Gchil3429.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3429.t1
Unique NameGchil3429.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length468
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:71811..73303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3429Gchil3429Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 71811..73303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3429.t1Gchil3429.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 71811..73303 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3429.t1.stop1Gchil3429.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 71811..71813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3429.t1.CDS1Gchil3429.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 71811..72537 -
Gchil3429.t1.CDS2Gchil3429.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 72627..73303 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3429.t1.exon1Gchil3429.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 71811..72537 -
Gchil3429.t1.exon2Gchil3429.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 72627..73303 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3429.t1.intron1Gchil3429.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004378_pilon 72538..72626 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3429.t1.start1Gchil3429.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 73301..73303 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3429.t1 ID=Gchil3429.t1|Name=Gchil3429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=468bp
MSPRQPDNANPPPLLTGRDIAAQLTPSDSNVQLSEEHGPFCVPLVPQLPP
DSIALEHTPIASASPRQLSDAATICPEPHPIGTELDALYTFIARRTKAEL
QDIAKHLSITKSGKKGEIVVGMILTAKKKGMIGIPLEEWFLDKGALQDFH
MIRNSSILLGCCPEEEHLLKELTQRERDLWTKDLDRVRSCIRDAQDESNS
NAITTQAPPALDKDKVPNFSLDEFALVSRDDFFFMVKNRFNDTTLLTRAD
LSTVIENIDSSRAPLAQRSSALLKRHYQEARKDFTFFYEKWSASGQNDPE
RSPDFFLKHPNRSFMTASARSLILSKLFCCGTGNEDTELIHLFSRVLEDD
VGYDTGVHGEEGDEIPRGAPLRKKRRRSNNSSLLEDKIQTLVDITPSSVM
VSQRQKTGFDGSIIQKQLEIVRAEIKCRSLQGEADNAEVTEMKDFVEKTS
WKLLRKMKDNVNKMLDE*
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spliced messenger RNA

>Gchil3429.t1 ID=Gchil3429.t1|Name=Gchil3429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1404bp|location=Sequence derived from alignment at tig00004378_pilon:71811..73303- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCACCCAGACAACCCGATAATGCCAATCCTCCTCCTCTTCTTACCGG
ACGCGATATTGCCGCCCAGCTGACGCCGTCCGACTCGAATGTGCAGCTCT
CTGAGGAACATGGCCCATTCTGTGTTCCATTAGTACCACAGCTCCCGCCT
GACAGCATCGCTCTCGAACATACGCCGATAGCCTCTGCATCTCCCAGACA
GTTGTCCGATGCCGCCACCATATGTCCAGAGCCTCACCCGATCGGCACAG
AGCTTGACGCACTTTATACTTTTATTGCTCGGAGGACAAAGGCCGAGCTG
CAGGACATTGCGAAGCACCTTTCCATTACAAAAAGTGGGAAAAAAGGCGA
AATCGTTGTGGGCATGATTCTGACAGCCAAGAAGAAAGGAATGATCGGGA
TACCTCTAGAAGAATGGTTCTTAGATAAAGGTGCTCTACAGGATTTTCAC
ATGATTCGTAACAGTTCAATTCTTTTAGGATGCTGTCCGGAAGAAGAACA
TCTTCTGAAGGAGTTAACACAACGGGAACGCGACTTATGGACAAAAGACT
TGGATCGCGTTCGCTCTTGCATTCGCGACGCTCAAGATGAGTCCAATTCA
AATGCCATAACTACTCAAGCTCCGCCAGCACTAGACAAGGACAAAGTTCC
GAACTTCTCATTAGATGAGTTTGCCTTGGTCTCTCGAGATGACTTCTTTT
TCATGGTCAAAAATCGTTTTAATGACACTACGCTACTCACCAGAGCAGAT
CTTTCAACCGTTATAGAGAATATTGATTCGTCCCGAGCTCCCCTTGCGCA
AAGATCTTCGGCTTTACTGAAGCGACATTACCAAGAGGCAAGGAAGGATT
TTACTTTCTTCTACGAAAAATGGTCGGCATCGGGACAGAACGACCCCGAA
CGCTCTCCGGATTTTTTTCTCAAGCATCCAAATCGGTCGTTTATGACTGC
CTCAGCCCGTTCGCTTATTTTGTCTAAGCTGTTTTGCTGCGGAACGGGCA
ATGAGGACACTGAGCTGATACACCTGTTTTCTAGGGTACTGGAGGATGAC
GTTGGCTACGATACAGGAGTGCACGGTGAAGAAGGCGATGAAATTCCTCG
TGGTGCTCCATTGCGAAAGAAGAGACGCCGTTCAAATAACTCCAGTCTTT
TAGAGGATAAGATACAAACGCTTGTGGACATCACGCCGTCGTCGGTAATG
GTTTCACAGAGGCAGAAGACGGGGTTTGATGGATCAATAATACAGAAGCA
GTTGGAAATAGTGAGGGCAGAGATTAAATGCCGTTCTCTGCAGGGCGAGG
CAGATAATGCGGAGGTAACAGAGATGAAGGATTTTGTGGAAAAGACTTCA
TGGAAGCTTCTCCGCAAAATGAAGGACAACGTGAACAAGATGTTGGATGA
ATAA
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protein sequence of Gchil3429.t1

>Gchil3429.t1 ID=Gchil3429.t1|Name=Gchil3429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=468bp
MSPRQPDNANPPPLLTGRDIAAQLTPSDSNVQLSEEHGPFCVPLVPQLPP
DSIALEHTPIASASPRQLSDAATICPEPHPIGTELDALYTFIARRTKAEL
QDIAKHLSITKSGKKGEIVVGMILTAKKKGMIGIPLEEWFLDKGALQDFH
MIRNSSILLGCCPEEEHLLKELTQRERDLWTKDLDRVRSCIRDAQDESNS
NAITTQAPPALDKDKVPNFSLDEFALVSRDDFFFMVKNRFNDTTLLTRAD
LSTVIENIDSSRAPLAQRSSALLKRHYQEARKDFTFFYEKWSASGQNDPE
RSPDFFLKHPNRSFMTASARSLILSKLFCCGTGNEDTELIHLFSRVLEDD
VGYDTGVHGEEGDEIPRGAPLRKKRRRSNNSSLLEDKIQTLVDITPSSVM
VSQRQKTGFDGSIIQKQLEIVRAEIKCRSLQGEADNAEVTEMKDFVEKTS
WKLLRKMKDNVNKMLDE*
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mRNA from alignment at tig00004378_pilon:71811..73303-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3429.t1 ID=Gchil3429.t1|Name=Gchil3429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1493bp|location=Sequence derived from alignment at tig00004378_pilon:71811..73303- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACCCAGACAACCCGATAATGCCAATCCTCCTCCTCTTCTTACCGG
ACGCGATATTGCCGCCCAGCTGACGCCGTCCGACTCGAATGTGCAGCTCT
CTGAGGAACATGGCCCATTCTGTGTTCCATTAGTACCACAGCTCCCGCCT
GACAGCATCGCTCTCGAACATACGCCGATAGCCTCTGCATCTCCCAGACA
GTTGTCCGATGCCGCCACCATATGTCCAGAGCCTCACCCGATCGGCACAG
AGCTTGACGCACTTTATACTTTTATTGCTCGGAGGACAAAGGCCGAGCTG
CAGGACATTGCGAAGCACCTTTCCATTACAAAAAGTGGGAAAAAAGGCGA
AATCGTTGTGGGCATGATTCTGACAGCCAAGAAGAAAGGAATGATCGGGA
TACCTCTAGAAGAATGGTTCTTAGATAAAGGTGCTCTACAGGATTTTCAC
ATGATTCGTAACAGTTCAATTCTTTTAGGATGCTGTCCGGAAGAAGAACA
TCTTCTGAAGGAGTTAACACAACGGGAACGCGACTTATGGACAAAAGACT
TGGATCGCGTTCGCTCTTGCATTCGCGACGCTCAAGATGAGTCCAATTCA
AATGCCATAACTACTCAAGCTCCGCCAGCACTAGACAAGGACAAAGTTCC
GAACTTCTCATTAGATGAGTTTGCCTTGTTATCGTTATTCGTGACGACGA
TATCGCTCGAAAATCAATGAAACGCGCTGTCGGTTCTCCTCTGGAGCGTC
GTGAGCTCAACGATAGGGTCTCTCGAGATGACTTCTTTTTCATGGTCAAA
AATCGTTTTAATGACACTACGCTACTCACCAGAGCAGATCTTTCAACCGT
TATAGAGAATATTGATTCGTCCCGAGCTCCCCTTGCGCAAAGATCTTCGG
CTTTACTGAAGCGACATTACCAAGAGGCAAGGAAGGATTTTACTTTCTTC
TACGAAAAATGGTCGGCATCGGGACAGAACGACCCCGAACGCTCTCCGGA
TTTTTTTCTCAAGCATCCAAATCGGTCGTTTATGACTGCCTCAGCCCGTT
CGCTTATTTTGTCTAAGCTGTTTTGCTGCGGAACGGGCAATGAGGACACT
GAGCTGATACACCTGTTTTCTAGGGTACTGGAGGATGACGTTGGCTACGA
TACAGGAGTGCACGGTGAAGAAGGCGATGAAATTCCTCGTGGTGCTCCAT
TGCGAAAGAAGAGACGCCGTTCAAATAACTCCAGTCTTTTAGAGGATAAG
ATACAAACGCTTGTGGACATCACGCCGTCGTCGGTAATGGTTTCACAGAG
GCAGAAGACGGGGTTTGATGGATCAATAATACAGAAGCAGTTGGAAATAG
TGAGGGCAGAGATTAAATGCCGTTCTCTGCAGGGCGAGGCAGATAATGCG
GAGGTAACAGAGATGAAGGATTTTGTGGAAAAGACTTCATGGAAGCTTCT
CCGCAAAATGAAGGACAACGTGAACAAGATGTTGGATGAATAA
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Coding sequence (CDS) from alignment at tig00004378_pilon:71811..73303-

>Gchil3429.t1 ID=Gchil3429.t1|Name=Gchil3429.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1404bp|location=Sequence derived from alignment at tig00004378_pilon:71811..73303- (Gracilaria chilensis NLEC103_M9 male)
ATGTCACCCAGACAACCCGATAATGCCAATCCTCCTCCTCTTCTTACCGG
ACGCGATATTGCCGCCCAGCTGACGCCGTCCGACTCGAATGTGCAGCTCT
CTGAGGAACATGGCCCATTCTGTGTTCCATTAGTACCACAGCTCCCGCCT
GACAGCATCGCTCTCGAACATACGCCGATAGCCTCTGCATCTCCCAGACA
GTTGTCCGATGCCGCCACCATATGTCCAGAGCCTCACCCGATCGGCACAG
AGCTTGACGCACTTTATACTTTTATTGCTCGGAGGACAAAGGCCGAGCTG
CAGGACATTGCGAAGCACCTTTCCATTACAAAAAGTGGGAAAAAAGGCGA
AATCGTTGTGGGCATGATTCTGACAGCCAAGAAGAAAGGAATGATCGGGA
TACCTCTAGAAGAATGGTTCTTAGATAAAGGTGCTCTACAGGATTTTCAC
ATGATTCGTAACAGTTCAATTCTTTTAGGATGCTGTCCGGAAGAAGAACA
TCTTCTGAAGGAGTTAACACAACGGGAACGCGACTTATGGACAAAAGACT
TGGATCGCGTTCGCTCTTGCATTCGCGACGCTCAAGATGAGTCCAATTCA
AATGCCATAACTACTCAAGCTCCGCCAGCACTAGACAAGGACAAAGTTCC
GAACTTCTCATTAGATGAGTTTGCCTTGGTCTCTCGAGATGACTTCTTTT
TCATGGTCAAAAATCGTTTTAATGACACTACGCTACTCACCAGAGCAGAT
CTTTCAACCGTTATAGAGAATATTGATTCGTCCCGAGCTCCCCTTGCGCA
AAGATCTTCGGCTTTACTGAAGCGACATTACCAAGAGGCAAGGAAGGATT
TTACTTTCTTCTACGAAAAATGGTCGGCATCGGGACAGAACGACCCCGAA
CGCTCTCCGGATTTTTTTCTCAAGCATCCAAATCGGTCGTTTATGACTGC
CTCAGCCCGTTCGCTTATTTTGTCTAAGCTGTTTTGCTGCGGAACGGGCA
ATGAGGACACTGAGCTGATACACCTGTTTTCTAGGGTACTGGAGGATGAC
GTTGGCTACGATACAGGAGTGCACGGTGAAGAAGGCGATGAAATTCCTCG
TGGTGCTCCATTGCGAAAGAAGAGACGCCGTTCAAATAACTCCAGTCTTT
TAGAGGATAAGATACAAACGCTTGTGGACATCACGCCGTCGTCGGTAATG
GTTTCACAGAGGCAGAAGACGGGGTTTGATGGATCAATAATACAGAAGCA
GTTGGAAATAGTGAGGGCAGAGATTAAATGCCGTTCTCTGCAGGGCGAGG
CAGATAATGCGGAGGTAACAGAGATGAAGGATTTTGTGGAAAAGACTTCA
TGGAAGCTTCTCCGCAAAATGAAGGACAACGTGAACAAGATGTTGGATGA
ATAA
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