Gchil584.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil584.t1
Unique Name	Gchil584.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	434

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:392524..393825 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	115417.EPrPW00000013350
PFAMs	WD40
Max annot lvl	121069\|Pythiales
Evalue	8.96e-23
EggNOG OGs	COG2319@1\|root,KOG0646@2759\|Eukaryota,1MGCW@121069\|Pythiales
Description	WD domain-containing protein. Source PGD
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil584	Gchil584	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 392524..393825 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil584.t1.start1	Gchil584.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 392524..392526 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil584.t1.CDS1	Gchil584.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 392524..393825 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil584.t1.exon1	Gchil584.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 392524..393825 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil584.t1.stop1	Gchil584.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 393823..393825 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil584.t1	Gchil584.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 392524..393825 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:392524..393825+
coding sequence from alignment at tig00004380_pilon:392524..393825+

mRNA sequence

>Gchil584.t1 ID=Gchil584.t1|Name=Gchil584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=434bp
MCYDILSICGELGSLHHHTPPHTNPSKTQQNCRPANKNCTALCNQTLVTS
SQARNNKNTNLTLHSLNRLPTRNFTPPEPISCVATSNSSNLLFAGGTSGR
CYVWYVFTGRLFAVWDAHVGSINAASFCDDDEAILTVGADAAARLFLLKD
VTGTNDGRPDPCLELAGHTLPITCLAMGYAGVSARVVTASVDRSARVWHL
ASATCIATIALSAPAVDVVLTFDEAVVFVALTNGYIVCAHLHSLPLGSVT
ASSRLKRIPAPTKGVFPKCLALSPEIGHLIVGYTDGIVRIYDSRSLQMIS
VYAKHNTTAPITAVLATSGSSLPEKPLFERVPERVMDKSLGETFIPLVDM
SNGCHTRDAAWSVMSETLNMVFGTDDSYGLENGDHNSSQEKDMEKRLQRE
SDLLFQIQTLRSRNQELQSAAAKLIQVAESEFL*

spliced messenger RNA

>Gchil584.t1 ID=Gchil584.t1|Name=Gchil584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00004380_pilon:392524..393825+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTTACGATATCCTTTCTATCTGTGGTGAACTCGGATCTTTGCATCA
TCATACTCCACCTCATACCAATCCGTCAAAGACCCAGCAGAACTGTCGCC
CCGCTAATAAAAACTGTACAGCGCTCTGTAATCAAACCCTGGTTACGTCA
TCACAGGCGCGAAACAACAAGAACACCAACCTAACCCTCCACTCATTGAA
TCGCCTGCCCACGAGAAACTTTACTCCACCGGAACCTATTTCTTGCGTGG
CTACGTCCAATTCTTCGAACCTTCTCTTTGCAGGTGGAACATCAGGCCGA
TGTTACGTTTGGTATGTCTTCACCGGAAGACTCTTTGCCGTGTGGGATGC
ACATGTTGGTTCTATAAACGCTGCTTCGTTTTGTGATGATGATGAGGCAA
TATTAACTGTTGGTGCGGACGCAGCAGCTCGCCTTTTCCTTTTGAAGGAT
GTTACCGGTACAAATGATGGGCGACCAGACCCGTGTCTAGAGCTCGCTGG
TCACACCCTTCCGATCACCTGTCTTGCAATGGGATACGCTGGAGTGTCTG
CCAGAGTTGTCACGGCTTCTGTTGATAGAAGTGCTCGGGTGTGGCACTTG
GCTAGCGCTACTTGTATTGCTACTATCGCTTTATCGGCCCCTGCTGTCGA
TGTTGTTCTCACCTTCGATGAAGCAGTCGTGTTCGTGGCGCTAACAAATG
GATACATAGTCTGCGCACATTTGCATTCATTACCGTTGGGCTCGGTCACA
GCATCCTCACGTCTTAAGAGAATACCAGCGCCCACAAAGGGTGTCTTCCC
AAAATGTCTCGCTCTTTCTCCTGAAATTGGGCATTTAATTGTAGGGTATA
CCGATGGAATTGTGCGAATATACGACTCCCGGTCCTTGCAGATGATTAGT
GTGTACGCGAAGCACAATACAACAGCTCCGATAACTGCAGTGTTGGCCAC
TTCTGGTTCGAGCCTTCCAGAGAAGCCATTGTTTGAGCGTGTACCAGAAC
GGGTGATGGACAAATCTCTCGGGGAAACATTCATACCGCTTGTTGATATG
AGCAATGGTTGTCACACAAGGGATGCAGCATGGTCTGTGATGTCAGAAAC
ACTAAATATGGTATTTGGAACTGATGACAGCTATGGCCTTGAAAACGGAG
ACCATAACTCGTCTCAAGAAAAAGACATGGAGAAGCGCTTGCAGCGAGAG
AGCGACTTGCTTTTCCAGATACAAACCTTACGAAGTCGAAACCAGGAGCT
TCAGAGTGCCGCTGCAAAGCTCATACAGGTCGCCGAATCGGAATTCTTGT
GA

protein sequence of Gchil584.t1

>Gchil584.t1 ID=Gchil584.t1|Name=Gchil584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=434bp
MCYDILSICGELGSLHHHTPPHTNPSKTQQNCRPANKNCTALCNQTLVTS
SQARNNKNTNLTLHSLNRLPTRNFTPPEPISCVATSNSSNLLFAGGTSGR
CYVWYVFTGRLFAVWDAHVGSINAASFCDDDEAILTVGADAAARLFLLKD
VTGTNDGRPDPCLELAGHTLPITCLAMGYAGVSARVVTASVDRSARVWHL
ASATCIATIALSAPAVDVVLTFDEAVVFVALTNGYIVCAHLHSLPLGSVT
ASSRLKRIPAPTKGVFPKCLALSPEIGHLIVGYTDGIVRIYDSRSLQMIS
VYAKHNTTAPITAVLATSGSSLPEKPLFERVPERVMDKSLGETFIPLVDM
SNGCHTRDAAWSVMSETLNMVFGTDDSYGLENGDHNSSQEKDMEKRLQRE
SDLLFQIQTLRSRNQELQSAAAKLIQVAESEFL*

mRNA from alignment at tig00004380_pilon:392524..393825+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil584.t1 ID=Gchil584.t1|Name=Gchil584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00004380_pilon:392524..393825+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGTTACGATATCCTTTCTATCTGTGGTGAACTCGGATCTTTGCATCA
TCATACTCCACCTCATACCAATCCGTCAAAGACCCAGCAGAACTGTCGCC
CCGCTAATAAAAACTGTACAGCGCTCTGTAATCAAACCCTGGTTACGTCA
TCACAGGCGCGAAACAACAAGAACACCAACCTAACCCTCCACTCATTGAA
TCGCCTGCCCACGAGAAACTTTACTCCACCGGAACCTATTTCTTGCGTGG
CTACGTCCAATTCTTCGAACCTTCTCTTTGCAGGTGGAACATCAGGCCGA
TGTTACGTTTGGTATGTCTTCACCGGAAGACTCTTTGCCGTGTGGGATGC
ACATGTTGGTTCTATAAACGCTGCTTCGTTTTGTGATGATGATGAGGCAA
TATTAACTGTTGGTGCGGACGCAGCAGCTCGCCTTTTCCTTTTGAAGGAT
GTTACCGGTACAAATGATGGGCGACCAGACCCGTGTCTAGAGCTCGCTGG
TCACACCCTTCCGATCACCTGTCTTGCAATGGGATACGCTGGAGTGTCTG
CCAGAGTTGTCACGGCTTCTGTTGATAGAAGTGCTCGGGTGTGGCACTTG
GCTAGCGCTACTTGTATTGCTACTATCGCTTTATCGGCCCCTGCTGTCGA
TGTTGTTCTCACCTTCGATGAAGCAGTCGTGTTCGTGGCGCTAACAAATG
GATACATAGTCTGCGCACATTTGCATTCATTACCGTTGGGCTCGGTCACA
GCATCCTCACGTCTTAAGAGAATACCAGCGCCCACAAAGGGTGTCTTCCC
AAAATGTCTCGCTCTTTCTCCTGAAATTGGGCATTTAATTGTAGGGTATA
CCGATGGAATTGTGCGAATATACGACTCCCGGTCCTTGCAGATGATTAGT
GTGTACGCGAAGCACAATACAACAGCTCCGATAACTGCAGTGTTGGCCAC
TTCTGGTTCGAGCCTTCCAGAGAAGCCATTGTTTGAGCGTGTACCAGAAC
GGGTGATGGACAAATCTCTCGGGGAAACATTCATACCGCTTGTTGATATG
AGCAATGGTTGTCACACAAGGGATGCAGCATGGTCTGTGATGTCAGAAAC
ACTAAATATGGTATTTGGAACTGATGACAGCTATGGCCTTGAAAACGGAG
ACCATAACTCGTCTCAAGAAAAAGACATGGAGAAGCGCTTGCAGCGAGAG
AGCGACTTGCTTTTCCAGATACAAACCTTACGAAGTCGAAACCAGGAGCT
TCAGAGTGCCGCTGCAAAGCTCATACAGGTCGCCGAATCGGAATTCTTGT
GA

Coding sequence (CDS) from alignment at tig00004380_pilon:392524..393825+

>Gchil584.t1 ID=Gchil584.t1|Name=Gchil584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00004380_pilon:392524..393825+ (Gracilaria chilensis NLEC103_M9 male)
ATGTGTTACGATATCCTTTCTATCTGTGGTGAACTCGGATCTTTGCATCA
TCATACTCCACCTCATACCAATCCGTCAAAGACCCAGCAGAACTGTCGCC
CCGCTAATAAAAACTGTACAGCGCTCTGTAATCAAACCCTGGTTACGTCA
TCACAGGCGCGAAACAACAAGAACACCAACCTAACCCTCCACTCATTGAA
TCGCCTGCCCACGAGAAACTTTACTCCACCGGAACCTATTTCTTGCGTGG
CTACGTCCAATTCTTCGAACCTTCTCTTTGCAGGTGGAACATCAGGCCGA
TGTTACGTTTGGTATGTCTTCACCGGAAGACTCTTTGCCGTGTGGGATGC
ACATGTTGGTTCTATAAACGCTGCTTCGTTTTGTGATGATGATGAGGCAA
TATTAACTGTTGGTGCGGACGCAGCAGCTCGCCTTTTCCTTTTGAAGGAT
GTTACCGGTACAAATGATGGGCGACCAGACCCGTGTCTAGAGCTCGCTGG
TCACACCCTTCCGATCACCTGTCTTGCAATGGGATACGCTGGAGTGTCTG
CCAGAGTTGTCACGGCTTCTGTTGATAGAAGTGCTCGGGTGTGGCACTTG
GCTAGCGCTACTTGTATTGCTACTATCGCTTTATCGGCCCCTGCTGTCGA
TGTTGTTCTCACCTTCGATGAAGCAGTCGTGTTCGTGGCGCTAACAAATG
GATACATAGTCTGCGCACATTTGCATTCATTACCGTTGGGCTCGGTCACA
GCATCCTCACGTCTTAAGAGAATACCAGCGCCCACAAAGGGTGTCTTCCC
AAAATGTCTCGCTCTTTCTCCTGAAATTGGGCATTTAATTGTAGGGTATA
CCGATGGAATTGTGCGAATATACGACTCCCGGTCCTTGCAGATGATTAGT
GTGTACGCGAAGCACAATACAACAGCTCCGATAACTGCAGTGTTGGCCAC
TTCTGGTTCGAGCCTTCCAGAGAAGCCATTGTTTGAGCGTGTACCAGAAC
GGGTGATGGACAAATCTCTCGGGGAAACATTCATACCGCTTGTTGATATG
AGCAATGGTTGTCACACAAGGGATGCAGCATGGTCTGTGATGTCAGAAAC
ACTAAATATGGTATTTGGAACTGATGACAGCTATGGCCTTGAAAACGGAG
ACCATAACTCGTCTCAAGAAAAAGACATGGAGAAGCGCTTGCAGCGAGAG
AGCGACTTGCTTTTCCAGATACAAACCTTACGAAGTCGAAACCAGGAGCT
TCAGAGTGCCGCTGCAAAGCTCATACAGGTCGCCGAATCGGAATTCTTGT
GA