Gchil575.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil575.t1
Unique Name	Gchil575.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	304

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:371174..372085 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_143542
PFAMs	Sulfotransfer_1
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00007,RC00128
KEGG ko	ko:K01014
KEGG Reaction	R01242
KEGG Pathway	ko05204,map05204
Evalue	9.88e-18
EggNOG OGs	KOG1584@1\|root,KOG1584@2759\|Eukaryota
EC	2.8.2.1
Description	sulfotransferase activity
COG category	S
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil575	Gchil575	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 371174..372085 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil575.t1.start1	Gchil575.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 371174..371176 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil575.t1.CDS1	Gchil575.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 371174..372085 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil575.t1.exon1	Gchil575.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 371174..372085 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil575.t1.stop1	Gchil575.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 372083..372085 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil575.t1	Gchil575.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 371174..372085 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:371174..372085+
coding sequence from alignment at tig00004380_pilon:371174..372085+

mRNA sequence

>Gchil575.t1 ID=Gchil575.t1|Name=Gchil575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=304bp
MAEADQLVDALMQRLDATTVQFPSFEKPLKLEAVVSTPMKSGTTLMQQML
YQMMAVTGRVQSDPNGELYDDISEVEPFLDARDATGIKESIQPYEPMCWK
SHADASHFQGWDTKCLYCVRNPISATRGLLDFVYDWMLDDPPESPRLLEN
VYAKFVEHNLLSDPDMQIADWFVHTKSWVEFDANVLFLVFEDVVRDISGT
ARRVARFLDIDLDDEQVGIISRKCDRSVMAKDERFNDTSISKLMGWKQCG
GRRVRAEGDGLFKPIALDSAVERKVWKKFESVFGMKSYDELVADLRKRNS
FVV*

spliced messenger RNA

>Gchil575.t1 ID=Gchil575.t1|Name=Gchil575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00004380_pilon:371174..372085+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGAAGCAGATCAATTAGTAGACGCCTTGATGCAGAGGCTTGATGC
AACTACGGTGCAGTTCCCATCTTTTGAAAAACCGTTAAAGCTTGAGGCTG
TGGTAAGCACGCCAATGAAATCTGGAACAACTTTGATGCAGCAAATGCTG
TATCAGATGATGGCCGTGACCGGGAGAGTGCAATCGGATCCAAACGGTGA
GCTGTATGATGATATTAGTGAAGTAGAGCCATTCTTGGATGCTCGCGACG
CCACCGGTATAAAGGAATCCATACAACCGTATGAACCAATGTGTTGGAAG
TCTCATGCAGACGCCTCTCACTTTCAGGGATGGGATACGAAATGCCTGTA
CTGTGTTCGAAACCCCATTAGTGCTACGAGGGGTTTACTGGATTTTGTGT
ACGATTGGATGTTAGACGACCCTCCGGAGTCACCACGCTTGTTGGAGAAT
GTATACGCAAAATTTGTGGAGCACAATTTGCTGAGTGACCCAGACATGCA
GATAGCAGACTGGTTTGTTCACACCAAATCGTGGGTAGAATTCGACGCGA
ACGTACTCTTTCTAGTTTTCGAGGACGTTGTAAGAGACATCAGCGGCACC
GCTCGACGCGTAGCTCGTTTCCTCGACATTGACCTCGATGACGAACAAGT
AGGAATCATTTCTAGAAAATGCGATAGGAGTGTTATGGCAAAGGACGAGC
GATTCAATGATACGTCAATCTCGAAATTGATGGGATGGAAGCAATGCGGA
GGAAGAAGGGTCCGAGCTGAGGGAGACGGCCTGTTCAAACCTATTGCATT
GGATTCTGCCGTGGAACGAAAAGTGTGGAAGAAATTCGAATCGGTGTTCG
GAATGAAAAGCTACGATGAATTGGTCGCTGACCTACGAAAAAGAAATTCT
TTCGTCGTCTAG

protein sequence of Gchil575.t1

>Gchil575.t1 ID=Gchil575.t1|Name=Gchil575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=304bp
MAEADQLVDALMQRLDATTVQFPSFEKPLKLEAVVSTPMKSGTTLMQQML
YQMMAVTGRVQSDPNGELYDDISEVEPFLDARDATGIKESIQPYEPMCWK
SHADASHFQGWDTKCLYCVRNPISATRGLLDFVYDWMLDDPPESPRLLEN
VYAKFVEHNLLSDPDMQIADWFVHTKSWVEFDANVLFLVFEDVVRDISGT
ARRVARFLDIDLDDEQVGIISRKCDRSVMAKDERFNDTSISKLMGWKQCG
GRRVRAEGDGLFKPIALDSAVERKVWKKFESVFGMKSYDELVADLRKRNS
FVV*

mRNA from alignment at tig00004380_pilon:371174..372085+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil575.t1 ID=Gchil575.t1|Name=Gchil575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=912bp|location=Sequence derived from alignment at tig00004380_pilon:371174..372085+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGAAGCAGATCAATTAGTAGACGCCTTGATGCAGAGGCTTGATGC
AACTACGGTGCAGTTCCCATCTTTTGAAAAACCGTTAAAGCTTGAGGCTG
TGGTAAGCACGCCAATGAAATCTGGAACAACTTTGATGCAGCAAATGCTG
TATCAGATGATGGCCGTGACCGGGAGAGTGCAATCGGATCCAAACGGTGA
GCTGTATGATGATATTAGTGAAGTAGAGCCATTCTTGGATGCTCGCGACG
CCACCGGTATAAAGGAATCCATACAACCGTATGAACCAATGTGTTGGAAG
TCTCATGCAGACGCCTCTCACTTTCAGGGATGGGATACGAAATGCCTGTA
CTGTGTTCGAAACCCCATTAGTGCTACGAGGGGTTTACTGGATTTTGTGT
ACGATTGGATGTTAGACGACCCTCCGGAGTCACCACGCTTGTTGGAGAAT
GTATACGCAAAATTTGTGGAGCACAATTTGCTGAGTGACCCAGACATGCA
GATAGCAGACTGGTTTGTTCACACCAAATCGTGGGTAGAATTCGACGCGA
ACGTACTCTTTCTAGTTTTCGAGGACGTTGTAAGAGACATCAGCGGCACC
GCTCGACGCGTAGCTCGTTTCCTCGACATTGACCTCGATGACGAACAAGT
AGGAATCATTTCTAGAAAATGCGATAGGAGTGTTATGGCAAAGGACGAGC
GATTCAATGATACGTCAATCTCGAAATTGATGGGATGGAAGCAATGCGGA
GGAAGAAGGGTCCGAGCTGAGGGAGACGGCCTGTTCAAACCTATTGCATT
GGATTCTGCCGTGGAACGAAAAGTGTGGAAGAAATTCGAATCGGTGTTCG
GAATGAAAAGCTACGATGAATTGGTCGCTGACCTACGAAAAAGAAATTCT
TTCGTCGTCTAG

Coding sequence (CDS) from alignment at tig00004380_pilon:371174..372085+

>Gchil575.t1 ID=Gchil575.t1|Name=Gchil575.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=912bp|location=Sequence derived from alignment at tig00004380_pilon:371174..372085+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCAGAAGCAGATCAATTAGTAGACGCCTTGATGCAGAGGCTTGATGC
AACTACGGTGCAGTTCCCATCTTTTGAAAAACCGTTAAAGCTTGAGGCTG
TGGTAAGCACGCCAATGAAATCTGGAACAACTTTGATGCAGCAAATGCTG
TATCAGATGATGGCCGTGACCGGGAGAGTGCAATCGGATCCAAACGGTGA
GCTGTATGATGATATTAGTGAAGTAGAGCCATTCTTGGATGCTCGCGACG
CCACCGGTATAAAGGAATCCATACAACCGTATGAACCAATGTGTTGGAAG
TCTCATGCAGACGCCTCTCACTTTCAGGGATGGGATACGAAATGCCTGTA
CTGTGTTCGAAACCCCATTAGTGCTACGAGGGGTTTACTGGATTTTGTGT
ACGATTGGATGTTAGACGACCCTCCGGAGTCACCACGCTTGTTGGAGAAT
GTATACGCAAAATTTGTGGAGCACAATTTGCTGAGTGACCCAGACATGCA
GATAGCAGACTGGTTTGTTCACACCAAATCGTGGGTAGAATTCGACGCGA
ACGTACTCTTTCTAGTTTTCGAGGACGTTGTAAGAGACATCAGCGGCACC
GCTCGACGCGTAGCTCGTTTCCTCGACATTGACCTCGATGACGAACAAGT
AGGAATCATTTCTAGAAAATGCGATAGGAGTGTTATGGCAAAGGACGAGC
GATTCAATGATACGTCAATCTCGAAATTGATGGGATGGAAGCAATGCGGA
GGAAGAAGGGTCCGAGCTGAGGGAGACGGCCTGTTCAAACCTATTGCATT
GGATTCTGCCGTGGAACGAAAAGTGTGGAAGAAATTCGAATCGGTGTTCG
GAATGAAAAGCTACGATGAATTGGTCGCTGACCTACGAAAAAGAAATTCT
TTCGTCGTCTAG