Gchil3498.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3498.t1
Unique Name	Gchil3498.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	338

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:579853..580866 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705067.1
Preferred name	CIA1
PFAMs	WD40
Max annot lvl	2759\|Eukaryota
GOs	GO:0000166,GO:0002097,GO:0002098,GO:0003674,GO:0003700,GO:0003824,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006790,GO:0006807,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008284,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0015630,GO:0016043,GO:0016070,GO:0016226,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0019538,GO:0022607,GO:0030554,GO:0031163,GO:0031323,GO:0031326,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042127,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044572,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051186,GO:0051252,GO:0051604,GO:0060255,GO:0065007,GO:0071704,GO:0071817,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097361,GO:0097367,GO:0097428,GO:0106035,GO:0140110,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1903506,GO:2000112,GO:2001141
Evalue	9.82e-55
EggNOG OGs	KOG0645@1\|root,KOG0645@2759\|Eukaryota
Description	iron-sulfur cluster assembly
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3498	Gchil3498	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 579853..580866 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3498.t1.start1	Gchil3498.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 579853..579855 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3498.t1.CDS1	Gchil3498.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 579853..580866 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3498.t1.exon1	Gchil3498.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 579853..580866 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3498.t1.stop1	Gchil3498.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 580864..580866 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3498.t1	Gchil3498.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 579853..580866 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:579853..580866+
coding sequence from alignment at tig00004378_pilon:579853..580866+

mRNA sequence

>Gchil3498.t1 ID=Gchil3498.t1|Name=Gchil3498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=338bp
MTLRGHTGIVWSVTWSSSGLLASCGSDKTVRLWKIDRQRSSFQLVTVFDS
QTFLRTTRDLTFSPDGRSLAVASFDASATILELFGGKSPRFDPVVVLEGH
ESEVKSVAYSSSGGLLASCSRDRSVWLWEVGLDFDYSCIAVLHGHAGDVK
CVTWHPDCELLVSCSYDETIRVWVEDEDDWFCSEVLTGHNGTVWAVAFEG
TEMASVSSDESLIIWRRESTGDYPAFRVTARVDKLHENGILSVDWKKLIV
TGGADDSICVLRRKDETPNDPNDSQVEISKLNGGWDIVARQPRAHRGDVN
RVAWSPVEDNVLASCGDDSQVRIWLYEEGEDEIIAGR*

spliced messenger RNA

>Gchil3498.t1 ID=Gchil3498.t1|Name=Gchil3498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00004378_pilon:579853..580866+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACACTTCGCGGGCACACGGGCATTGTCTGGTCTGTGACCTGGTCATC
ATCCGGCCTACTCGCATCTTGTGGTAGCGATAAAACCGTCCGGCTCTGGA
AGATAGACCGACAAAGGTCTTCTTTCCAACTTGTTACCGTCTTCGACAGT
CAAACTTTTCTACGCACTACCCGCGATTTAACCTTTTCCCCGGATGGACG
CTCTCTGGCTGTAGCAAGTTTCGATGCGTCTGCAACCATACTCGAATTGT
TCGGTGGCAAAAGTCCCCGATTCGACCCCGTCGTGGTTCTTGAAGGTCAT
GAAAGTGAAGTAAAAAGCGTTGCTTATAGTTCTTCGGGTGGACTGTTGGC
CAGTTGTTCGCGAGATCGAAGCGTATGGCTATGGGAAGTTGGACTTGACT
TTGATTACTCTTGCATCGCTGTGTTGCACGGACATGCTGGAGATGTAAAG
TGCGTCACATGGCATCCAGATTGCGAGCTGCTTGTGTCATGTTCGTACGA
CGAAACTATACGCGTGTGGGTGGAGGACGAAGATGACTGGTTTTGCAGTG
AGGTTCTTACCGGACACAATGGCACAGTATGGGCTGTTGCGTTCGAAGGC
ACAGAGATGGCCAGTGTATCTTCAGACGAAAGTCTCATTATTTGGCGGAG
AGAAAGCACGGGTGATTACCCTGCTTTTCGTGTTACTGCGCGTGTAGATA
AATTGCATGAAAATGGTATTCTAAGCGTGGATTGGAAGAAGCTAATCGTG
ACAGGTGGCGCTGATGATAGTATCTGCGTATTGCGAAGAAAGGATGAGAC
ACCGAATGATCCCAATGATAGTCAAGTTGAAATCTCGAAGCTTAATGGCG
GGTGGGATATTGTGGCTCGGCAGCCTCGTGCTCATCGTGGAGACGTAAAC
CGCGTGGCCTGGAGCCCAGTGGAAGACAATGTTCTTGCTTCATGTGGTGA
CGACAGTCAAGTGCGTATTTGGCTGTATGAAGAGGGCGAAGATGAGATAA
TTGCAGGTAGATGA

protein sequence of Gchil3498.t1

>Gchil3498.t1 ID=Gchil3498.t1|Name=Gchil3498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=338bp
MTLRGHTGIVWSVTWSSSGLLASCGSDKTVRLWKIDRQRSSFQLVTVFDS
QTFLRTTRDLTFSPDGRSLAVASFDASATILELFGGKSPRFDPVVVLEGH
ESEVKSVAYSSSGGLLASCSRDRSVWLWEVGLDFDYSCIAVLHGHAGDVK
CVTWHPDCELLVSCSYDETIRVWVEDEDDWFCSEVLTGHNGTVWAVAFEG
TEMASVSSDESLIIWRRESTGDYPAFRVTARVDKLHENGILSVDWKKLIV
TGGADDSICVLRRKDETPNDPNDSQVEISKLNGGWDIVARQPRAHRGDVN
RVAWSPVEDNVLASCGDDSQVRIWLYEEGEDEIIAGR*

mRNA from alignment at tig00004378_pilon:579853..580866+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3498.t1 ID=Gchil3498.t1|Name=Gchil3498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00004378_pilon:579853..580866+ (Gracilaria chilensis NLEC103_M9 male)
ATGACACTTCGCGGGCACACGGGCATTGTCTGGTCTGTGACCTGGTCATC
ATCCGGCCTACTCGCATCTTGTGGTAGCGATAAAACCGTCCGGCTCTGGA
AGATAGACCGACAAAGGTCTTCTTTCCAACTTGTTACCGTCTTCGACAGT
CAAACTTTTCTACGCACTACCCGCGATTTAACCTTTTCCCCGGATGGACG
CTCTCTGGCTGTAGCAAGTTTCGATGCGTCTGCAACCATACTCGAATTGT
TCGGTGGCAAAAGTCCCCGATTCGACCCCGTCGTGGTTCTTGAAGGTCAT
GAAAGTGAAGTAAAAAGCGTTGCTTATAGTTCTTCGGGTGGACTGTTGGC
CAGTTGTTCGCGAGATCGAAGCGTATGGCTATGGGAAGTTGGACTTGACT
TTGATTACTCTTGCATCGCTGTGTTGCACGGACATGCTGGAGATGTAAAG
TGCGTCACATGGCATCCAGATTGCGAGCTGCTTGTGTCATGTTCGTACGA
CGAAACTATACGCGTGTGGGTGGAGGACGAAGATGACTGGTTTTGCAGTG
AGGTTCTTACCGGACACAATGGCACAGTATGGGCTGTTGCGTTCGAAGGC
ACAGAGATGGCCAGTGTATCTTCAGACGAAAGTCTCATTATTTGGCGGAG
AGAAAGCACGGGTGATTACCCTGCTTTTCGTGTTACTGCGCGTGTAGATA
AATTGCATGAAAATGGTATTCTAAGCGTGGATTGGAAGAAGCTAATCGTG
ACAGGTGGCGCTGATGATAGTATCTGCGTATTGCGAAGAAAGGATGAGAC
ACCGAATGATCCCAATGATAGTCAAGTTGAAATCTCGAAGCTTAATGGCG
GGTGGGATATTGTGGCTCGGCAGCCTCGTGCTCATCGTGGAGACGTAAAC
CGCGTGGCCTGGAGCCCAGTGGAAGACAATGTTCTTGCTTCATGTGGTGA
CGACAGTCAAGTGCGTATTTGGCTGTATGAAGAGGGCGAAGATGAGATAA
TTGCAGGTAGATGA

Coding sequence (CDS) from alignment at tig00004378_pilon:579853..580866+

>Gchil3498.t1 ID=Gchil3498.t1|Name=Gchil3498.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00004378_pilon:579853..580866+ (Gracilaria chilensis NLEC103_M9 male)
ATGACACTTCGCGGGCACACGGGCATTGTCTGGTCTGTGACCTGGTCATC
ATCCGGCCTACTCGCATCTTGTGGTAGCGATAAAACCGTCCGGCTCTGGA
AGATAGACCGACAAAGGTCTTCTTTCCAACTTGTTACCGTCTTCGACAGT
CAAACTTTTCTACGCACTACCCGCGATTTAACCTTTTCCCCGGATGGACG
CTCTCTGGCTGTAGCAAGTTTCGATGCGTCTGCAACCATACTCGAATTGT
TCGGTGGCAAAAGTCCCCGATTCGACCCCGTCGTGGTTCTTGAAGGTCAT
GAAAGTGAAGTAAAAAGCGTTGCTTATAGTTCTTCGGGTGGACTGTTGGC
CAGTTGTTCGCGAGATCGAAGCGTATGGCTATGGGAAGTTGGACTTGACT
TTGATTACTCTTGCATCGCTGTGTTGCACGGACATGCTGGAGATGTAAAG
TGCGTCACATGGCATCCAGATTGCGAGCTGCTTGTGTCATGTTCGTACGA
CGAAACTATACGCGTGTGGGTGGAGGACGAAGATGACTGGTTTTGCAGTG
AGGTTCTTACCGGACACAATGGCACAGTATGGGCTGTTGCGTTCGAAGGC
ACAGAGATGGCCAGTGTATCTTCAGACGAAAGTCTCATTATTTGGCGGAG
AGAAAGCACGGGTGATTACCCTGCTTTTCGTGTTACTGCGCGTGTAGATA
AATTGCATGAAAATGGTATTCTAAGCGTGGATTGGAAGAAGCTAATCGTG
ACAGGTGGCGCTGATGATAGTATCTGCGTATTGCGAAGAAAGGATGAGAC
ACCGAATGATCCCAATGATAGTCAAGTTGAAATCTCGAAGCTTAATGGCG
GGTGGGATATTGTGGCTCGGCAGCCTCGTGCTCATCGTGGAGACGTAAAC
CGCGTGGCCTGGAGCCCAGTGGAAGACAATGTTCTTGCTTCATGTGGTGA
CGACAGTCAAGTGCGTATTTGGCTGTATGAAGAGGGCGAAGATGAGATAA
TTGCAGGTAGATGA