Gchil3156.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3156.t1
Unique Name	Gchil3156.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	677

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:571065..573095 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	3.14e-85
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3156	Gchil3156	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 571065..573095 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3156.t1.start1	Gchil3156.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 571065..571067 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3156.t1.CDS1	Gchil3156.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 571065..573095 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3156.t1.exon1	Gchil3156.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 571065..573095 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3156.t1.stop1	Gchil3156.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 573093..573095 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3156.t1	Gchil3156.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 571065..573095 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:571065..573095+
coding sequence from alignment at tig00004382_pilon:571065..573095+

mRNA sequence

>Gchil3156.t1 ID=Gchil3156.t1|Name=Gchil3156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=677bp
MRLLLRRAWLVQLLALPVLMLLLLELSPLSQLPDVMTAALPRALEPSNVT
FSATRVERRGVSLVACCMNRHDTLRRVLRTWRRVQGVDEIVLVDWGSSPP
LLPVVRDVMHNDARIRLLRVDGEREWVLSRAYNLAMRAASYSTLLRTDCD
YAIDAAFLRAHPMSPDDHDDDNNDGVFYAGNYAAARNGNEVHLNGAVLAR
RRHVLRAGGYDERIQTYGWDDEELYARLSAGGLRKLNVSYNHISHVEHGD
TARAQHDVRFVQVEIDLNALLLQQLPQWNASALRHFSHQWAVDAVPASAP
ARYTLLHAVSRPRALKHLVAAEVAQRACDTALGQRLANDYDVPWDVMVSM
DTEQKRLLLRRLNARSCSSSSSSSGRARLLVAHVMHGLGNRLRALGSAMA
FANGTNREVVVVWESDAHLAANMSQLFEVGHMVVLSQFRPKWPFRGYDKY
DKSWGLFDSYNYMEMEGDGAVKGQVVRDRRERHVYFKSAYVMEVGRELSH
VTNWEADNGMVRSLRPVREVVDVVSGVERQHALSDMIGVHIRDRTLERDI
GSVKALSAEYGAEATATMQSWRQKSSFRTFEREMERIVHRDKHARFFVAA
DTVAVLERLREHFGASKVVSVSRTCDGRDALCVRFALADLLCLGRTRALL
GSNWSSFTEAASRLGGRKPRLAGVDF*

spliced messenger RNA

>Gchil3156.t1 ID=Gchil3156.t1|Name=Gchil3156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00004382_pilon:571065..573095+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCTGCTTCTTCGCCGCGCCTGGCTCGTGCAGCTGCTGGCGCTTCC
CGTGCTCATGCTGTTGTTACTGGAGCTGTCGCCGTTGTCGCAGCTACCGG
ACGTGATGACTGCGGCGCTGCCTCGGGCGCTGGAGCCGTCCAACGTGACG
TTTTCCGCCACGCGCGTCGAGCGCCGCGGCGTGTCGCTCGTCGCCTGTTG
CATGAACCGCCATGACACGCTGCGCCGCGTGTTGCGCACTTGGCGCCGTG
TGCAGGGCGTTGATGAGATCGTGTTGGTGGACTGGGGCTCTTCGCCGCCG
TTGCTGCCTGTGGTGCGCGACGTTATGCACAATGATGCGCGCATTCGGCT
GTTGCGCGTGGACGGCGAGCGTGAGTGGGTGCTGTCGCGCGCGTACAACC
TTGCCATGCGCGCCGCGTCGTACAGTACGCTGCTGCGCACCGACTGCGAC
TATGCCATCGACGCCGCGTTTCTGCGAGCGCACCCCATGTCCCCCGACGA
CCATGATGATGATAATAATGACGGCGTGTTCTACGCCGGCAACTACGCCG
CCGCGCGCAACGGCAACGAGGTGCACCTCAACGGCGCCGTGCTGGCGCGT
CGTCGCCACGTGCTGCGCGCCGGCGGCTACGACGAGCGCATCCAGACATA
CGGCTGGGACGACGAGGAACTGTACGCGCGTCTCAGCGCCGGCGGACTGC
GCAAGCTCAACGTGAGCTACAACCACATTTCGCACGTGGAGCACGGCGAC
ACGGCGCGCGCGCAGCACGATGTGCGCTTCGTGCAGGTGGAGATCGACCT
CAACGCTCTGTTGTTGCAACAGCTTCCGCAGTGGAACGCCTCGGCGCTGC
GTCACTTTTCGCACCAATGGGCCGTGGATGCGGTGCCGGCGAGCGCGCCG
GCGCGTTACACGCTGCTGCACGCCGTGTCGCGGCCGCGCGCGCTCAAGCA
TCTGGTGGCGGCGGAGGTGGCACAGCGCGCGTGTGACACGGCGCTCGGGC
AGCGGTTGGCGAACGACTACGACGTGCCGTGGGACGTGATGGTGAGCATG
GACACGGAGCAGAAGCGGTTATTGTTGCGTCGTCTCAACGCGCGGtcttg
ttcttcctcttcttcttcttctGGGCGGGCGCGACTGCTGGTGGCACACG
TGATGCATGGACTGGGCAACCGGCTGCGCGCGCTGGGCAGCGCGATGGCG
TTTGCGAACGGCACGAACCGCGAGGTGGTGGTGGTGTGGGAGAGCGACGC
GCACCTGGCGGCAAACATGTCACAGCTGTTCGAGGTGGGGCACATGGTGG
TGCTGTCGCAGTTCCGGCCCAAGTGGCCGTTCCGCGGGTACGACAAGTAC
GACAAGTCGTGGGGGCTGTTCGACAGCTACAACTACATGGAGATGGAGGG
CGACGGGGCGGTGAAGGGGCAGGTGGTGCGCGACCGACGCGAGCGGCACG
TGTACTTCAAGAGCGCATACGTCATGGAGGTTGGGCGCGAACTGTCGCAT
GTGACCAACTGGGAGGCGGACAATGGCATGGTGCGGTCGCTACGCCCCGT
GCGCGAGGTTGTGGACGTGGTGAGTGGAGTGGAGCGGCAACACGCGCTGA
GCGACATGATAGGGGTGCACATCCGCGACCGCACGCTGGAGCGCGACATT
GGATCGGTGAAAGCACTGAGCGCCGAGTACGGGGCCGAGGCGACGGCCAC
GATGCAGAGCTGGCGACAGAAGAGCTCGTTCCGCACGTTTGAGCGCGAGA
TGGAGCGCATAGTGCACAGAGACAAGCACGCGCGGTTCTTTGTGGCGGCG
GATACGGTGGCGGTGCTGGAAAGGCTGCGCGAGCACTTTGGCGCAAGTAA
GGTGGTGAGCGTGAGTCGCACGTGTGACGGACGCGACGCACTTTGCGTGC
GCTTCGCGTTGGCCGATCTGTTGTGTCTGGGGCGCACTCGCGCGCTGCTG
GGCTCCAACTGGAGCTCGTTCACGGAGGCGGCGTCGCGGCTGGGCGGGCG
CAAGCCGCGTCTGGCCGGCGTTGACTTTTga

protein sequence of Gchil3156.t1

>Gchil3156.t1 ID=Gchil3156.t1|Name=Gchil3156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=677bp
MRLLLRRAWLVQLLALPVLMLLLLELSPLSQLPDVMTAALPRALEPSNVT
FSATRVERRGVSLVACCMNRHDTLRRVLRTWRRVQGVDEIVLVDWGSSPP
LLPVVRDVMHNDARIRLLRVDGEREWVLSRAYNLAMRAASYSTLLRTDCD
YAIDAAFLRAHPMSPDDHDDDNNDGVFYAGNYAAARNGNEVHLNGAVLAR
RRHVLRAGGYDERIQTYGWDDEELYARLSAGGLRKLNVSYNHISHVEHGD
TARAQHDVRFVQVEIDLNALLLQQLPQWNASALRHFSHQWAVDAVPASAP
ARYTLLHAVSRPRALKHLVAAEVAQRACDTALGQRLANDYDVPWDVMVSM
DTEQKRLLLRRLNARSCSSSSSSSGRARLLVAHVMHGLGNRLRALGSAMA
FANGTNREVVVVWESDAHLAANMSQLFEVGHMVVLSQFRPKWPFRGYDKY
DKSWGLFDSYNYMEMEGDGAVKGQVVRDRRERHVYFKSAYVMEVGRELSH
VTNWEADNGMVRSLRPVREVVDVVSGVERQHALSDMIGVHIRDRTLERDI
GSVKALSAEYGAEATATMQSWRQKSSFRTFEREMERIVHRDKHARFFVAA
DTVAVLERLREHFGASKVVSVSRTCDGRDALCVRFALADLLCLGRTRALL
GSNWSSFTEAASRLGGRKPRLAGVDF*

mRNA from alignment at tig00004382_pilon:571065..573095+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3156.t1 ID=Gchil3156.t1|Name=Gchil3156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00004382_pilon:571065..573095+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGGCTGCTTCTTCGCCGCGCCTGGCTCGTGCAGCTGCTGGCGCTTCC
CGTGCTCATGCTGTTGTTACTGGAGCTGTCGCCGTTGTCGCAGCTACCGG
ACGTGATGACTGCGGCGCTGCCTCGGGCGCTGGAGCCGTCCAACGTGACG
TTTTCCGCCACGCGCGTCGAGCGCCGCGGCGTGTCGCTCGTCGCCTGTTG
CATGAACCGCCATGACACGCTGCGCCGCGTGTTGCGCACTTGGCGCCGTG
TGCAGGGCGTTGATGAGATCGTGTTGGTGGACTGGGGCTCTTCGCCGCCG
TTGCTGCCTGTGGTGCGCGACGTTATGCACAATGATGCGCGCATTCGGCT
GTTGCGCGTGGACGGCGAGCGTGAGTGGGTGCTGTCGCGCGCGTACAACC
TTGCCATGCGCGCCGCGTCGTACAGTACGCTGCTGCGCACCGACTGCGAC
TATGCCATCGACGCCGCGTTTCTGCGAGCGCACCCCATGTCCCCCGACGA
CCATGATGATGATAATAATGACGGCGTGTTCTACGCCGGCAACTACGCCG
CCGCGCGCAACGGCAACGAGGTGCACCTCAACGGCGCCGTGCTGGCGCGT
CGTCGCCACGTGCTGCGCGCCGGCGGCTACGACGAGCGCATCCAGACATA
CGGCTGGGACGACGAGGAACTGTACGCGCGTCTCAGCGCCGGCGGACTGC
GCAAGCTCAACGTGAGCTACAACCACATTTCGCACGTGGAGCACGGCGAC
ACGGCGCGCGCGCAGCACGATGTGCGCTTCGTGCAGGTGGAGATCGACCT
CAACGCTCTGTTGTTGCAACAGCTTCCGCAGTGGAACGCCTCGGCGCTGC
GTCACTTTTCGCACCAATGGGCCGTGGATGCGGTGCCGGCGAGCGCGCCG
GCGCGTTACACGCTGCTGCACGCCGTGTCGCGGCCGCGCGCGCTCAAGCA
TCTGGTGGCGGCGGAGGTGGCACAGCGCGCGTGTGACACGGCGCTCGGGC
AGCGGTTGGCGAACGACTACGACGTGCCGTGGGACGTGATGGTGAGCATG
GACACGGAGCAGAAGCGGTTATTGTTGCGTCGTCTCAACGCGCGGtcttg
ttcttcctcttcttcttcttctGGGCGGGCGCGACTGCTGGTGGCACACG
TGATGCATGGACTGGGCAACCGGCTGCGCGCGCTGGGCAGCGCGATGGCG
TTTGCGAACGGCACGAACCGCGAGGTGGTGGTGGTGTGGGAGAGCGACGC
GCACCTGGCGGCAAACATGTCACAGCTGTTCGAGGTGGGGCACATGGTGG
TGCTGTCGCAGTTCCGGCCCAAGTGGCCGTTCCGCGGGTACGACAAGTAC
GACAAGTCGTGGGGGCTGTTCGACAGCTACAACTACATGGAGATGGAGGG
CGACGGGGCGGTGAAGGGGCAGGTGGTGCGCGACCGACGCGAGCGGCACG
TGTACTTCAAGAGCGCATACGTCATGGAGGTTGGGCGCGAACTGTCGCAT
GTGACCAACTGGGAGGCGGACAATGGCATGGTGCGGTCGCTACGCCCCGT
GCGCGAGGTTGTGGACGTGGTGAGTGGAGTGGAGCGGCAACACGCGCTGA
GCGACATGATAGGGGTGCACATCCGCGACCGCACGCTGGAGCGCGACATT
GGATCGGTGAAAGCACTGAGCGCCGAGTACGGGGCCGAGGCGACGGCCAC
GATGCAGAGCTGGCGACAGAAGAGCTCGTTCCGCACGTTTGAGCGCGAGA
TGGAGCGCATAGTGCACAGAGACAAGCACGCGCGGTTCTTTGTGGCGGCG
GATACGGTGGCGGTGCTGGAAAGGCTGCGCGAGCACTTTGGCGCAAGTAA
GGTGGTGAGCGTGAGTCGCACGTGTGACGGACGCGACGCACTTTGCGTGC
GCTTCGCGTTGGCCGATCTGTTGTGTCTGGGGCGCACTCGCGCGCTGCTG
GGCTCCAACTGGAGCTCGTTCACGGAGGCGGCGTCGCGGCTGGGCGGGCG
CAAGCCGCGTCTGGCCGGCGTTGACTTTTga

Coding sequence (CDS) from alignment at tig00004382_pilon:571065..573095+

>Gchil3156.t1 ID=Gchil3156.t1|Name=Gchil3156.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2031bp|location=Sequence derived from alignment at tig00004382_pilon:571065..573095+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGGCTGCTTCTTCGCCGCGCCTGGCTCGTGCAGCTGCTGGCGCTTCC
CGTGCTCATGCTGTTGTTACTGGAGCTGTCGCCGTTGTCGCAGCTACCGG
ACGTGATGACTGCGGCGCTGCCTCGGGCGCTGGAGCCGTCCAACGTGACG
TTTTCCGCCACGCGCGTCGAGCGCCGCGGCGTGTCGCTCGTCGCCTGTTG
CATGAACCGCCATGACACGCTGCGCCGCGTGTTGCGCACTTGGCGCCGTG
TGCAGGGCGTTGATGAGATCGTGTTGGTGGACTGGGGCTCTTCGCCGCCG
TTGCTGCCTGTGGTGCGCGACGTTATGCACAATGATGCGCGCATTCGGCT
GTTGCGCGTGGACGGCGAGCGTGAGTGGGTGCTGTCGCGCGCGTACAACC
TTGCCATGCGCGCCGCGTCGTACAGTACGCTGCTGCGCACCGACTGCGAC
TATGCCATCGACGCCGCGTTTCTGCGAGCGCACCCCATGTCCCCCGACGA
CCATGATGATGATAATAATGACGGCGTGTTCTACGCCGGCAACTACGCCG
CCGCGCGCAACGGCAACGAGGTGCACCTCAACGGCGCCGTGCTGGCGCGT
CGTCGCCACGTGCTGCGCGCCGGCGGCTACGACGAGCGCATCCAGACATA
CGGCTGGGACGACGAGGAACTGTACGCGCGTCTCAGCGCCGGCGGACTGC
GCAAGCTCAACGTGAGCTACAACCACATTTCGCACGTGGAGCACGGCGAC
ACGGCGCGCGCGCAGCACGATGTGCGCTTCGTGCAGGTGGAGATCGACCT
CAACGCTCTGTTGTTGCAACAGCTTCCGCAGTGGAACGCCTCGGCGCTGC
GTCACTTTTCGCACCAATGGGCCGTGGATGCGGTGCCGGCGAGCGCGCCG
GCGCGTTACACGCTGCTGCACGCCGTGTCGCGGCCGCGCGCGCTCAAGCA
TCTGGTGGCGGCGGAGGTGGCACAGCGCGCGTGTGACACGGCGCTCGGGC
AGCGGTTGGCGAACGACTACGACGTGCCGTGGGACGTGATGGTGAGCATG
GACACGGAGCAGAAGCGGTTATTGTTGCGTCGTCTCAACGCGCGGtcttg
ttcttcctcttcttcttcttctGGGCGGGCGCGACTGCTGGTGGCACACG
TGATGCATGGACTGGGCAACCGGCTGCGCGCGCTGGGCAGCGCGATGGCG
TTTGCGAACGGCACGAACCGCGAGGTGGTGGTGGTGTGGGAGAGCGACGC
GCACCTGGCGGCAAACATGTCACAGCTGTTCGAGGTGGGGCACATGGTGG
TGCTGTCGCAGTTCCGGCCCAAGTGGCCGTTCCGCGGGTACGACAAGTAC
GACAAGTCGTGGGGGCTGTTCGACAGCTACAACTACATGGAGATGGAGGG
CGACGGGGCGGTGAAGGGGCAGGTGGTGCGCGACCGACGCGAGCGGCACG
TGTACTTCAAGAGCGCATACGTCATGGAGGTTGGGCGCGAACTGTCGCAT
GTGACCAACTGGGAGGCGGACAATGGCATGGTGCGGTCGCTACGCCCCGT
GCGCGAGGTTGTGGACGTGGTGAGTGGAGTGGAGCGGCAACACGCGCTGA
GCGACATGATAGGGGTGCACATCCGCGACCGCACGCTGGAGCGCGACATT
GGATCGGTGAAAGCACTGAGCGCCGAGTACGGGGCCGAGGCGACGGCCAC
GATGCAGAGCTGGCGACAGAAGAGCTCGTTCCGCACGTTTGAGCGCGAGA
TGGAGCGCATAGTGCACAGAGACAAGCACGCGCGGTTCTTTGTGGCGGCG
GATACGGTGGCGGTGCTGGAAAGGCTGCGCGAGCACTTTGGCGCAAGTAA
GGTGGTGAGCGTGAGTCGCACGTGTGACGGACGCGACGCACTTTGCGTGC
GCTTCGCGTTGGCCGATCTGTTGTGTCTGGGGCGCACTCGCGCGCTGCTG
GGCTCCAACTGGAGCTCGTTCACGGAGGCGGCGTCGCGGCTGGGCGGGCG
CAAGCCGCGTCTGGCCGGCGTTGACTTTTga