Gchil564.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil564.t1
Unique Name	Gchil564.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	491

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:224038..225510 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705996.1
PFAMs	Guanylate_kin,efThoc1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12878
KEGG Pathway	ko03013,ko03040,map03013,map03040
KEGG Module	M00405,M00406
GOs	GO:0000160,GO:0000347,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006351,GO:0006354,GO:0006366,GO:0006368,GO:0006396,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009723,GO:0009725,GO:0009755,GO:0009873,GO:0009892,GO:0009987,GO:0010033,GO:0010267,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016246,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0023052,GO:0030422,GO:0031047,GO:0031050,GO:0031503,GO:0032774,GO:0032870,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035556,GO:0040029,GO:0042221,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070727,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071369,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0097659,GO:0098542,GO:1901360,GO:1901362,GO:1901576,GO:1901698,GO:1901699
Evalue	4.76e-25
EggNOG OGs	KOG2491@1\|root,KOG2491@2759\|Eukaryota
Description	negative regulation of isotype switching to IgA isotypes
COG category	S
BRITE	ko00000,ko00001,ko00002,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil564	Gchil564	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 224038..225510 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil564.t1.stop1	Gchil564.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 224038..224040 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil564.t1.CDS1	Gchil564.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 224038..225510 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil564.t1.exon1	Gchil564.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 224038..225510 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil564.t1.start1	Gchil564.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 225508..225510 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil564.t1	Gchil564.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 224038..225510 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:224038..225510-
coding sequence from alignment at tig00004380_pilon:224038..225510-

mRNA sequence

>Gchil564.t1 ID=Gchil564.t1|Name=Gchil564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=491bp
MSPANEPDSKQGPVEQYLQTKDVLDKVLREKLKDPPTELAEELIEQFPAF
NFFPTLLLLLTEKLRSPSPFDALYVVDIGTSLSVKERLDQHAPVTFLHYV
FSFITLDDIVANLDAIRKRISALPRTPRRQLYFIKLFQSAIERDTHGLNA
VRSGRLRLMLAESLRAWHPSGMNRRGAYASHPIAYDPLPEGHVDAALYNA
LWGLQKFLQNPSLAETDRSWKEAASALDTVIAAFESTAVRSDTVPYGVDY
PTSPNVLNLQLADTRFRRHMLVQYAIFLHHLETTASLATSEKDSQTLRQS
VDFCATLFGRSGDGEKLKFRVLALLEKDEGNRLKRFVQSLFQRERVWLRW
KRTNYSHLETGVLKSPTVFKKRTVLWHQKDKTPGVNSWLQRIESLETQAE
NGDLYGALSDRSPVPGVEELVQALQEDFDESGLDEESKRKNDRKFKWRAL
RTLMDDDVGVLRQLSQSPQLDLDGVLHARTSRTAGCNSQE*

spliced messenger RNA

>Gchil564.t1 ID=Gchil564.t1|Name=Gchil564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00004380_pilon:224038..225510- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCAGCAAATGAACCCGACTCCAAGCAAGGTCCAGTTGAGCAGTA
TCTACAAACGAAAGATGTTCTAGATAAAGTGCTGAGAGAAAAGCTCAAAG
ACCCGCCTACAGAGCTTGCCGAGGAGCTCATCGAACAGTTTCCAGCATTC
AACTTCTTTCCCACACTGCTTCTTTTGCTCACCGAAAAACTTCGGTCACC
CTCCCCGTTTGACGCGCTCTATGTTGTAGACATTGGTACAAGCCTATCGG
TGAAGGAGCGTTTGGATCAACATGCACCGGTCACCTTCCTTCACTACGTG
TTCTCGTTCATCACCCTGGACGACATCGTAGCGAACCTGGACGCCATTCG
CAAACGCATCAGTGCGTTGCCTCGCACCCCTCGTCGGCAGTTGTACTTTA
TCAAGCTATTTCAGTCAGCCATCGAGCGTGACACGCATGGGCTCAATGCG
GTTAGGTCCGGTCGTCTGCGCCTGATGCTGGCCGAATCGTTACGTGCGTG
GCACCCGTCGGGCATGAATCGACGCGGTGCGTACGCGAGCCACCCGATTG
CATACGACCCACTTCCGGAGGGGCATGTGGACGCGGCGCTTTACAACGCG
CTATGGGGTCTGCAGAAGTTCCTTCAGAACCCCTCTCTTGCCGAAACGGA
CAGGTCGTGGAAAGAGGCTGCCAGTGCGCTTGATACCGTCATAGCGGCGT
TCGAAAGCACCGCCGTAAGAAGCGATACCGTACCCTATGGCGTGGACTAC
CCCACTTCACCCAACGTGCTTAACCTGCAGCTGGCCGACACTCGCTTCCG
GCGACATATGCTTGTTCAGTATGCCATCTTTCTACATCACCTCGAGACAA
CAGCGTCTTTGGCGACCAGCGAGAAGGACAGCCAGACGTTGCGGCAGAGT
GTGGACTTTTGCGCTACACTATTCGGGAGGAGCGGGGATGGGGAAAAGCT
CAAGTTTCGCGTGCTGGCTCTGTTGGAGAAGGACGAAGGCAATCGGCTTA
AGCGTTTCGTACAGTCTCTGTTTCAGAGAGAGCGAGTGTGGCTTCGATGG
AAGCGGACGAACTACTCACATCTGGAGACCGGCGTGCTCAAATCGCCGAC
TGTGTTCAAGAAACGCACAGTGCTGTGGCATCAGAAGGATAAGACGCCTG
GAGTCAATAGCTGGCTGCAGCGAATCGAGTCGTTAGAAACTCAAGCAGAA
AATGGTGACTTGTATGGCGCGTTGTCTGACAGATCCCCGGTGCCTGGGGT
GGAGGAGCTTGTGCAAGCGTTGCAGGAAGACTTTGATGAGTCTGGTTTGG
ACGAAGAGTCGAAGCGAAAGAATGACCGAAAGTTCAAGTGGAGAGCGCTA
CGCACACTCATGGACGACGACGTGGGTGTGCTGAGGCAACTGTCACAGTC
GCCCCAGCTCGACCTTGACGGTGTTCTACACGCCAGAACATCACGAACCG
CGGGTTGCAATTCACAAGAATGA

protein sequence of Gchil564.t1

>Gchil564.t1 ID=Gchil564.t1|Name=Gchil564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=491bp
MSPANEPDSKQGPVEQYLQTKDVLDKVLREKLKDPPTELAEELIEQFPAF
NFFPTLLLLLTEKLRSPSPFDALYVVDIGTSLSVKERLDQHAPVTFLHYV
FSFITLDDIVANLDAIRKRISALPRTPRRQLYFIKLFQSAIERDTHGLNA
VRSGRLRLMLAESLRAWHPSGMNRRGAYASHPIAYDPLPEGHVDAALYNA
LWGLQKFLQNPSLAETDRSWKEAASALDTVIAAFESTAVRSDTVPYGVDY
PTSPNVLNLQLADTRFRRHMLVQYAIFLHHLETTASLATSEKDSQTLRQS
VDFCATLFGRSGDGEKLKFRVLALLEKDEGNRLKRFVQSLFQRERVWLRW
KRTNYSHLETGVLKSPTVFKKRTVLWHQKDKTPGVNSWLQRIESLETQAE
NGDLYGALSDRSPVPGVEELVQALQEDFDESGLDEESKRKNDRKFKWRAL
RTLMDDDVGVLRQLSQSPQLDLDGVLHARTSRTAGCNSQE*

mRNA from alignment at tig00004380_pilon:224038..225510-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil564.t1 ID=Gchil564.t1|Name=Gchil564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00004380_pilon:224038..225510- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCAGCAAATGAACCCGACTCCAAGCAAGGTCCAGTTGAGCAGTA
TCTACAAACGAAAGATGTTCTAGATAAAGTGCTGAGAGAAAAGCTCAAAG
ACCCGCCTACAGAGCTTGCCGAGGAGCTCATCGAACAGTTTCCAGCATTC
AACTTCTTTCCCACACTGCTTCTTTTGCTCACCGAAAAACTTCGGTCACC
CTCCCCGTTTGACGCGCTCTATGTTGTAGACATTGGTACAAGCCTATCGG
TGAAGGAGCGTTTGGATCAACATGCACCGGTCACCTTCCTTCACTACGTG
TTCTCGTTCATCACCCTGGACGACATCGTAGCGAACCTGGACGCCATTCG
CAAACGCATCAGTGCGTTGCCTCGCACCCCTCGTCGGCAGTTGTACTTTA
TCAAGCTATTTCAGTCAGCCATCGAGCGTGACACGCATGGGCTCAATGCG
GTTAGGTCCGGTCGTCTGCGCCTGATGCTGGCCGAATCGTTACGTGCGTG
GCACCCGTCGGGCATGAATCGACGCGGTGCGTACGCGAGCCACCCGATTG
CATACGACCCACTTCCGGAGGGGCATGTGGACGCGGCGCTTTACAACGCG
CTATGGGGTCTGCAGAAGTTCCTTCAGAACCCCTCTCTTGCCGAAACGGA
CAGGTCGTGGAAAGAGGCTGCCAGTGCGCTTGATACCGTCATAGCGGCGT
TCGAAAGCACCGCCGTAAGAAGCGATACCGTACCCTATGGCGTGGACTAC
CCCACTTCACCCAACGTGCTTAACCTGCAGCTGGCCGACACTCGCTTCCG
GCGACATATGCTTGTTCAGTATGCCATCTTTCTACATCACCTCGAGACAA
CAGCGTCTTTGGCGACCAGCGAGAAGGACAGCCAGACGTTGCGGCAGAGT
GTGGACTTTTGCGCTACACTATTCGGGAGGAGCGGGGATGGGGAAAAGCT
CAAGTTTCGCGTGCTGGCTCTGTTGGAGAAGGACGAAGGCAATCGGCTTA
AGCGTTTCGTACAGTCTCTGTTTCAGAGAGAGCGAGTGTGGCTTCGATGG
AAGCGGACGAACTACTCACATCTGGAGACCGGCGTGCTCAAATCGCCGAC
TGTGTTCAAGAAACGCACAGTGCTGTGGCATCAGAAGGATAAGACGCCTG
GAGTCAATAGCTGGCTGCAGCGAATCGAGTCGTTAGAAACTCAAGCAGAA
AATGGTGACTTGTATGGCGCGTTGTCTGACAGATCCCCGGTGCCTGGGGT
GGAGGAGCTTGTGCAAGCGTTGCAGGAAGACTTTGATGAGTCTGGTTTGG
ACGAAGAGTCGAAGCGAAAGAATGACCGAAAGTTCAAGTGGAGAGCGCTA
CGCACACTCATGGACGACGACGTGGGTGTGCTGAGGCAACTGTCACAGTC
GCCCCAGCTCGACCTTGACGGTGTTCTACACGCCAGAACATCACGAACCG
CGGGTTGCAATTCACAAGAATGA

Coding sequence (CDS) from alignment at tig00004380_pilon:224038..225510-

>Gchil564.t1 ID=Gchil564.t1|Name=Gchil564.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1473bp|location=Sequence derived from alignment at tig00004380_pilon:224038..225510- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTCCAGCAAATGAACCCGACTCCAAGCAAGGTCCAGTTGAGCAGTA
TCTACAAACGAAAGATGTTCTAGATAAAGTGCTGAGAGAAAAGCTCAAAG
ACCCGCCTACAGAGCTTGCCGAGGAGCTCATCGAACAGTTTCCAGCATTC
AACTTCTTTCCCACACTGCTTCTTTTGCTCACCGAAAAACTTCGGTCACC
CTCCCCGTTTGACGCGCTCTATGTTGTAGACATTGGTACAAGCCTATCGG
TGAAGGAGCGTTTGGATCAACATGCACCGGTCACCTTCCTTCACTACGTG
TTCTCGTTCATCACCCTGGACGACATCGTAGCGAACCTGGACGCCATTCG
CAAACGCATCAGTGCGTTGCCTCGCACCCCTCGTCGGCAGTTGTACTTTA
TCAAGCTATTTCAGTCAGCCATCGAGCGTGACACGCATGGGCTCAATGCG
GTTAGGTCCGGTCGTCTGCGCCTGATGCTGGCCGAATCGTTACGTGCGTG
GCACCCGTCGGGCATGAATCGACGCGGTGCGTACGCGAGCCACCCGATTG
CATACGACCCACTTCCGGAGGGGCATGTGGACGCGGCGCTTTACAACGCG
CTATGGGGTCTGCAGAAGTTCCTTCAGAACCCCTCTCTTGCCGAAACGGA
CAGGTCGTGGAAAGAGGCTGCCAGTGCGCTTGATACCGTCATAGCGGCGT
TCGAAAGCACCGCCGTAAGAAGCGATACCGTACCCTATGGCGTGGACTAC
CCCACTTCACCCAACGTGCTTAACCTGCAGCTGGCCGACACTCGCTTCCG
GCGACATATGCTTGTTCAGTATGCCATCTTTCTACATCACCTCGAGACAA
CAGCGTCTTTGGCGACCAGCGAGAAGGACAGCCAGACGTTGCGGCAGAGT
GTGGACTTTTGCGCTACACTATTCGGGAGGAGCGGGGATGGGGAAAAGCT
CAAGTTTCGCGTGCTGGCTCTGTTGGAGAAGGACGAAGGCAATCGGCTTA
AGCGTTTCGTACAGTCTCTGTTTCAGAGAGAGCGAGTGTGGCTTCGATGG
AAGCGGACGAACTACTCACATCTGGAGACCGGCGTGCTCAAATCGCCGAC
TGTGTTCAAGAAACGCACAGTGCTGTGGCATCAGAAGGATAAGACGCCTG
GAGTCAATAGCTGGCTGCAGCGAATCGAGTCGTTAGAAACTCAAGCAGAA
AATGGTGACTTGTATGGCGCGTTGTCTGACAGATCCCCGGTGCCTGGGGT
GGAGGAGCTTGTGCAAGCGTTGCAGGAAGACTTTGATGAGTCTGGTTTGG
ACGAAGAGTCGAAGCGAAAGAATGACCGAAAGTTCAAGTGGAGAGCGCTA
CGCACACTCATGGACGACGACGTGGGTGTGCTGAGGCAACTGTCACAGTC
GCCCCAGCTCGACCTTGACGGTGTTCTACACGCCAGAACATCACGAACCG
CGGGTTGCAATTCACAAGAATGA