Gchil3169.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3169.t1
Unique Name	Gchil3169.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	651

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004382_pilon	contig	tig00004382_pilon:603843..605795 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S130_294V6.1
PFAMs	Utp12,WD40
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K14546
KEGG Pathway	ko03008,map03008
GOs	GO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2000232,GO:2000234,GO:2001141
Evalue	6.03e-13
EggNOG OGs	KOG4547@1\|root,KOG4547@2759\|Eukaryota,37MVW@33090\|Viridiplantae,3GEX1@35493\|Streptophyta
Description	WD repeat-containing protein
COG category	S
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3169	Gchil3169	Gracilaria chilensis NLEC103_M9 male	gene	tig00004382_pilon 603843..605795 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3169.t1.stop1	Gchil3169.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004382_pilon 603843..603845 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3169.t1.CDS1	Gchil3169.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004382_pilon 603843..605795 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3169.t1.exon1	Gchil3169.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004382_pilon 603843..605795 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3169.t1.start1	Gchil3169.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004382_pilon 605793..605795 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3169.t1	Gchil3169.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004382_pilon 603843..605795 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004382_pilon:603843..605795-
coding sequence from alignment at tig00004382_pilon:603843..605795-

mRNA sequence

>Gchil3169.t1 ID=Gchil3169.t1|Name=Gchil3169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=651bp
MGANRIPPPPHSRLWAVAPDISAVAHACSPSKLALFRAPHFSPEHVALPI
LPARLSLAAAESPSDPPSVLFSTAAGHVYLSNRLLLRLPSAPSTLVHDYR
HALIASVRLLTIIPIASPNEHINVAHAHASPPSAALLVDGERALLASQQI
TLHELPSARLVARFAGHASPVACLARLSSQAFVSAAEQERVLLVWHLQSQ
TTTPRKRRRITPTAPSLSLAVPRAGVRAMVADKHSNGKHFAAVVGSNEVF
VWRTLPENAAGPVECSFVVRAPDSPVLTVLFAEQARLTVFYGLGAKPEVY
IVDLNKVSTNLVELPSASFALITADVKVKPNSNVQLVKRAVALQASNVPA
APVLSKQKQRLEDERVRRGAEDERVDRGSEDGVEVIEDPSIHEKLAALGV
TSDTPRSKVPIVPALEATRLDSRIVILCQAVRVGDDSIFDRIIATTQDMT
TIRNTVDQLPPEVATGALLDMLVDRLERLPQRVDQLLKWIKTILIEHAGT
FISQQRNQTLHALGAIIDARTQNLEALSRLEGRLELVVGQAQRQKRLQQF
KLSSARAQVEYTYDPDGAGKKRTDDDSEGESSEEESDGSSSSEDEDDTGV
MSDSDSEHSDHYEGNGGARQNGDVKMNGNRSESASEESSGSEREAGDEGD
*

spliced messenger RNA

>Gchil3169.t1 ID=Gchil3169.t1|Name=Gchil3169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at tig00004382_pilon:603843..605795- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCCAACCGTATTCCACCGCCTCCTCACTCGCGGCTCTGGGCTGT
CGCCCCTGACATTTCTGCGGTCGCGCATGCCTGCTCCCCCTCAAAGCTCG
CGCTCTTCCGCGCGCCTCATTTTTCGCCGGAGCACGTTGCGCTTCCTATA
CTTCCTGCACGTCTCTCGCTTGCTGCAGCTGAGTCCCCTTCCGATCCACC
CTCTGTCCTTTTTTCCACTGCTGCAGGCCATGTTTATCTGTCTAATCGTC
TGTTACTTCGCCTGCCGTCCGCACCGTCCACTTTAGTTCATGACTATCGC
CATGCGCTTATTGCCTCGGTACGCTTGCTTACCATTATTCCTATCGCCTC
TCCAAATGAACATATCAACGTCGCACATGCTCATGCTTCCCCGCCTTCAG
CTGCGCTACTAGTTGATGGGGAGCGAGCTTTATTGGCCAGTCAGCAGATA
ACCCTGCACGAGCTCCCCTCCGCACGTCTTGTGGCCCGTTTTGCAGGGCA
TGCATCGCCCGTCGCATGTTTAGCACGTCTATCATCGCAGGCCTTCGTAT
CGGCTGCAGAACAAGAGCGAGTGCTCCTTGTGTGGCATCTGCAATCACAA
ACCACAACCCCGCGGAAACGTCGTCGCATCACCCCAACTGCACCATCGCT
TTCGTTGGCAGTACCGAGGGCGGGGGTGCGCGCAATGGTCGCTGATAAGC
ATTCAAATGGGAAGCATTTTGCTGCGGTCGTGGGCTCAAATGAGGTCTTT
GTATGGCGAACTTTGCCTGAGAATGCTGCCGGCCCGGTTGAGTGTTCTTT
TGTTGTGCGCGCCCCGGACTCACCGGTTTTGACTGTGCTTTTTGCGGAGC
AGGCGCGGTTGACCGTGTTTTACGGTCTGGGCGCTAAGCCGGAAGTGTAC
ATCGTGGATTTGAACAAAGTTTCTACAAATCTGGTTGAGCTTCCTAGTGC
GTCTTTTGCGCTTATTACTGCTGATGTGAAAGTGAAGCCGAACTCTAATG
TCCAACTTGTGAAGCGGGCTGTTGCGCTTCAAGCTAGCAACGTGCCAGCT
GCGCCGGTTCTATCAAAGCAAAAACAGAGGCTTGAGGATGAAAGAGTACG
TCGCGGTGCTGAGGATGAAAGAGTAGATCGCGGCTCTGAGGATGGTGTTG
AAGTTATTGAAGATCCTTCAATACATGAAAAGCTCGCCGCTTTGGGCGTC
ACCTCCGATACACCGAGGTCTAAGGTTCCCATCGTACCTGCTTTGGAGGC
TACTCGACTTGATTCTCGGATTGTCATTTTGTGTCAAGCAGTAAGAGTGG
GGGATGATAGCATCTTTGATCGTATTATTGCGACCACGCAGGATATGACC
ACAATACGAAACACAGTAGACCAATTACCGCCGGAGGTGGCTACCGGCGC
TTTGTTGGACATGCTTGTGGATCGGCTGGAGCGACTCCCACAGCGCGTGG
ATCAATTACTGAAGTGGATCAAGACGATTCTCATTGAGCACGCTGGAACG
TTTATCAGTCAGCAACGGAACCAAACACTGCATGCTTTGGGCGCCATTAT
CGACGCGCGTACGCAAAACTTGGAAGCGTTGTCTAGACTGGAGGGACGAT
TGGAGCTCGTGGTGGGACAGGCTCAGCGACAAAAGCGATTGCAACAGTTC
AAGTTGTCCTCTGCGCGCGCGCAGGTGGAATACACCTATGATCCGGACGG
TGCAGGGAAAAAAAGGACGGATGATGACAGTGAGGGTGAAAGTAGCGAAG
AGGAAAGCGATGGTAGTTCCAGCAGTGAAGATGAAGATGACACGGGTGTC
ATGAGTGATTCGGATAGCGAGCACAGTGATCACTACGAGGGAAACGGAGG
TGCGCGGCAAAACGGGGATGTGAAGATGAACGGGAACAGGAGCGAATCAG
CTTCTGAGGAAAGCTCAGGTAGTGAACGAGAAGCGGGCGATGAGGGCGAT
TAG

protein sequence of Gchil3169.t1

>Gchil3169.t1 ID=Gchil3169.t1|Name=Gchil3169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=651bp
MGANRIPPPPHSRLWAVAPDISAVAHACSPSKLALFRAPHFSPEHVALPI
LPARLSLAAAESPSDPPSVLFSTAAGHVYLSNRLLLRLPSAPSTLVHDYR
HALIASVRLLTIIPIASPNEHINVAHAHASPPSAALLVDGERALLASQQI
TLHELPSARLVARFAGHASPVACLARLSSQAFVSAAEQERVLLVWHLQSQ
TTTPRKRRRITPTAPSLSLAVPRAGVRAMVADKHSNGKHFAAVVGSNEVF
VWRTLPENAAGPVECSFVVRAPDSPVLTVLFAEQARLTVFYGLGAKPEVY
IVDLNKVSTNLVELPSASFALITADVKVKPNSNVQLVKRAVALQASNVPA
APVLSKQKQRLEDERVRRGAEDERVDRGSEDGVEVIEDPSIHEKLAALGV
TSDTPRSKVPIVPALEATRLDSRIVILCQAVRVGDDSIFDRIIATTQDMT
TIRNTVDQLPPEVATGALLDMLVDRLERLPQRVDQLLKWIKTILIEHAGT
FISQQRNQTLHALGAIIDARTQNLEALSRLEGRLELVVGQAQRQKRLQQF
KLSSARAQVEYTYDPDGAGKKRTDDDSEGESSEEESDGSSSSEDEDDTGV
MSDSDSEHSDHYEGNGGARQNGDVKMNGNRSESASEESSGSEREAGDEGD
*

mRNA from alignment at tig00004382_pilon:603843..605795-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3169.t1 ID=Gchil3169.t1|Name=Gchil3169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1953bp|location=Sequence derived from alignment at tig00004382_pilon:603843..605795- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGCCAACCGTATTCCACCGCCTCCTCACTCGCGGCTCTGGGCTGT
CGCCCCTGACATTTCTGCGGTCGCGCATGCCTGCTCCCCCTCAAAGCTCG
CGCTCTTCCGCGCGCCTCATTTTTCGCCGGAGCACGTTGCGCTTCCTATA
CTTCCTGCACGTCTCTCGCTTGCTGCAGCTGAGTCCCCTTCCGATCCACC
CTCTGTCCTTTTTTCCACTGCTGCAGGCCATGTTTATCTGTCTAATCGTC
TGTTACTTCGCCTGCCGTCCGCACCGTCCACTTTAGTTCATGACTATCGC
CATGCGCTTATTGCCTCGGTACGCTTGCTTACCATTATTCCTATCGCCTC
TCCAAATGAACATATCAACGTCGCACATGCTCATGCTTCCCCGCCTTCAG
CTGCGCTACTAGTTGATGGGGAGCGAGCTTTATTGGCCAGTCAGCAGATA
ACCCTGCACGAGCTCCCCTCCGCACGTCTTGTGGCCCGTTTTGCAGGGCA
TGCATCGCCCGTCGCATGTTTAGCACGTCTATCATCGCAGGCCTTCGTAT
CGGCTGCAGAACAAGAGCGAGTGCTCCTTGTGTGGCATCTGCAATCACAA
ACCACAACCCCGCGGAAACGTCGTCGCATCACCCCAACTGCACCATCGCT
TTCGTTGGCAGTACCGAGGGCGGGGGTGCGCGCAATGGTCGCTGATAAGC
ATTCAAATGGGAAGCATTTTGCTGCGGTCGTGGGCTCAAATGAGGTCTTT
GTATGGCGAACTTTGCCTGAGAATGCTGCCGGCCCGGTTGAGTGTTCTTT
TGTTGTGCGCGCCCCGGACTCACCGGTTTTGACTGTGCTTTTTGCGGAGC
AGGCGCGGTTGACCGTGTTTTACGGTCTGGGCGCTAAGCCGGAAGTGTAC
ATCGTGGATTTGAACAAAGTTTCTACAAATCTGGTTGAGCTTCCTAGTGC
GTCTTTTGCGCTTATTACTGCTGATGTGAAAGTGAAGCCGAACTCTAATG
TCCAACTTGTGAAGCGGGCTGTTGCGCTTCAAGCTAGCAACGTGCCAGCT
GCGCCGGTTCTATCAAAGCAAAAACAGAGGCTTGAGGATGAAAGAGTACG
TCGCGGTGCTGAGGATGAAAGAGTAGATCGCGGCTCTGAGGATGGTGTTG
AAGTTATTGAAGATCCTTCAATACATGAAAAGCTCGCCGCTTTGGGCGTC
ACCTCCGATACACCGAGGTCTAAGGTTCCCATCGTACCTGCTTTGGAGGC
TACTCGACTTGATTCTCGGATTGTCATTTTGTGTCAAGCAGTAAGAGTGG
GGGATGATAGCATCTTTGATCGTATTATTGCGACCACGCAGGATATGACC
ACAATACGAAACACAGTAGACCAATTACCGCCGGAGGTGGCTACCGGCGC
TTTGTTGGACATGCTTGTGGATCGGCTGGAGCGACTCCCACAGCGCGTGG
ATCAATTACTGAAGTGGATCAAGACGATTCTCATTGAGCACGCTGGAACG
TTTATCAGTCAGCAACGGAACCAAACACTGCATGCTTTGGGCGCCATTAT
CGACGCGCGTACGCAAAACTTGGAAGCGTTGTCTAGACTGGAGGGACGAT
TGGAGCTCGTGGTGGGACAGGCTCAGCGACAAAAGCGATTGCAACAGTTC
AAGTTGTCCTCTGCGCGCGCGCAGGTGGAATACACCTATGATCCGGACGG
TGCAGGGAAAAAAAGGACGGATGATGACAGTGAGGGTGAAAGTAGCGAAG
AGGAAAGCGATGGTAGTTCCAGCAGTGAAGATGAAGATGACACGGGTGTC
ATGAGTGATTCGGATAGCGAGCACAGTGATCACTACGAGGGAAACGGAGG
TGCGCGGCAAAACGGGGATGTGAAGATGAACGGGAACAGGAGCGAATCAG
CTTCTGAGGAAAGCTCAGGTAGTGAACGAGAAGCGGGCGATGAGGGCGAT
TAG

Coding sequence (CDS) from alignment at tig00004382_pilon:603843..605795-

>Gchil3169.t1 ID=Gchil3169.t1|Name=Gchil3169.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1953bp|location=Sequence derived from alignment at tig00004382_pilon:603843..605795- (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGCCAACCGTATTCCACCGCCTCCTCACTCGCGGCTCTGGGCTGT
CGCCCCTGACATTTCTGCGGTCGCGCATGCCTGCTCCCCCTCAAAGCTCG
CGCTCTTCCGCGCGCCTCATTTTTCGCCGGAGCACGTTGCGCTTCCTATA
CTTCCTGCACGTCTCTCGCTTGCTGCAGCTGAGTCCCCTTCCGATCCACC
CTCTGTCCTTTTTTCCACTGCTGCAGGCCATGTTTATCTGTCTAATCGTC
TGTTACTTCGCCTGCCGTCCGCACCGTCCACTTTAGTTCATGACTATCGC
CATGCGCTTATTGCCTCGGTACGCTTGCTTACCATTATTCCTATCGCCTC
TCCAAATGAACATATCAACGTCGCACATGCTCATGCTTCCCCGCCTTCAG
CTGCGCTACTAGTTGATGGGGAGCGAGCTTTATTGGCCAGTCAGCAGATA
ACCCTGCACGAGCTCCCCTCCGCACGTCTTGTGGCCCGTTTTGCAGGGCA
TGCATCGCCCGTCGCATGTTTAGCACGTCTATCATCGCAGGCCTTCGTAT
CGGCTGCAGAACAAGAGCGAGTGCTCCTTGTGTGGCATCTGCAATCACAA
ACCACAACCCCGCGGAAACGTCGTCGCATCACCCCAACTGCACCATCGCT
TTCGTTGGCAGTACCGAGGGCGGGGGTGCGCGCAATGGTCGCTGATAAGC
ATTCAAATGGGAAGCATTTTGCTGCGGTCGTGGGCTCAAATGAGGTCTTT
GTATGGCGAACTTTGCCTGAGAATGCTGCCGGCCCGGTTGAGTGTTCTTT
TGTTGTGCGCGCCCCGGACTCACCGGTTTTGACTGTGCTTTTTGCGGAGC
AGGCGCGGTTGACCGTGTTTTACGGTCTGGGCGCTAAGCCGGAAGTGTAC
ATCGTGGATTTGAACAAAGTTTCTACAAATCTGGTTGAGCTTCCTAGTGC
GTCTTTTGCGCTTATTACTGCTGATGTGAAAGTGAAGCCGAACTCTAATG
TCCAACTTGTGAAGCGGGCTGTTGCGCTTCAAGCTAGCAACGTGCCAGCT
GCGCCGGTTCTATCAAAGCAAAAACAGAGGCTTGAGGATGAAAGAGTACG
TCGCGGTGCTGAGGATGAAAGAGTAGATCGCGGCTCTGAGGATGGTGTTG
AAGTTATTGAAGATCCTTCAATACATGAAAAGCTCGCCGCTTTGGGCGTC
ACCTCCGATACACCGAGGTCTAAGGTTCCCATCGTACCTGCTTTGGAGGC
TACTCGACTTGATTCTCGGATTGTCATTTTGTGTCAAGCAGTAAGAGTGG
GGGATGATAGCATCTTTGATCGTATTATTGCGACCACGCAGGATATGACC
ACAATACGAAACACAGTAGACCAATTACCGCCGGAGGTGGCTACCGGCGC
TTTGTTGGACATGCTTGTGGATCGGCTGGAGCGACTCCCACAGCGCGTGG
ATCAATTACTGAAGTGGATCAAGACGATTCTCATTGAGCACGCTGGAACG
TTTATCAGTCAGCAACGGAACCAAACACTGCATGCTTTGGGCGCCATTAT
CGACGCGCGTACGCAAAACTTGGAAGCGTTGTCTAGACTGGAGGGACGAT
TGGAGCTCGTGGTGGGACAGGCTCAGCGACAAAAGCGATTGCAACAGTTC
AAGTTGTCCTCTGCGCGCGCGCAGGTGGAATACACCTATGATCCGGACGG
TGCAGGGAAAAAAAGGACGGATGATGACAGTGAGGGTGAAAGTAGCGAAG
AGGAAAGCGATGGTAGTTCCAGCAGTGAAGATGAAGATGACACGGGTGTC
ATGAGTGATTCGGATAGCGAGCACAGTGATCACTACGAGGGAAACGGAGG
TGCGCGGCAAAACGGGGATGTGAAGATGAACGGGAACAGGAGCGAATCAG
CTTCTGAGGAAAGCTCAGGTAGTGAACGAGAAGCGGGCGATGAGGGCGAT
TAG