Gchil3157.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3157.t1
Unique Name	Gchil3157.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	393

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:575044..576222 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ28411
PFAMs	Trp_Tyr_perm
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03834
KEGG TC	2.A.42.1.1
Evalue	9.5e-37
EggNOG OGs	COG0814@1\|root,2QSPD@2759\|Eukaryota,37J7C@33090\|Viridiplantae,3GAR7@35493\|Streptophyta
Description	Tryptophan/tyrosine permease family
COG category	E
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3157	Gchil3157	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 575044..576222 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3157.t1.start1	Gchil3157.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 575044..575046 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3157.t1.CDS1	Gchil3157.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 575044..576222 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3157.t1.exon1	Gchil3157.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 575044..576222 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3157.t1.stop1	Gchil3157.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 576220..576222 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3157.t1	Gchil3157.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 575044..576222 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:575044..576222+
coding sequence from alignment at tig00004382_pilon:575044..576222+

mRNA sequence

>Gchil3157.t1 ID=Gchil3157.t1|Name=Gchil3157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=393bp
MTGAGVLALPTVSDAVGWAPATLALAAVWAYMVATALLLAELSVNTACVL
GRSDPVSILSLAARTLPRPAAAAAVASYAALHYAILTAYSAQAAVDTAAL
LRALPLPLSLLPSLPPTLGFTALMAALCALPPRAAARVNTLLVAAALAAL
ALLLADALPLADATRLMRAEWHALLHTAGGALLPVLLVSCVFHNVVPVVT
MRLEGHRRRVRRCIVLGSAAPALLFAAYDAAVLSAGGANASLSASASAAA
PPAALFGLLAVATSYVGFVQGLTPLWADARRAAVAAADAPHRRVSGAMLD
VLLTVAPPALLAALWPHAVLRALDAAGTLGVAVLFGVLPPVMVWRARRAS
DMTDMRRFVAGGDAALFMLTLPPLFVLLTRAAALVADSVAIP*

spliced messenger RNA

>Gchil3157.t1 ID=Gchil3157.t1|Name=Gchil3157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00004382_pilon:575044..576222+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGGCGCAGGCGTGCTGGCGCTGCCGACCGTGTCCGACGCAGTGGG
CTGGGCCCCAGCCACGCTGGCGCTGGCCGCCGTGTGGGCCTACATGGTAG
CCACAGCGCTGCTACTGGCCGAGCTCAGCGTCAACACGGCCTGCGTGCTA
GGCCGCTCCGACCCCGTGTCCATActgtcgctcgcagcgcgcacgctacc
gcgtcccgccgccgcagccgccgtcgcCTCGTACGCCGCCCTTCACTACG
CCATTCTCACCGCGTACAGCGCGCAGGCCGCCGTCGACACCGCCGCGCTT
CTCCGCGCGCTGCCGCTGCCCTTGTCGCTGCTGCCATCGCTACCGCCCAC
GTTGGGCTTCACGGCGCTCATGGCcgcgctgtgcgcgctgcccccgcgcg
ccgcggcgcgcgTAAACACGCTGCTGGTGGCCGCCGCGCTGGCCGCGCTG
GCGCTGCTGTTGGCCGACGCGCTGCCGCTGGCGGACGCCACGCGCCTCAT
GCGCGCCGAGTGGCACGCGTTGCTACACACCGCCGGCGGCGCCTTGCTTC
CCGTGTTGCTCGTGTCTTGCGTGTTTCACAACGTGGTGCCCGTGGTGACC
ATGCGACTTGAGGGGCATCGCCGACGCGTGCGACGTTGCATCGTGTTGGG
CTCCGCCGCCCCGGCACTCTTGTTCGCGGCGTACGACGCAGCCGTGCTGT
CGGCGGGCGGCGCCAATGCGTCGCTGTCGGCGTCGGCCAGCGCGGCCGCG
CCGCCGGCCGCACTCTTCGGCCTGCTTGCCGTGGCCACCAGCTACGTCGG
CTTCGTGCAGGGCCTCACGCCGCTGTGGgccgacgcacgccgtgcggcgg
tcgccgccgccgatgcgccgcaccgccgcGTCAGCGGCGCCATGCTTGAC
GTGCTGCTCACCGTGGCGCCGCCCGCGCTGCTTGCTGCGCTGTGGCCGCA
CGCCGTGCTGCGTGCGCTGGACGCGGCTGGTACGCTTGGCGTGGCCGTGC
TCTTCGGCGTGTTGCCGCCCGTCATGGTGTGGCGCGCGCGACGGGCGTCG
GACATGACCGACATGCGTCGCTTTGTTGCCGGCGGTGACGCCGCCTTGTT
CATGTTGACTTTGCCGCCTTTGTTTGTGCTGCTCACGCGCGCCGCTGCCC
TCGTCGCCGACTCCGTCGCTATCCCGTAA

protein sequence of Gchil3157.t1

>Gchil3157.t1 ID=Gchil3157.t1|Name=Gchil3157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=393bp
MTGAGVLALPTVSDAVGWAPATLALAAVWAYMVATALLLAELSVNTACVL
GRSDPVSILSLAARTLPRPAAAAAVASYAALHYAILTAYSAQAAVDTAAL
LRALPLPLSLLPSLPPTLGFTALMAALCALPPRAAARVNTLLVAAALAAL
ALLLADALPLADATRLMRAEWHALLHTAGGALLPVLLVSCVFHNVVPVVT
MRLEGHRRRVRRCIVLGSAAPALLFAAYDAAVLSAGGANASLSASASAAA
PPAALFGLLAVATSYVGFVQGLTPLWADARRAAVAAADAPHRRVSGAMLD
VLLTVAPPALLAALWPHAVLRALDAAGTLGVAVLFGVLPPVMVWRARRAS
DMTDMRRFVAGGDAALFMLTLPPLFVLLTRAAALVADSVAIP*

mRNA from alignment at tig00004382_pilon:575044..576222+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3157.t1 ID=Gchil3157.t1|Name=Gchil3157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1179bp|location=Sequence derived from alignment at tig00004382_pilon:575044..576222+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGGCGCAGGCGTGCTGGCGCTGCCGACCGTGTCCGACGCAGTGGG
CTGGGCCCCAGCCACGCTGGCGCTGGCCGCCGTGTGGGCCTACATGGTAG
CCACAGCGCTGCTACTGGCCGAGCTCAGCGTCAACACGGCCTGCGTGCTA
GGCCGCTCCGACCCCGTGTCCATActgtcgctcgcagcgcgcacgctacc
gcgtcccgccgccgcagccgccgtcgcCTCGTACGCCGCCCTTCACTACG
CCATTCTCACCGCGTACAGCGCGCAGGCCGCCGTCGACACCGCCGCGCTT
CTCCGCGCGCTGCCGCTGCCCTTGTCGCTGCTGCCATCGCTACCGCCCAC
GTTGGGCTTCACGGCGCTCATGGCcgcgctgtgcgcgctgcccccgcgcg
ccgcggcgcgcgTAAACACGCTGCTGGTGGCCGCCGCGCTGGCCGCGCTG
GCGCTGCTGTTGGCCGACGCGCTGCCGCTGGCGGACGCCACGCGCCTCAT
GCGCGCCGAGTGGCACGCGTTGCTACACACCGCCGGCGGCGCCTTGCTTC
CCGTGTTGCTCGTGTCTTGCGTGTTTCACAACGTGGTGCCCGTGGTGACC
ATGCGACTTGAGGGGCATCGCCGACGCGTGCGACGTTGCATCGTGTTGGG
CTCCGCCGCCCCGGCACTCTTGTTCGCGGCGTACGACGCAGCCGTGCTGT
CGGCGGGCGGCGCCAATGCGTCGCTGTCGGCGTCGGCCAGCGCGGCCGCG
CCGCCGGCCGCACTCTTCGGCCTGCTTGCCGTGGCCACCAGCTACGTCGG
CTTCGTGCAGGGCCTCACGCCGCTGTGGgccgacgcacgccgtgcggcgg
tcgccgccgccgatgcgccgcaccgccgcGTCAGCGGCGCCATGCTTGAC
GTGCTGCTCACCGTGGCGCCGCCCGCGCTGCTTGCTGCGCTGTGGCCGCA
CGCCGTGCTGCGTGCGCTGGACGCGGCTGGTACGCTTGGCGTGGCCGTGC
TCTTCGGCGTGTTGCCGCCCGTCATGGTGTGGCGCGCGCGACGGGCGTCG
GACATGACCGACATGCGTCGCTTTGTTGCCGGCGGTGACGCCGCCTTGTT
CATGTTGACTTTGCCGCCTTTGTTTGTGCTGCTCACGCGCGCCGCTGCCC
TCGTCGCCGACTCCGTCGCTATCCCGTAA

Coding sequence (CDS) from alignment at tig00004382_pilon:575044..576222+

>Gchil3157.t1 ID=Gchil3157.t1|Name=Gchil3157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1179bp|location=Sequence derived from alignment at tig00004382_pilon:575044..576222+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGGGCGCAGGCGTGCTGGCGCTGCCGACCGTGTCCGACGCAGTGGG
CTGGGCCCCAGCCACGCTGGCGCTGGCCGCCGTGTGGGCCTACATGGTAG
CCACAGCGCTGCTACTGGCCGAGCTCAGCGTCAACACGGCCTGCGTGCTA
GGCCGCTCCGACCCCGTGTCCATActgtcgctcgcagcgcgcacgctacc
gcgtcccgccgccgcagccgccgtcgcCTCGTACGCCGCCCTTCACTACG
CCATTCTCACCGCGTACAGCGCGCAGGCCGCCGTCGACACCGCCGCGCTT
CTCCGCGCGCTGCCGCTGCCCTTGTCGCTGCTGCCATCGCTACCGCCCAC
GTTGGGCTTCACGGCGCTCATGGCcgcgctgtgcgcgctgcccccgcgcg
ccgcggcgcgcgTAAACACGCTGCTGGTGGCCGCCGCGCTGGCCGCGCTG
GCGCTGCTGTTGGCCGACGCGCTGCCGCTGGCGGACGCCACGCGCCTCAT
GCGCGCCGAGTGGCACGCGTTGCTACACACCGCCGGCGGCGCCTTGCTTC
CCGTGTTGCTCGTGTCTTGCGTGTTTCACAACGTGGTGCCCGTGGTGACC
ATGCGACTTGAGGGGCATCGCCGACGCGTGCGACGTTGCATCGTGTTGGG
CTCCGCCGCCCCGGCACTCTTGTTCGCGGCGTACGACGCAGCCGTGCTGT
CGGCGGGCGGCGCCAATGCGTCGCTGTCGGCGTCGGCCAGCGCGGCCGCG
CCGCCGGCCGCACTCTTCGGCCTGCTTGCCGTGGCCACCAGCTACGTCGG
CTTCGTGCAGGGCCTCACGCCGCTGTGGgccgacgcacgccgtgcggcgg
tcgccgccgccgatgcgccgcaccgccgcGTCAGCGGCGCCATGCTTGAC
GTGCTGCTCACCGTGGCGCCGCCCGCGCTGCTTGCTGCGCTGTGGCCGCA
CGCCGTGCTGCGTGCGCTGGACGCGGCTGGTACGCTTGGCGTGGCCGTGC
TCTTCGGCGTGTTGCCGCCCGTCATGGTGTGGCGCGCGCGACGGGCGTCG
GACATGACCGACATGCGTCGCTTTGTTGCCGGCGGTGACGCCGCCTTGTT
CATGTTGACTTTGCCGCCTTTGTTTGTGCTGCTCACGCGCGCCGCTGCCC
TCGTCGCCGACTCCGTCGCTATCCCGTAA