Gchil563.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil563.t1
Unique Name	Gchil563.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	364

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004380_pilon	contig	tig00004380_pilon:221873..222964 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5888.CAK94768
PFAMs	Zip
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14709
KEGG TC	2.A.5.1,2.A.5.3,2.A.5.6
Evalue	4.66e-19
EggNOG OGs	KOG1558@1\|root,KOG1558@2759\|Eukaryota,3ZCW6@5878\|Ciliophora
Description	ZIP Zinc transporter family protein
COG category	P
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil563	Gchil563	Gracilaria chilensis NLEC103_M9 male	gene	tig00004380_pilon 221873..222964 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil563.t1.start1	Gchil563.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004380_pilon 221873..221875 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil563.t1.CDS1	Gchil563.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004380_pilon 221873..222964 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil563.t1.exon1	Gchil563.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004380_pilon 221873..222964 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil563.t1.stop1	Gchil563.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004380_pilon 222962..222964 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil563.t1	Gchil563.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004380_pilon 221873..222964 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004380_pilon:221873..222964+
coding sequence from alignment at tig00004380_pilon:221873..222964+

mRNA sequence

>Gchil563.t1 ID=Gchil563.t1|Name=Gchil563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=364bp
MQSSSLSFSSAFAALPPTPEALTTVVRQVCESSCLRSWKIGFAAILLAEG
LLFAHIVYFAKRVSGGAGSRFLATIRIGNAFSAGIFLATGFLHVLPEAVE
LLSGEDSHDAHARLLRKSVRLLSQFVREDDDHHEGEGHEEHEDEEGHSEL
FPWAYLITVLTFYLIFFVEKILIPKLLPSPSTHDAHVKDLEQHSEEGHQI
SSSKYSQGFGSRAFIQGLVEVIAISLHSLFESMALGLSSSFDVMLNIFIA
TAAHRWATSAALSFKLVRDLRYVPFLVLMTLFSAAVPVGIAIGAVLSSLS
ATVQGVLFSLSAGTFLYIGGFELMAEEFVEQKGWMLRKFLFTLTGAAIIT
VITVVLSVTGVHG*

spliced messenger RNA

>Gchil563.t1 ID=Gchil563.t1|Name=Gchil563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00004380_pilon:221873..222964+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTCTTCCTCCCTTTCCTTCTCATCGGCTTTCGCTGCCCTGCCGCC
CACCCCGGAAGCCCTTACCACCGTCGTTCGACAGGTATGTGAGAGCAGCT
GCTTGCGATCCTGGAAGATCGGATTTGCTGCTATTCTGTTGGCAGAAGGG
CTCCTATTTGCCCACATCGTCTACTTCGCCAAGAGAGTGTCAGGTGGTGC
TGGTTCGCGCTTCTTGGCCACAATTCGCATTGGAAATGCTTTTTCGGCCG
GCATCTTTCTTGCCACAGGATTTCTGCACGTTCTGCCTGAAGCCGTTGAG
CTTTTAAGTGGTGAAGACTCCCATGACGCACATGCACGCCTGCTTCGAAA
ATCTGTTCGACTCCTTTCTCAATTCGTCAGAGAGGACGACGACCACCACG
AGGGTGAGGGCCATGAAGAGCATGAAGATGAAGAAGGGCATTCAGAATTG
TTTCCATGGGCATATCTCATCACTGTGCTTACCTTTTACCTAATCTTCTT
CGTCGAAAAGATTCTGATTCCTAAACTGTTGCCATCGCCCTCCACTCACG
ACGCACACGTCAAGGACCTTGAGCAGCATAGCGAAGAAGGGCACCAGATT
TCGTCCTCAAAGTACTCACAAGGATTTGGGTCTAGAGCGTTTATCCAGGG
CCTGGTTGAAGTGATCGCCATTTCACTGCATTCCCTTTTCGAATCGATGG
CTTTGGGCCTGTCCTCGTCGTTTGACGTCATGCTGAACATCTTTATTGCC
ACCGCCGCACACAGATGGGCCACAAGCGCTGCCCTGTCGTTCAAACTTGT
GCGAGATTTACGTTACGTTCCATTCTTAGTGTTGATGACGCTCTTTTCGG
CTGCAGTACCTGTTGGAATTGCCATTGGAGCGGTTCTGTCCAGTTTGTCT
GCCACCGTACAGGGAGTTTTGTTCTCACTTTCTGCAGGAACTTTTCTTTA
CATCGGAGGGTTTGAGTTAATGGCGGAAGAATTTGTTGAGCAAAAAGGGT
GGATGTTGCGCAAGTTCCTCTTCACTTTAACAGGAGCCGCCATCATCACC
GTGATCACCGTGGTGCTCAGCGTGACAGGAGTGCATGGCTAA

protein sequence of Gchil563.t1

>Gchil563.t1 ID=Gchil563.t1|Name=Gchil563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=364bp
MQSSSLSFSSAFAALPPTPEALTTVVRQVCESSCLRSWKIGFAAILLAEG
LLFAHIVYFAKRVSGGAGSRFLATIRIGNAFSAGIFLATGFLHVLPEAVE
LLSGEDSHDAHARLLRKSVRLLSQFVREDDDHHEGEGHEEHEDEEGHSEL
FPWAYLITVLTFYLIFFVEKILIPKLLPSPSTHDAHVKDLEQHSEEGHQI
SSSKYSQGFGSRAFIQGLVEVIAISLHSLFESMALGLSSSFDVMLNIFIA
TAAHRWATSAALSFKLVRDLRYVPFLVLMTLFSAAVPVGIAIGAVLSSLS
ATVQGVLFSLSAGTFLYIGGFELMAEEFVEQKGWMLRKFLFTLTGAAIIT
VITVVLSVTGVHG*

mRNA from alignment at tig00004380_pilon:221873..222964+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil563.t1 ID=Gchil563.t1|Name=Gchil563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00004380_pilon:221873..222964+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGTCTTCCTCCCTTTCCTTCTCATCGGCTTTCGCTGCCCTGCCGCC
CACCCCGGAAGCCCTTACCACCGTCGTTCGACAGGTATGTGAGAGCAGCT
GCTTGCGATCCTGGAAGATCGGATTTGCTGCTATTCTGTTGGCAGAAGGG
CTCCTATTTGCCCACATCGTCTACTTCGCCAAGAGAGTGTCAGGTGGTGC
TGGTTCGCGCTTCTTGGCCACAATTCGCATTGGAAATGCTTTTTCGGCCG
GCATCTTTCTTGCCACAGGATTTCTGCACGTTCTGCCTGAAGCCGTTGAG
CTTTTAAGTGGTGAAGACTCCCATGACGCACATGCACGCCTGCTTCGAAA
ATCTGTTCGACTCCTTTCTCAATTCGTCAGAGAGGACGACGACCACCACG
AGGGTGAGGGCCATGAAGAGCATGAAGATGAAGAAGGGCATTCAGAATTG
TTTCCATGGGCATATCTCATCACTGTGCTTACCTTTTACCTAATCTTCTT
CGTCGAAAAGATTCTGATTCCTAAACTGTTGCCATCGCCCTCCACTCACG
ACGCACACGTCAAGGACCTTGAGCAGCATAGCGAAGAAGGGCACCAGATT
TCGTCCTCAAAGTACTCACAAGGATTTGGGTCTAGAGCGTTTATCCAGGG
CCTGGTTGAAGTGATCGCCATTTCACTGCATTCCCTTTTCGAATCGATGG
CTTTGGGCCTGTCCTCGTCGTTTGACGTCATGCTGAACATCTTTATTGCC
ACCGCCGCACACAGATGGGCCACAAGCGCTGCCCTGTCGTTCAAACTTGT
GCGAGATTTACGTTACGTTCCATTCTTAGTGTTGATGACGCTCTTTTCGG
CTGCAGTACCTGTTGGAATTGCCATTGGAGCGGTTCTGTCCAGTTTGTCT
GCCACCGTACAGGGAGTTTTGTTCTCACTTTCTGCAGGAACTTTTCTTTA
CATCGGAGGGTTTGAGTTAATGGCGGAAGAATTTGTTGAGCAAAAAGGGT
GGATGTTGCGCAAGTTCCTCTTCACTTTAACAGGAGCCGCCATCATCACC
GTGATCACCGTGGTGCTCAGCGTGACAGGAGTGCATGGCTAA

Coding sequence (CDS) from alignment at tig00004380_pilon:221873..222964+

>Gchil563.t1 ID=Gchil563.t1|Name=Gchil563.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00004380_pilon:221873..222964+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGTCTTCCTCCCTTTCCTTCTCATCGGCTTTCGCTGCCCTGCCGCC
CACCCCGGAAGCCCTTACCACCGTCGTTCGACAGGTATGTGAGAGCAGCT
GCTTGCGATCCTGGAAGATCGGATTTGCTGCTATTCTGTTGGCAGAAGGG
CTCCTATTTGCCCACATCGTCTACTTCGCCAAGAGAGTGTCAGGTGGTGC
TGGTTCGCGCTTCTTGGCCACAATTCGCATTGGAAATGCTTTTTCGGCCG
GCATCTTTCTTGCCACAGGATTTCTGCACGTTCTGCCTGAAGCCGTTGAG
CTTTTAAGTGGTGAAGACTCCCATGACGCACATGCACGCCTGCTTCGAAA
ATCTGTTCGACTCCTTTCTCAATTCGTCAGAGAGGACGACGACCACCACG
AGGGTGAGGGCCATGAAGAGCATGAAGATGAAGAAGGGCATTCAGAATTG
TTTCCATGGGCATATCTCATCACTGTGCTTACCTTTTACCTAATCTTCTT
CGTCGAAAAGATTCTGATTCCTAAACTGTTGCCATCGCCCTCCACTCACG
ACGCACACGTCAAGGACCTTGAGCAGCATAGCGAAGAAGGGCACCAGATT
TCGTCCTCAAAGTACTCACAAGGATTTGGGTCTAGAGCGTTTATCCAGGG
CCTGGTTGAAGTGATCGCCATTTCACTGCATTCCCTTTTCGAATCGATGG
CTTTGGGCCTGTCCTCGTCGTTTGACGTCATGCTGAACATCTTTATTGCC
ACCGCCGCACACAGATGGGCCACAAGCGCTGCCCTGTCGTTCAAACTTGT
GCGAGATTTACGTTACGTTCCATTCTTAGTGTTGATGACGCTCTTTTCGG
CTGCAGTACCTGTTGGAATTGCCATTGGAGCGGTTCTGTCCAGTTTGTCT
GCCACCGTACAGGGAGTTTTGTTCTCACTTTCTGCAGGAACTTTTCTTTA
CATCGGAGGGTTTGAGTTAATGGCGGAAGAATTTGTTGAGCAAAAAGGGT
GGATGTTGCGCAAGTTCCTCTTCACTTTAACAGGAGCCGCCATCATCACC
GTGATCACCGTGGTGCTCAGCGTGACAGGAGTGCATGGCTAA