Gchil3832.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3832.t1
Unique NameGchil3832.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:835833..836969 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS263CT
PFAMsPfkB
Max annot lvl2759|Eukaryota
Evalue4.38e-88
EggNOG OGsKOG2947@1|root,KOG2947@2759|Eukaryota
DescriptionBelongs to the carbohydrate kinase PfkB family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3832Gchil3832Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 835833..836969 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3832.t1.stop1Gchil3832.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 835833..835835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3832.t1.CDS1Gchil3832.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 835833..836969 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3832.t1.exon1Gchil3832.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 835833..836969 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3832.t1.start1Gchil3832.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 836967..836969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3832.t1Gchil3832.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 835833..836969 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3832.t1 ID=Gchil3832.t1|Name=Gchil3832.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=379bp
MAIPGTAFIPTFPLRVARPPPLCGRFPTRMTSGDSSASPVEVPNFLRDVR
VLGLGLSAVDLLAKVKHFPKADDKIRTEELRVFGGGNVANSLTGVRRLGV
QCRLASKLGNDMYGRVALEELKRDGIDTRFVQIKDGVNTTFTYVIVDSTH
HTRTCISTPAREDLFESDVNELMLDGVHLVMLDGRHTIAAIRLAQLAAER
RIPVLLDIERNRPHIENLLPYADYIITNSTYPFVFSPEAITPAQALRKML
DHCRARFVISTRGSSGSILVRAQSPRKMSSGVRVLVQRRSFLDDSSKREY
ELLECPAWSVDKIVDTTGAGDAFIAGVAYGIVANMDLERMLSLASYVAAT
KLGALGSRTALPRREHIPDTLTATLPSL*
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spliced messenger RNA

>Gchil3832.t1 ID=Gchil3832.t1|Name=Gchil3832.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000010_pilon:835833..836969- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATCCCAGGCACGGCCTTCATTCCCACGTTTCCGCTGCGCGTCGC
GCGCCCACCGCCACTGTGTGGTCGCTTTCCCACACGCATGACATCCGGGG
ACAGCAGTGCATCACCTGTCGAGGTGCCGAACTTTCTGCGGGACGTGCGC
GTGCTGGGCTTGGGGCTCTCAGCCGTCGATTTGCTTGCCAAGGTCAAGCA
CTTTCCGAAGGCGGACGACAAGATTCGCACCGAGGAGCTTCGCGTGTTTG
GCGGCGGAAATGTGGCCAATTCGCTCACGGGCGTCAGGCGACTTGGCGTT
CAATGTCGTTTGGCTTCCAAGCTTGGAAATGACATGTATGGACGCGTTGC
ATTGGAGGAATTGAAACGGGATGGTATCGATACGCGTTTTGTACAGATCA
AAGACGGCGTCAATACAACCTTTACGTATGTTATTGTCGATAGCACACAT
CACACCCGCACTTGCATATCTACTCCCGCCAGAGAAGACCTTTTTGAGAG
CGATGTGAATGAGCTCATGTTGGATGGTGTGCATTTGGTTATGCTTGATG
GCCGACATACAATCGCTGCAATCCGTCTCGCACAACTGGCTGCGGAGCGC
CGAATACCAGTTCTTCTTGACATTGAACGCAATCGCCCACACATTGAGAA
CTTACTTCCATACGCCGATTACATCATCACCAACAGTACATATCCGTTCG
TCTTTTCCCCCGAGGCAATCACACCAGCCCAAGCACTCCGGAAGATGCTT
GACCATTGCCGAGCACGCTTTGTCATATCCACTCGCGGATCATCCGGTAG
CATACTCGTGCGCGCACAGTCTCCACGAAAAATGAGCTCAGGAGTTAGAG
TCTTGGTGCAGAGAAGAAGCTTTTTAGATGATAGTTCAAAACGAGAGTAT
GAGCTCTTGGAATGCCCTGCGTGGTCTGTTGATAAGATTGTCGATACAAC
CGGTGCTGGAGACGCTTTTATTGCCGGTGTCGCATATGGGATAGTTGCAA
ATATGGATTTGGAACGAATGCTATCTCTTGCTTCTTACGTTGCTGCCACA
AAACTTGGAGCTCTTGGGTCCAGAACTGCATTGCCGAGACGGGAACATAT
TCCAGACACTCTCACAGCCACTTTACCTTCTTTGTAA
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protein sequence of Gchil3832.t1

>Gchil3832.t1 ID=Gchil3832.t1|Name=Gchil3832.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=379bp
MAIPGTAFIPTFPLRVARPPPLCGRFPTRMTSGDSSASPVEVPNFLRDVR
VLGLGLSAVDLLAKVKHFPKADDKIRTEELRVFGGGNVANSLTGVRRLGV
QCRLASKLGNDMYGRVALEELKRDGIDTRFVQIKDGVNTTFTYVIVDSTH
HTRTCISTPAREDLFESDVNELMLDGVHLVMLDGRHTIAAIRLAQLAAER
RIPVLLDIERNRPHIENLLPYADYIITNSTYPFVFSPEAITPAQALRKML
DHCRARFVISTRGSSGSILVRAQSPRKMSSGVRVLVQRRSFLDDSSKREY
ELLECPAWSVDKIVDTTGAGDAFIAGVAYGIVANMDLERMLSLASYVAAT
KLGALGSRTALPRREHIPDTLTATLPSL*
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mRNA from alignment at tig00000010_pilon:835833..836969-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3832.t1 ID=Gchil3832.t1|Name=Gchil3832.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000010_pilon:835833..836969- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCATCCCAGGCACGGCCTTCATTCCCACGTTTCCGCTGCGCGTCGC
GCGCCCACCGCCACTGTGTGGTCGCTTTCCCACACGCATGACATCCGGGG
ACAGCAGTGCATCACCTGTCGAGGTGCCGAACTTTCTGCGGGACGTGCGC
GTGCTGGGCTTGGGGCTCTCAGCCGTCGATTTGCTTGCCAAGGTCAAGCA
CTTTCCGAAGGCGGACGACAAGATTCGCACCGAGGAGCTTCGCGTGTTTG
GCGGCGGAAATGTGGCCAATTCGCTCACGGGCGTCAGGCGACTTGGCGTT
CAATGTCGTTTGGCTTCCAAGCTTGGAAATGACATGTATGGACGCGTTGC
ATTGGAGGAATTGAAACGGGATGGTATCGATACGCGTTTTGTACAGATCA
AAGACGGCGTCAATACAACCTTTACGTATGTTATTGTCGATAGCACACAT
CACACCCGCACTTGCATATCTACTCCCGCCAGAGAAGACCTTTTTGAGAG
CGATGTGAATGAGCTCATGTTGGATGGTGTGCATTTGGTTATGCTTGATG
GCCGACATACAATCGCTGCAATCCGTCTCGCACAACTGGCTGCGGAGCGC
CGAATACCAGTTCTTCTTGACATTGAACGCAATCGCCCACACATTGAGAA
CTTACTTCCATACGCCGATTACATCATCACCAACAGTACATATCCGTTCG
TCTTTTCCCCCGAGGCAATCACACCAGCCCAAGCACTCCGGAAGATGCTT
GACCATTGCCGAGCACGCTTTGTCATATCCACTCGCGGATCATCCGGTAG
CATACTCGTGCGCGCACAGTCTCCACGAAAAATGAGCTCAGGAGTTAGAG
TCTTGGTGCAGAGAAGAAGCTTTTTAGATGATAGTTCAAAACGAGAGTAT
GAGCTCTTGGAATGCCCTGCGTGGTCTGTTGATAAGATTGTCGATACAAC
CGGTGCTGGAGACGCTTTTATTGCCGGTGTCGCATATGGGATAGTTGCAA
ATATGGATTTGGAACGAATGCTATCTCTTGCTTCTTACGTTGCTGCCACA
AAACTTGGAGCTCTTGGGTCCAGAACTGCATTGCCGAGACGGGAACATAT
TCCAGACACTCTCACAGCCACTTTACCTTCTTTGTAA
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Coding sequence (CDS) from alignment at tig00000010_pilon:835833..836969-

>Gchil3832.t1 ID=Gchil3832.t1|Name=Gchil3832.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000010_pilon:835833..836969- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCATCCCAGGCACGGCCTTCATTCCCACGTTTCCGCTGCGCGTCGC
GCGCCCACCGCCACTGTGTGGTCGCTTTCCCACACGCATGACATCCGGGG
ACAGCAGTGCATCACCTGTCGAGGTGCCGAACTTTCTGCGGGACGTGCGC
GTGCTGGGCTTGGGGCTCTCAGCCGTCGATTTGCTTGCCAAGGTCAAGCA
CTTTCCGAAGGCGGACGACAAGATTCGCACCGAGGAGCTTCGCGTGTTTG
GCGGCGGAAATGTGGCCAATTCGCTCACGGGCGTCAGGCGACTTGGCGTT
CAATGTCGTTTGGCTTCCAAGCTTGGAAATGACATGTATGGACGCGTTGC
ATTGGAGGAATTGAAACGGGATGGTATCGATACGCGTTTTGTACAGATCA
AAGACGGCGTCAATACAACCTTTACGTATGTTATTGTCGATAGCACACAT
CACACCCGCACTTGCATATCTACTCCCGCCAGAGAAGACCTTTTTGAGAG
CGATGTGAATGAGCTCATGTTGGATGGTGTGCATTTGGTTATGCTTGATG
GCCGACATACAATCGCTGCAATCCGTCTCGCACAACTGGCTGCGGAGCGC
CGAATACCAGTTCTTCTTGACATTGAACGCAATCGCCCACACATTGAGAA
CTTACTTCCATACGCCGATTACATCATCACCAACAGTACATATCCGTTCG
TCTTTTCCCCCGAGGCAATCACACCAGCCCAAGCACTCCGGAAGATGCTT
GACCATTGCCGAGCACGCTTTGTCATATCCACTCGCGGATCATCCGGTAG
CATACTCGTGCGCGCACAGTCTCCACGAAAAATGAGCTCAGGAGTTAGAG
TCTTGGTGCAGAGAAGAAGCTTTTTAGATGATAGTTCAAAACGAGAGTAT
GAGCTCTTGGAATGCCCTGCGTGGTCTGTTGATAAGATTGTCGATACAAC
CGGTGCTGGAGACGCTTTTATTGCCGGTGTCGCATATGGGATAGTTGCAA
ATATGGATTTGGAACGAATGCTATCTCTTGCTTCTTACGTTGCTGCCACA
AAACTTGGAGCTCTTGGGTCCAGAACTGCATTGCCGAGACGGGAACATAT
TCCAGACACTCTCACAGCCACTTTACCTTCTTTGTAA
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