAGAGACGT
ACTCCGCATTGGAAGTCTCCAGGCGTCTCTACTTTTAGGTGCCATGCACG
AAGAGTCCCGTAACTTTGAGCTTCCTTACACAGATGGAGTCCTTGGTATG
GCCTTCCAACAGGGTGCGTGCCATCCGGCTTGCATTCCTCCGGCCATGGA
CGCAATTATCAACCAAACTGGGATTGCGAATGTTTTCACCATCTGTGTTT
CTCGCTTTGGAGGTACCCTGGTCCTCGGCGCAGCGGATAAGTCGTTGTCC
ATTTCGGATTACAGGTATATTCCTATACAAGATGCTCCCGACCCGAAACG
CTATGTAATTCCTGCTAAACCACAATGGAAAATCGGAAACAGAACGATAA
GTGTTCCGTCTGTAACAGCGGCCGTGTGGTCAACAGCTACCACCCAGATC
GCATTCTCCAAGACAACGTTCCTTAATATTTTGGATCATCTTATGGAGCA
TTACTGTCATATTCCGGACCTCTGCAGCACAAGCAGTTGGTTTCGTCCAC
AATCATGTTCCTTTATTCCGGAGGAGACCATTGCAGCGATGCCAAGCATA
ACCATTCCTCTCACAGATGAAATTTCAATTACACTAAACCCGGATGACTA
CCTTATCAAGTACCGAATAGTTGATGGTAGACGCCACCGCTGCGTCGCAA
TGATAGCAACTGACAGTCTTCTGGAGAAAGGATATGGACTATTGCTAGGC
GCAGCGGTTTTAAGAAGATACGCTGTGGTATTCGACCGCGGTGCTTATAG
AGTGGGTGTTGCCGAAGCCAATTTGACCAATTGCGGTCCAGGGACTGGGT
CTGAGGATGGACTGCCAGGAGGACGAGAAGAGCGAGACAACGGTATTGTC
CTCACTGCTGACTCTGTTCCAGCATCTGCTACGGATTCCAGCGCAGGCAG
CGAGGAGGAAAAGCAGTTGGAAGAAGCCGAAGTATGTCGTGCTCAGAAGT
CCTGTTCAAGTTGCGCCAACCAATCTACATGTAGCTTTGGCTACCAGACA
GGCCGTTGCGTCCCAATTCACGAAGCAACCAAGATTCCGTATCCGTTTTG
CGTAGGGGCGTTTTGCGCCTGTTTCGCTGTCGGTGGTTCTGGATGGTACT
TCGGAATAGTAATAGGAGGTTTGCTAGGGGTTACGGTCGTTGTCGTTCTG
GTATTAGTGTATCGGAAGAGACAACAACGTAATCGGTATCAATTGCTTGA
ACAATACGAAGAGCAAGATCTTGAAACGTTTTAG