Gchil3498.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3498.t1
Unique NameGchil3498.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:579853..580866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705067.1
Preferred nameCIA1
PFAMsWD40
Max annot lvl2759|Eukaryota
GOsGO:0000166,GO:0002097,GO:0002098,GO:0003674,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015630,GO:0016043,GO:0016070,GO:0016226,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0030554,GO:0031163,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042127,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044572,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051186,GO:0051252,GO:0051604,GO:0060255,GO:0065007,GO:0071704,GO:0071817,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097361,GO:0097367,GO:0097428,GO:0106035,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1903506,GO:2000112,GO:2001141
Evalue9.82e-55
EggNOG OGsKOG0645@1|root,KOG0645@2759|Eukaryota
Descriptioniron-sulfur cluster assembly
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3498Gchil3498Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 579853..580866 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3498.t1.start1Gchil3498.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 579853..579855 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3498.t1.CDS1Gchil3498.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 579853..580866 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3498.t1.exon1Gchil3498.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 579853..580866 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3498.t1.stop1Gchil3498.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 580864..580866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3498.t1Gchil3498.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 579853..580866 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3498.t1 ID=Gchil3498.t1|Name=Gchil3498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=338bp
MTLRGHTGIVWSVTWSSSGLLASCGSDKTVRLWKIDRQRSSFQLVTVFDS
QTFLRTTRDLTFSPDGRSLAVASFDASATILELFGGKSPRFDPVVVLEGH
ESEVKSVAYSSSGGLLASCSRDRSVWLWEVGLDFDYSCIAVLHGHAGDVK
CVTWHPDCELLVSCSYDETIRVWVEDEDDWFCSEVLTGHNGTVWAVAFEG
TEMASVSSDESLIIWRRESTGDYPAFRVTARVDKLHENGILSVDWKKLIV
TGGADDSICVLRRKDETPNDPNDSQVEISKLNGGWDIVARQPRAHRGDVN
RVAWSPVEDNVLASCGDDSQVRIWLYEEGEDEIIAGR*
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spliced messenger RNA

>Gchil3498.t1 ID=Gchil3498.t1|Name=Gchil3498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00004378_pilon:579853..580866+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACTTCGCGGGCACACGGGCATTGTCTGGTCTGTGACCTGGTCATC
ATCCGGCCTACTCGCATCTTGTGGTAGCGATAAAACCGTCCGGCTCTGGA
AGATAGACCGACAAAGGTCTTCTTTCCAACTTGTTACCGTCTTCGACAGT
CAAACTTTTCTACGCACTACCCGCGATTTAACCTTTTCCCCGGATGGACG
CTCTCTGGCTGTAGCAAGTTTCGATGCGTCTGCAACCATACTCGAATTGT
TCGGTGGCAAAAGTCCCCGATTCGACCCCGTCGTGGTTCTTGAAGGTCAT
GAAAGTGAAGTAAAAAGCGTTGCTTATAGTTCTTCGGGTGGACTGTTGGC
CAGTTGTTCGCGAGATCGAAGCGTATGGCTATGGGAAGTTGGACTTGACT
TTGATTACTCTTGCATCGCTGTGTTGCACGGACATGCTGGAGATGTAAAG
TGCGTCACATGGCATCCAGATTGCGAGCTGCTTGTGTCATGTTCGTACGA
CGAAACTATACGCGTGTGGGTGGAGGACGAAGATGACTGGTTTTGCAGTG
AGGTTCTTACCGGACACAATGGCACAGTATGGGCTGTTGCGTTCGAAGGC
ACAGAGATGGCCAGTGTATCTTCAGACGAAAGTCTCATTATTTGGCGGAG
AGAAAGCACGGGTGATTACCCTGCTTTTCGTGTTACTGCGCGTGTAGATA
AATTGCATGAAAATGGTATTCTAAGCGTGGATTGGAAGAAGCTAATCGTG
ACAGGTGGCGCTGATGATAGTATCTGCGTATTGCGAAGAAAGGATGAGAC
ACCGAATGATCCCAATGATAGTCAAGTTGAAATCTCGAAGCTTAATGGCG
GGTGGGATATTGTGGCTCGGCAGCCTCGTGCTCATCGTGGAGACGTAAAC
CGCGTGGCCTGGAGCCCAGTGGAAGACAATGTTCTTGCTTCATGTGGTGA
CGACAGTCAAGTGCGTATTTGGCTGTATGAAGAGGGCGAAGATGAGATAA
TTGCAGGTAGATGA
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protein sequence of Gchil3498.t1

>Gchil3498.t1 ID=Gchil3498.t1|Name=Gchil3498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=338bp
MTLRGHTGIVWSVTWSSSGLLASCGSDKTVRLWKIDRQRSSFQLVTVFDS
QTFLRTTRDLTFSPDGRSLAVASFDASATILELFGGKSPRFDPVVVLEGH
ESEVKSVAYSSSGGLLASCSRDRSVWLWEVGLDFDYSCIAVLHGHAGDVK
CVTWHPDCELLVSCSYDETIRVWVEDEDDWFCSEVLTGHNGTVWAVAFEG
TEMASVSSDESLIIWRRESTGDYPAFRVTARVDKLHENGILSVDWKKLIV
TGGADDSICVLRRKDETPNDPNDSQVEISKLNGGWDIVARQPRAHRGDVN
RVAWSPVEDNVLASCGDDSQVRIWLYEEGEDEIIAGR*
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mRNA from alignment at tig00004378_pilon:579853..580866+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3498.t1 ID=Gchil3498.t1|Name=Gchil3498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00004378_pilon:579853..580866+ (Gracilaria chilensis NLEC103_M9 male)
ATGACACTTCGCGGGCACACGGGCATTGTCTGGTCTGTGACCTGGTCATC
ATCCGGCCTACTCGCATCTTGTGGTAGCGATAAAACCGTCCGGCTCTGGA
AGATAGACCGACAAAGGTCTTCTTTCCAACTTGTTACCGTCTTCGACAGT
CAAACTTTTCTACGCACTACCCGCGATTTAACCTTTTCCCCGGATGGACG
CTCTCTGGCTGTAGCAAGTTTCGATGCGTCTGCAACCATACTCGAATTGT
TCGGTGGCAAAAGTCCCCGATTCGACCCCGTCGTGGTTCTTGAAGGTCAT
GAAAGTGAAGTAAAAAGCGTTGCTTATAGTTCTTCGGGTGGACTGTTGGC
CAGTTGTTCGCGAGATCGAAGCGTATGGCTATGGGAAGTTGGACTTGACT
TTGATTACTCTTGCATCGCTGTGTTGCACGGACATGCTGGAGATGTAAAG
TGCGTCACATGGCATCCAGATTGCGAGCTGCTTGTGTCATGTTCGTACGA
CGAAACTATACGCGTGTGGGTGGAGGACGAAGATGACTGGTTTTGCAGTG
AGGTTCTTACCGGACACAATGGCACAGTATGGGCTGTTGCGTTCGAAGGC
ACAGAGATGGCCAGTGTATCTTCAGACGAAAGTCTCATTATTTGGCGGAG
AGAAAGCACGGGTGATTACCCTGCTTTTCGTGTTACTGCGCGTGTAGATA
AATTGCATGAAAATGGTATTCTAAGCGTGGATTGGAAGAAGCTAATCGTG
ACAGGTGGCGCTGATGATAGTATCTGCGTATTGCGAAGAAAGGATGAGAC
ACCGAATGATCCCAATGATAGTCAAGTTGAAATCTCGAAGCTTAATGGCG
GGTGGGATATTGTGGCTCGGCAGCCTCGTGCTCATCGTGGAGACGTAAAC
CGCGTGGCCTGGAGCCCAGTGGAAGACAATGTTCTTGCTTCATGTGGTGA
CGACAGTCAAGTGCGTATTTGGCTGTATGAAGAGGGCGAAGATGAGATAA
TTGCAGGTAGATGA
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Coding sequence (CDS) from alignment at tig00004378_pilon:579853..580866+

>Gchil3498.t1 ID=Gchil3498.t1|Name=Gchil3498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00004378_pilon:579853..580866+ (Gracilaria chilensis NLEC103_M9 male)
ATGACACTTCGCGGGCACACGGGCATTGTCTGGTCTGTGACCTGGTCATC
ATCCGGCCTACTCGCATCTTGTGGTAGCGATAAAACCGTCCGGCTCTGGA
AGATAGACCGACAAAGGTCTTCTTTCCAACTTGTTACCGTCTTCGACAGT
CAAACTTTTCTACGCACTACCCGCGATTTAACCTTTTCCCCGGATGGACG
CTCTCTGGCTGTAGCAAGTTTCGATGCGTCTGCAACCATACTCGAATTGT
TCGGTGGCAAAAGTCCCCGATTCGACCCCGTCGTGGTTCTTGAAGGTCAT
GAAAGTGAAGTAAAAAGCGTTGCTTATAGTTCTTCGGGTGGACTGTTGGC
CAGTTGTTCGCGAGATCGAAGCGTATGGCTATGGGAAGTTGGACTTGACT
TTGATTACTCTTGCATCGCTGTGTTGCACGGACATGCTGGAGATGTAAAG
TGCGTCACATGGCATCCAGATTGCGAGCTGCTTGTGTCATGTTCGTACGA
CGAAACTATACGCGTGTGGGTGGAGGACGAAGATGACTGGTTTTGCAGTG
AGGTTCTTACCGGACACAATGGCACAGTATGGGCTGTTGCGTTCGAAGGC
ACAGAGATGGCCAGTGTATCTTCAGACGAAAGTCTCATTATTTGGCGGAG
AGAAAGCACGGGTGATTACCCTGCTTTTCGTGTTACTGCGCGTGTAGATA
AATTGCATGAAAATGGTATTCTAAGCGTGGATTGGAAGAAGCTAATCGTG
ACAGGTGGCGCTGATGATAGTATCTGCGTATTGCGAAGAAAGGATGAGAC
ACCGAATGATCCCAATGATAGTCAAGTTGAAATCTCGAAGCTTAATGGCG
GGTGGGATATTGTGGCTCGGCAGCCTCGTGCTCATCGTGGAGACGTAAAC
CGCGTGGCCTGGAGCCCAGTGGAAGACAATGTTCTTGCTTCATGTGGTGA
CGACAGTCAAGTGCGTATTTGGCTGTATGAAGAGGGCGAAGATGAGATAA
TTGCAGGTAGATGA
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