Gchil3476.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3476.t1
Unique Name	Gchil3476.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	670

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:418981..420990 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703818.1
Preferred name	SDH3-1
PFAMs	HSP70,Sdh_cyt
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00045
KEGG ko	ko:K00236,ko:K04043
KEGG TC	1.A.33.1
KEGG Reaction	R02164
KEGG Pathway	ko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko03018,ko04212,ko04714,ko04932,ko05010,ko05012,ko05016,ko05152,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map03018,map04212,map04714,map04932,map05010,map05012,map05016,map05152
KEGG Module	M00009,M00011,M00148
GOs	GO:0000166,GO:0000988,GO:0000989,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0006457,GO:0006458,GO:0006950,GO:0006970,GO:0006986,GO:0008144,GO:0008150,GO:0008270,GO:0009266,GO:0009408,GO:0009507,GO:0009536,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009651,GO:0009719,GO:0009725,GO:0009735,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010556,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016989,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0030312,GO:0030554,GO:0031090,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034620,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043531,GO:0043933,GO:0044085,GO:0044183,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045273,GO:0046686,GO:0046872,GO:0046914,GO:0050789,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051171,GO:0051252,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061077,GO:0065003,GO:0065007,GO:0070469,GO:0070887,GO:0071310,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0098588,GO:0098796,GO:0098803,GO:0098805,GO:0140110,GO:1901265,GO:1901363,GO:1903506,GO:2001141
Evalue	0.0
EggNOG OGs	COG0443@1\|root,KOG0102@2759\|Eukaryota
Description	unfolded protein binding
COG category	O
BRITE	ko00000,ko00001,ko00002,ko03019,ko03029,ko03110,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3476	Gchil3476	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 418981..420990 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3476.t1.start1	Gchil3476.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 418981..418983 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3476.t1.CDS1	Gchil3476.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 418981..420990 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3476.t1.exon1	Gchil3476.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 418981..420990 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3476.t1.stop1	Gchil3476.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 420988..420990 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3476.t1	Gchil3476.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 418981..420990 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:418981..420990+
coding sequence from alignment at tig00004378_pilon:418981..420990+

mRNA sequence

>Gchil3476.t1 ID=Gchil3476.t1|Name=Gchil3476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=670bp
MRALTRFGVALRRATVSQRRGLSSAISGDVIGIDLGTTNSCVSVMEGKTP
RVIENAEGVRTTPSVVAFTQDGEKLVGIPARRQAVTNPTNTLFATKRLIG
RRYSDKESQADVSAMPYKIIPGPNGDAWVEAGGQKYSPSQVGAFVLQKMK
ETAESFLGRKVNHAVITVPAYFNDSQRQATKDAGKIAGLDVARIINEPTA
AALAYGLEKADGKIVAVYDLGGGTFDVSILEISGGVFEVKATNGDTHLGG
EDFDNVLLDNLVSEFKKDQGIDLSKDRLALQRLREAAEKAKIELSSTMQT
DINLPFITADASGPKHMNMKLTRAKYESLVDPLVRRTLDPMKNCLKDAGV
SKKEIGEVLMVGGMTRVPRVQEVVKDFFGRDPSKSVNPDEVVAMGAAVQG
GVLRGDVKDILLLDVTPLSLGLETLGGVFTRLINRNTTIPTKKSQVFSTA
ADNQTQVGIKVLQGEREMAVDNKMLGQFDLVGIPPAPRGVPQIDVVFDID
ANGILHVSARDKATSKEQSIRIQSSGGLSDGDIDEMVKNAESFAAADKER
RESIEAKNDADSLLYSTEKSFNEHKDKLNAEQIADVEAAMTDLRSELDNE
GASASDIKAKTEALSKAAMSIGEAMYKASQEANAQRDSASESSSTTEGDP
KSESDSDKEPEKDKKAGGA*

spliced messenger RNA

>Gchil3476.t1 ID=Gchil3476.t1|Name=Gchil3476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at tig00004378_pilon:418981..420990+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCCTTAACTCGCTTCGGCGTCGCGCTTCGGCGCGCCACCGTGTC
GCAGCGAAGGGGATTGTCCTCTGCCATCTCTGGCGATGTCATCGGCATTG
ATCTCGGCACCACCAATTCCTGCGTTTCTGTCATGGAAGGCAAGACCCCG
CGTGTCATCGAGAACGCAGAGGGAGTGAGAACCACCCCCTCAGTGGTCGC
CTTTACGCAGGATGGCGAGAAACTCGTTGGCATCCCCGCACGCCGCCAAG
CAGTTACAAATCCTACCAACACCCTTTTTGCCACCAAGAGACTCATCGGT
CGCCGCTACTCTGACAAAGAGTCCCAGGCCGACGTGTCTGCCATGCCGTA
CAAGATTATTCCCGGTCCGAACGGCGATGCTTGGGTCGAGGCCGGCGGTC
AGAAATACTCTCCGAGCCAGGTCGGAGCCTTTGTCTTGCAaaagatgaag
gaaaccgctgagagcttcttgggacggaaggtcaatcatgccgtcatcac
tgtcccggcctatttcaatgactctcagagacaggccactaaggacgctg
gtaagattgcGGGCTTGGATGTTGCTCGAATCATTAACGAGCCTACCGCC
GCTGCACTAGCGTACGGCTTGGAGAAGGCTGATGGAAAAATCGTCGCCGT
CTATGACCTTGGCGGCGGTACCTTTGATGTCAGTATCCTCGAGATTTCTG
GTGGTGTCTTCGAGGTCAAGGCCACCAACGGAGATACTCATCTCGGCGGT
GAAGATTTCGACAACGTCTTGCTTGACAATCTTGTCTCCGAGTTCAAGAA
GGATCAGGGTATCGATCTTTCAAAGGACCGTCTCGCTCTGCAACGATTGC
GTGAAGCAGCTGAAAAGGCCAAGATTGAGCTTTCTTCTACCATGCAAACC
GATATAAACCTTCCCTTCATTACGGCCGATGCAAGTGGACCAAAGCACAT
GAACATGAAGCTCACACGCGCCAAATACGAGTCACTTGTCGACCCGCTCG
TCAGACGTACCTTGGACCCCATGAAAAACTGCCTCAAAGACGCTGGTGTT
TCCAAAAAAGAAATCGGCGAGGTTCTCATGGTGGGAGGTATGACTCGCGT
GCCGCGCGTACAGGAGGTAGTGAAAGACTTCTTTGGAAGAGATCCATCAA
AGAGCGTGAACCCTGATGAGGTTGTTGCGATGGGCGCCGCCGTTCAGGGT
GGTGTACTGCGAGGCGATGTGAAGGATATCCTGCTGCTTGATGTCACACC
ATTGTCTCTGGGTCTGGAAACATTAGGCGGAGTTTTCACGAGATTGATTA
ACAGGAACACCACTATTCCCACCAAGAAGTCACAAGTGTTCTCGACTGCC
GCGGACAATCAAACCCAGGTCGGTATCAAGGTTCTCCAAGGCGAGCGAGA
AATGGCTGTTGACAACAAGATGTTGGGTCAGTTCGATCTCGTAGGTATTC
CACCGGCACCAAGAGGCGTACCGCAAATTGATGTCGTCTTTGATATTGAT
GCAAATGGTATTCTTCACGTCTCCGCACGTGACAAGGCTACTAGCAAAGA
ACAAAGTATTCGAATCCAAAGCTCTGGCGGCTTGTCGGATGGCGACATCG
ATGAAATGGTTAAGAACGCTGAATCCTTCGCTGCTGCCGATAAGGAACGC
CGCGAGTCCATTGAGGCGAAAAATGATGCGGACAGTTTGTTGTACAGCAC
TGAAAAGAGCTTCAATGAACACAAGGATAAGTTGAACGCGGAACAGATTG
CCGATGTCGAAGCTGCGATGACGGATTTGCGCTCAGAACTTGACAATGAA
GGCGCAAGTGCTTCAGACATCAAGGCGAAAACAGAGGCATTGTCTAAGGC
TGCCATGTCAATAGGGGAAGCAATGTATAAGGCTTCCCAGGAAGCGAATG
CGCAGAGAGATTCTGCTTCGGAGTCGTCCTCAACAACAGAGGGAGATCCC
AAATCTGAGAGTGACTCGGACAAGGAGCCTGAAAAGGACAAGAAGGCTGG
CGGCGCGTAA

protein sequence of Gchil3476.t1

>Gchil3476.t1 ID=Gchil3476.t1|Name=Gchil3476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=670bp
MRALTRFGVALRRATVSQRRGLSSAISGDVIGIDLGTTNSCVSVMEGKTP
RVIENAEGVRTTPSVVAFTQDGEKLVGIPARRQAVTNPTNTLFATKRLIG
RRYSDKESQADVSAMPYKIIPGPNGDAWVEAGGQKYSPSQVGAFVLQKMK
ETAESFLGRKVNHAVITVPAYFNDSQRQATKDAGKIAGLDVARIINEPTA
AALAYGLEKADGKIVAVYDLGGGTFDVSILEISGGVFEVKATNGDTHLGG
EDFDNVLLDNLVSEFKKDQGIDLSKDRLALQRLREAAEKAKIELSSTMQT
DINLPFITADASGPKHMNMKLTRAKYESLVDPLVRRTLDPMKNCLKDAGV
SKKEIGEVLMVGGMTRVPRVQEVVKDFFGRDPSKSVNPDEVVAMGAAVQG
GVLRGDVKDILLLDVTPLSLGLETLGGVFTRLINRNTTIPTKKSQVFSTA
ADNQTQVGIKVLQGEREMAVDNKMLGQFDLVGIPPAPRGVPQIDVVFDID
ANGILHVSARDKATSKEQSIRIQSSGGLSDGDIDEMVKNAESFAAADKER
RESIEAKNDADSLLYSTEKSFNEHKDKLNAEQIADVEAAMTDLRSELDNE
GASASDIKAKTEALSKAAMSIGEAMYKASQEANAQRDSASESSSTTEGDP
KSESDSDKEPEKDKKAGGA*

mRNA from alignment at tig00004378_pilon:418981..420990+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3476.t1 ID=Gchil3476.t1|Name=Gchil3476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2010bp|location=Sequence derived from alignment at tig00004378_pilon:418981..420990+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGCCTTAACTCGCTTCGGCGTCGCGCTTCGGCGCGCCACCGTGTC
GCAGCGAAGGGGATTGTCCTCTGCCATCTCTGGCGATGTCATCGGCATTG
ATCTCGGCACCACCAATTCCTGCGTTTCTGTCATGGAAGGCAAGACCCCG
CGTGTCATCGAGAACGCAGAGGGAGTGAGAACCACCCCCTCAGTGGTCGC
CTTTACGCAGGATGGCGAGAAACTCGTTGGCATCCCCGCACGCCGCCAAG
CAGTTACAAATCCTACCAACACCCTTTTTGCCACCAAGAGACTCATCGGT
CGCCGCTACTCTGACAAAGAGTCCCAGGCCGACGTGTCTGCCATGCCGTA
CAAGATTATTCCCGGTCCGAACGGCGATGCTTGGGTCGAGGCCGGCGGTC
AGAAATACTCTCCGAGCCAGGTCGGAGCCTTTGTCTTGCAaaagatgaag
gaaaccgctgagagcttcttgggacggaaggtcaatcatgccgtcatcac
tgtcccggcctatttcaatgactctcagagacaggccactaaggacgctg
gtaagattgcGGGCTTGGATGTTGCTCGAATCATTAACGAGCCTACCGCC
GCTGCACTAGCGTACGGCTTGGAGAAGGCTGATGGAAAAATCGTCGCCGT
CTATGACCTTGGCGGCGGTACCTTTGATGTCAGTATCCTCGAGATTTCTG
GTGGTGTCTTCGAGGTCAAGGCCACCAACGGAGATACTCATCTCGGCGGT
GAAGATTTCGACAACGTCTTGCTTGACAATCTTGTCTCCGAGTTCAAGAA
GGATCAGGGTATCGATCTTTCAAAGGACCGTCTCGCTCTGCAACGATTGC
GTGAAGCAGCTGAAAAGGCCAAGATTGAGCTTTCTTCTACCATGCAAACC
GATATAAACCTTCCCTTCATTACGGCCGATGCAAGTGGACCAAAGCACAT
GAACATGAAGCTCACACGCGCCAAATACGAGTCACTTGTCGACCCGCTCG
TCAGACGTACCTTGGACCCCATGAAAAACTGCCTCAAAGACGCTGGTGTT
TCCAAAAAAGAAATCGGCGAGGTTCTCATGGTGGGAGGTATGACTCGCGT
GCCGCGCGTACAGGAGGTAGTGAAAGACTTCTTTGGAAGAGATCCATCAA
AGAGCGTGAACCCTGATGAGGTTGTTGCGATGGGCGCCGCCGTTCAGGGT
GGTGTACTGCGAGGCGATGTGAAGGATATCCTGCTGCTTGATGTCACACC
ATTGTCTCTGGGTCTGGAAACATTAGGCGGAGTTTTCACGAGATTGATTA
ACAGGAACACCACTATTCCCACCAAGAAGTCACAAGTGTTCTCGACTGCC
GCGGACAATCAAACCCAGGTCGGTATCAAGGTTCTCCAAGGCGAGCGAGA
AATGGCTGTTGACAACAAGATGTTGGGTCAGTTCGATCTCGTAGGTATTC
CACCGGCACCAAGAGGCGTACCGCAAATTGATGTCGTCTTTGATATTGAT
GCAAATGGTATTCTTCACGTCTCCGCACGTGACAAGGCTACTAGCAAAGA
ACAAAGTATTCGAATCCAAAGCTCTGGCGGCTTGTCGGATGGCGACATCG
ATGAAATGGTTAAGAACGCTGAATCCTTCGCTGCTGCCGATAAGGAACGC
CGCGAGTCCATTGAGGCGAAAAATGATGCGGACAGTTTGTTGTACAGCAC
TGAAAAGAGCTTCAATGAACACAAGGATAAGTTGAACGCGGAACAGATTG
CCGATGTCGAAGCTGCGATGACGGATTTGCGCTCAGAACTTGACAATGAA
GGCGCAAGTGCTTCAGACATCAAGGCGAAAACAGAGGCATTGTCTAAGGC
TGCCATGTCAATAGGGGAAGCAATGTATAAGGCTTCCCAGGAAGCGAATG
CGCAGAGAGATTCTGCTTCGGAGTCGTCCTCAACAACAGAGGGAGATCCC
AAATCTGAGAGTGACTCGGACAAGGAGCCTGAAAAGGACAAGAAGGCTGG
CGGCGCGTAA

Coding sequence (CDS) from alignment at tig00004378_pilon:418981..420990+

>Gchil3476.t1 ID=Gchil3476.t1|Name=Gchil3476.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2010bp|location=Sequence derived from alignment at tig00004378_pilon:418981..420990+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGCCTTAACTCGCTTCGGCGTCGCGCTTCGGCGCGCCACCGTGTC
GCAGCGAAGGGGATTGTCCTCTGCCATCTCTGGCGATGTCATCGGCATTG
ATCTCGGCACCACCAATTCCTGCGTTTCTGTCATGGAAGGCAAGACCCCG
CGTGTCATCGAGAACGCAGAGGGAGTGAGAACCACCCCCTCAGTGGTCGC
CTTTACGCAGGATGGCGAGAAACTCGTTGGCATCCCCGCACGCCGCCAAG
CAGTTACAAATCCTACCAACACCCTTTTTGCCACCAAGAGACTCATCGGT
CGCCGCTACTCTGACAAAGAGTCCCAGGCCGACGTGTCTGCCATGCCGTA
CAAGATTATTCCCGGTCCGAACGGCGATGCTTGGGTCGAGGCCGGCGGTC
AGAAATACTCTCCGAGCCAGGTCGGAGCCTTTGTCTTGCAaaagatgaag
gaaaccgctgagagcttcttgggacggaaggtcaatcatgccgtcatcac
tgtcccggcctatttcaatgactctcagagacaggccactaaggacgctg
gtaagattgcGGGCTTGGATGTTGCTCGAATCATTAACGAGCCTACCGCC
GCTGCACTAGCGTACGGCTTGGAGAAGGCTGATGGAAAAATCGTCGCCGT
CTATGACCTTGGCGGCGGTACCTTTGATGTCAGTATCCTCGAGATTTCTG
GTGGTGTCTTCGAGGTCAAGGCCACCAACGGAGATACTCATCTCGGCGGT
GAAGATTTCGACAACGTCTTGCTTGACAATCTTGTCTCCGAGTTCAAGAA
GGATCAGGGTATCGATCTTTCAAAGGACCGTCTCGCTCTGCAACGATTGC
GTGAAGCAGCTGAAAAGGCCAAGATTGAGCTTTCTTCTACCATGCAAACC
GATATAAACCTTCCCTTCATTACGGCCGATGCAAGTGGACCAAAGCACAT
GAACATGAAGCTCACACGCGCCAAATACGAGTCACTTGTCGACCCGCTCG
TCAGACGTACCTTGGACCCCATGAAAAACTGCCTCAAAGACGCTGGTGTT
TCCAAAAAAGAAATCGGCGAGGTTCTCATGGTGGGAGGTATGACTCGCGT
GCCGCGCGTACAGGAGGTAGTGAAAGACTTCTTTGGAAGAGATCCATCAA
AGAGCGTGAACCCTGATGAGGTTGTTGCGATGGGCGCCGCCGTTCAGGGT
GGTGTACTGCGAGGCGATGTGAAGGATATCCTGCTGCTTGATGTCACACC
ATTGTCTCTGGGTCTGGAAACATTAGGCGGAGTTTTCACGAGATTGATTA
ACAGGAACACCACTATTCCCACCAAGAAGTCACAAGTGTTCTCGACTGCC
GCGGACAATCAAACCCAGGTCGGTATCAAGGTTCTCCAAGGCGAGCGAGA
AATGGCTGTTGACAACAAGATGTTGGGTCAGTTCGATCTCGTAGGTATTC
CACCGGCACCAAGAGGCGTACCGCAAATTGATGTCGTCTTTGATATTGAT
GCAAATGGTATTCTTCACGTCTCCGCACGTGACAAGGCTACTAGCAAAGA
ACAAAGTATTCGAATCCAAAGCTCTGGCGGCTTGTCGGATGGCGACATCG
ATGAAATGGTTAAGAACGCTGAATCCTTCGCTGCTGCCGATAAGGAACGC
CGCGAGTCCATTGAGGCGAAAAATGATGCGGACAGTTTGTTGTACAGCAC
TGAAAAGAGCTTCAATGAACACAAGGATAAGTTGAACGCGGAACAGATTG
CCGATGTCGAAGCTGCGATGACGGATTTGCGCTCAGAACTTGACAATGAA
GGCGCAAGTGCTTCAGACATCAAGGCGAAAACAGAGGCATTGTCTAAGGC
TGCCATGTCAATAGGGGAAGCAATGTATAAGGCTTCCCAGGAAGCGAATG
CGCAGAGAGATTCTGCTTCGGAGTCGTCCTCAACAACAGAGGGAGATCCC
AAATCTGAGAGTGACTCGGACAAGGAGCCTGAAAAGGACAAGAAGGCTGG
CGGCGCGTAA