Gchil7322.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7322.t1
Unique NameGchil7322.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length185
Homology
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BLAST of Gchil7322.t1 vs. uniprot
Match: A0A2V3IGD6_9FLOR (Spindle pole body component n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGD6_9FLOR)

HSP 1 Score: 216 bits (549), Expect = 5.570e-64
Identity = 119/188 (63.30%), Postives = 138/188 (73.40%), Query Frame = 0 
Query:    1 MPARSSLRKVATALVRLFALRNSMLPFFRKILYYAVAYVIEPNKMQFENAMRKAQTTDAIMVHHAHFLGH-VGRTMLIAERGSW---ALGEICISFTSHTDSFETLVRVCEDNDVVQSHLKERSYPATLAKIETSFDFHLGKFMEGLSALSKSRANVHLANLCERLHGGEYYSLWKEQSSASFHKLQI 184
            M A+ SLRK+A +LVR FALRN ML F R +LYY VA VIEPN  Q E+AM KAQT D IMVHHA FL   V +++L  ER      ALGE C +F ++T+ FETL+R  +D DVVQ  LKER YP TLAK ETSFD HLGK M+GLSA+SK RAN HLANLCERL GG+YYS +KE+S ASF  LQI
Sbjct:  401 MRAKGSLRKIANSLVRSFALRNRMLHFVRNMLYYTVADVIEPNWRQLESAMNKAQTIDEIMVHHARFLDMCVTQSLLSNERHVQVLRALGETCTAFAAYTEGFETLIRASKDADVVQDRLKERLYPGTLAKFETSFDLHLGKLMDGLSAVSKKRANFHLANLCERLDGGDYYSRFKERSLASFGNLQI 588
The following BLAST results are available for this feature:
BLAST of Gchil7322.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IGD6_9FLOR5.570e-6463.30Spindle pole body component n=1 Tax=Gracilariopsis... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR042241Gamma-tubulin complex component, C-terminal domain superfamilyGENE3D1.20.120.1900coord: 2..167
e-value: 9.7E-18
score: 66.4
IPR040457Gamma tubulin complex component, C-terminalPFAMPF04130GCP_C_terminalcoord: 12..168
e-value: 1.9E-16
score: 60.4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 21..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..184
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:203932..204486 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7322.t1Gchil7322.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 203932..204486 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7322.t1 ID=Gchil7322.t1|Name=Gchil7322.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=185bp
MPARSSLRKVATALVRLFALRNSMLPFFRKILYYAVAYVIEPNKMQFENA
MRKAQTTDAIMVHHAHFLGHVGRTMLIAERGSWALGEICISFTSHTDSFE
TLVRVCEDNDVVQSHLKERSYPATLAKIETSFDFHLGKFMEGLSALSKSR
ANVHLANLCERLHGGEYYSLWKEQSSASFHKLQI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042241GCP_C_sf
IPR040457GCP_C