Gchil3779.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3779.t1
Unique Name	Gchil3779.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	217

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:334265..334915 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	44689.DDB0191199
PFAMs	Proteasome
Max annot lvl	554915\|Amoebozoa
KEGG ko	ko:K02738
KEGG Pathway	ko03050,map03050
KEGG Module	M00340
GOs	GO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005839,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0019538,GO:0019774,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044424,GO:0044464,GO:0071704,GO:1901564,GO:1902494,GO:1905368,GO:1905369
Evalue	4.86e-104
EggNOG OGs	KOG0174@1\|root,KOG0174@2759\|Eukaryota,3X8P7@554915\|Amoebozoa
EC	3.4.25.1
Description	proteasome subunit
COG category	O
BRITE	ko00000,ko00001,ko00002,ko01000,ko01002,ko03051

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3779	Gchil3779	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 334265..334915 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3779.t1.stop1	Gchil3779.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 334265..334267 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3779.t1.CDS1	Gchil3779.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 334265..334915 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3779.t1.exon1	Gchil3779.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 334265..334915 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3779.t1.start1	Gchil3779.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 334913..334915 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3779.t1	Gchil3779.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 334265..334915 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:334265..334915-
coding sequence from alignment at tig00000010_pilon:334265..334915-

mRNA sequence

>Gchil3779.t1 ID=Gchil3779.t1|Name=Gchil3779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=217bp
MTAIQPEWTSTEHSMGTSIMAVAFDGGVVMGADSRTTTGSYIANRVSDKI
TPMTDKIFCCRSGSAADTQVISDYVRHYLSMHAIELSEDPDVGTAAKIFR
TFCYYNKEQLMAGIIVAGYDAKKGGQVFTIPLGGALVKQPFAIGGSGSSY
IYGYCDANFKEGMTKDECKSFVKNALSLAMSRDGSSGGVIRLVIIDKQGA
TREFHPGNKLPEFWQG*

spliced messenger RNA

>Gchil3779.t1 ID=Gchil3779.t1|Name=Gchil3779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000010_pilon:334265..334915- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCGATCCAACCAGAATGGACAAGCACCGAGCATTCGATGGGAAC
TTCCATTATGGCAGTCGCGTTCGACGGTGGCGTGGTGATGGGAGCGGACT
CTCGAACCACTACGGGTTCCTATATTGCAAATCGAGTCTCCGATAAGATC
ACGCCAATGACTGACAAGATCTTCTGTTGTCGTTCAGGATCTGCAGCCGA
CACTCAGGTCATCTCCGACTATGTCCGCCATTATCTTTCAATGCACGCCA
TCGAACTATCAGAAGATCCAGACGTAGGCACTGCTGCAAAGATTTTCCGA
ACATTCTGCTACTACAACAAAGAACAATTGATGGCAGGAATCATCGTGGC
GGGATACGATGCGAAGAAAGGTGGTCAGGTTTTTACGATTCCACTCGGCG
GAGCTTTGGTTAAACAACCCTTCGCGATCGGTGGTTCTGGATCTTCCTAC
ATCTATGGATACTGCGATGCAAATTTCAAGGAGGGTATGACGAAGGATGA
GTGCAAAAGCTTCGTGAAAAATGCTCTATCGCTTGCAATGTCTCGGGATG
GTAGTTCCGGTGGGGTTATTCGGTTAGTGATTATTGACAAACAGGGCGCC
ACAAGAGAATTTCATCCTGGAAACAAACTACCAGAGTTTTGGCAGGGGTA
A

protein sequence of Gchil3779.t1

>Gchil3779.t1 ID=Gchil3779.t1|Name=Gchil3779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=217bp
MTAIQPEWTSTEHSMGTSIMAVAFDGGVVMGADSRTTTGSYIANRVSDKI
TPMTDKIFCCRSGSAADTQVISDYVRHYLSMHAIELSEDPDVGTAAKIFR
TFCYYNKEQLMAGIIVAGYDAKKGGQVFTIPLGGALVKQPFAIGGSGSSY
IYGYCDANFKEGMTKDECKSFVKNALSLAMSRDGSSGGVIRLVIIDKQGA
TREFHPGNKLPEFWQG*

mRNA from alignment at tig00000010_pilon:334265..334915-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3779.t1 ID=Gchil3779.t1|Name=Gchil3779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=651bp|location=Sequence derived from alignment at tig00000010_pilon:334265..334915- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCGATCCAACCAGAATGGACAAGCACCGAGCATTCGATGGGAAC
TTCCATTATGGCAGTCGCGTTCGACGGTGGCGTGGTGATGGGAGCGGACT
CTCGAACCACTACGGGTTCCTATATTGCAAATCGAGTCTCCGATAAGATC
ACGCCAATGACTGACAAGATCTTCTGTTGTCGTTCAGGATCTGCAGCCGA
CACTCAGGTCATCTCCGACTATGTCCGCCATTATCTTTCAATGCACGCCA
TCGAACTATCAGAAGATCCAGACGTAGGCACTGCTGCAAAGATTTTCCGA
ACATTCTGCTACTACAACAAAGAACAATTGATGGCAGGAATCATCGTGGC
GGGATACGATGCGAAGAAAGGTGGTCAGGTTTTTACGATTCCACTCGGCG
GAGCTTTGGTTAAACAACCCTTCGCGATCGGTGGTTCTGGATCTTCCTAC
ATCTATGGATACTGCGATGCAAATTTCAAGGAGGGTATGACGAAGGATGA
GTGCAAAAGCTTCGTGAAAAATGCTCTATCGCTTGCAATGTCTCGGGATG
GTAGTTCCGGTGGGGTTATTCGGTTAGTGATTATTGACAAACAGGGCGCC
ACAAGAGAATTTCATCCTGGAAACAAACTACCAGAGTTTTGGCAGGGGTA
A

Coding sequence (CDS) from alignment at tig00000010_pilon:334265..334915-

>Gchil3779.t1 ID=Gchil3779.t1|Name=Gchil3779.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=651bp|location=Sequence derived from alignment at tig00000010_pilon:334265..334915- (Gracilaria chilensis NLEC103_M9 male)
ATGACTGCGATCCAACCAGAATGGACAAGCACCGAGCATTCGATGGGAAC
TTCCATTATGGCAGTCGCGTTCGACGGTGGCGTGGTGATGGGAGCGGACT
CTCGAACCACTACGGGTTCCTATATTGCAAATCGAGTCTCCGATAAGATC
ACGCCAATGACTGACAAGATCTTCTGTTGTCGTTCAGGATCTGCAGCCGA
CACTCAGGTCATCTCCGACTATGTCCGCCATTATCTTTCAATGCACGCCA
TCGAACTATCAGAAGATCCAGACGTAGGCACTGCTGCAAAGATTTTCCGA
ACATTCTGCTACTACAACAAAGAACAATTGATGGCAGGAATCATCGTGGC
GGGATACGATGCGAAGAAAGGTGGTCAGGTTTTTACGATTCCACTCGGCG
GAGCTTTGGTTAAACAACCCTTCGCGATCGGTGGTTCTGGATCTTCCTAC
ATCTATGGATACTGCGATGCAAATTTCAAGGAGGGTATGACGAAGGATGA
GTGCAAAAGCTTCGTGAAAAATGCTCTATCGCTTGCAATGTCTCGGGATG
GTAGTTCCGGTGGGGTTATTCGGTTAGTGATTATTGACAAACAGGGCGCC
ACAAGAGAATTTCATCCTGGAAACAAACTACCAGAGTTTTGGCAGGGGTA
A