Gchil3448.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3448.t1
Unique NameGchil3448.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:182371..183123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_03740T0
PFAMsSOUL
Max annot lvl2759|Eukaryota
Evalue1.17e-31
EggNOG OGs28MKZ@1|root,2QU4S@2759|Eukaryota
DescriptionSOUL heme-binding protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3448Gchil3448Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 182371..183123 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3448.t1.start1Gchil3448.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 182371..182373 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3448.t1.CDS1Gchil3448.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 182371..183123 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3448.t1.exon1Gchil3448.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 182371..183123 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3448.t1.stop1Gchil3448.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 183121..183123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3448.t1Gchil3448.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 182371..183123 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3448.t1 ID=Gchil3448.t1|Name=Gchil3448.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=251bp
MGAVLGRIGVETPAHVVVRRAEGYEVWRYPSSVVAVVRAHSLDPANPPTG
DAFSNQAFRALARYIGVFGTPQNTPTSAVEHQNTESDPQSQSQSQSQPEA
EPQSLSMTAPVIVPAPQKLAMTAPVIMPASKPEAAQRGADCMMFVLPSHI
TRVEDAPRPTNDAVQLQMLPAGRCEAVLSFTGSFDFERNAEKAAQLLAML
QRDKVSVVGDWNAQGYNPPFTLPWLKRNEVHVPVDPQPYEHIDGEAKTSE
*
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spliced messenger RNA

>Gchil3448.t1 ID=Gchil3448.t1|Name=Gchil3448.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00004378_pilon:182371..183123+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGCCGTCTTGGGTCGCATCGGAGTCGAGACGCCGGCGCACGTCGT
CGTGCGTCGCGCTGAAGGCTATGAGGTGTGGCGCTACCCGTCCAGCGTGG
TGGCCGTCGTGCGCGCACACTCGTTGGACCCCGCCAACCCCCCCACCGGC
GACGCCTTCTCCAACCAGGCCTTCCGCGCGCTGGCGCGCTACATCGGCGT
CTTCGGTACCCCGCAAAACACGCCTACGTCTGCTGTCGAACACCAAAACA
CCGAATCCGACCCCcagtcgcagtcgcagtcgcagtcgcagCCGGAGGCG
GAGCCGCAATCGCTGTCCATGACCGCGCCCGTCATCGTGCCCGCTCCGCA
GAAGCTCGCCATGACCGCGCCCGTCATCATGCCTGCGTCCAAGCCTGAAG
CCGCGCAGCGCGGCGCGGATTGCATGATGTTCGTGCTTCCGTCGCACATT
ACGCGCGTTGAGGATGCGCCGCGTCCGACTAATGACGCCGTGCAGCTGCA
AATGTTGCCTGCCGGCAGATGCGAGGCCGTCTTGTCCTTTACCGGCTCGT
TCGACTTCGAGCGCAACGCCGAGAAGGCCGCACAATTGTTGGCCATGCTT
CAGCGCGACAAAGTGTCTGTCGTGGGCGACTGGAACGCGCAGGGCTATAA
TCCGCCCTTCACGCTGCCGTGGCTCAAGCGCAACGAGGTGCATGTGCCCG
TTGATCCGCAGCCCTACGAGCACATCGACGGGGAAGCGAAAACGTCCGAA
TGA
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protein sequence of Gchil3448.t1

>Gchil3448.t1 ID=Gchil3448.t1|Name=Gchil3448.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=251bp
MGAVLGRIGVETPAHVVVRRAEGYEVWRYPSSVVAVVRAHSLDPANPPTG
DAFSNQAFRALARYIGVFGTPQNTPTSAVEHQNTESDPQSQSQSQSQPEA
EPQSLSMTAPVIVPAPQKLAMTAPVIMPASKPEAAQRGADCMMFVLPSHI
TRVEDAPRPTNDAVQLQMLPAGRCEAVLSFTGSFDFERNAEKAAQLLAML
QRDKVSVVGDWNAQGYNPPFTLPWLKRNEVHVPVDPQPYEHIDGEAKTSE
*
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mRNA from alignment at tig00004378_pilon:182371..183123+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3448.t1 ID=Gchil3448.t1|Name=Gchil3448.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00004378_pilon:182371..183123+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGCCGTCTTGGGTCGCATCGGAGTCGAGACGCCGGCGCACGTCGT
CGTGCGTCGCGCTGAAGGCTATGAGGTGTGGCGCTACCCGTCCAGCGTGG
TGGCCGTCGTGCGCGCACACTCGTTGGACCCCGCCAACCCCCCCACCGGC
GACGCCTTCTCCAACCAGGCCTTCCGCGCGCTGGCGCGCTACATCGGCGT
CTTCGGTACCCCGCAAAACACGCCTACGTCTGCTGTCGAACACCAAAACA
CCGAATCCGACCCCcagtcgcagtcgcagtcgcagtcgcagCCGGAGGCG
GAGCCGCAATCGCTGTCCATGACCGCGCCCGTCATCGTGCCCGCTCCGCA
GAAGCTCGCCATGACCGCGCCCGTCATCATGCCTGCGTCCAAGCCTGAAG
CCGCGCAGCGCGGCGCGGATTGCATGATGTTCGTGCTTCCGTCGCACATT
ACGCGCGTTGAGGATGCGCCGCGTCCGACTAATGACGCCGTGCAGCTGCA
AATGTTGCCTGCCGGCAGATGCGAGGCCGTCTTGTCCTTTACCGGCTCGT
TCGACTTCGAGCGCAACGCCGAGAAGGCCGCACAATTGTTGGCCATGCTT
CAGCGCGACAAAGTGTCTGTCGTGGGCGACTGGAACGCGCAGGGCTATAA
TCCGCCCTTCACGCTGCCGTGGCTCAAGCGCAACGAGGTGCATGTGCCCG
TTGATCCGCAGCCCTACGAGCACATCGACGGGGAAGCGAAAACGTCCGAA
TGA
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Coding sequence (CDS) from alignment at tig00004378_pilon:182371..183123+

>Gchil3448.t1 ID=Gchil3448.t1|Name=Gchil3448.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00004378_pilon:182371..183123+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTGCCGTCTTGGGTCGCATCGGAGTCGAGACGCCGGCGCACGTCGT
CGTGCGTCGCGCTGAAGGCTATGAGGTGTGGCGCTACCCGTCCAGCGTGG
TGGCCGTCGTGCGCGCACACTCGTTGGACCCCGCCAACCCCCCCACCGGC
GACGCCTTCTCCAACCAGGCCTTCCGCGCGCTGGCGCGCTACATCGGCGT
CTTCGGTACCCCGCAAAACACGCCTACGTCTGCTGTCGAACACCAAAACA
CCGAATCCGACCCCcagtcgcagtcgcagtcgcagtcgcagCCGGAGGCG
GAGCCGCAATCGCTGTCCATGACCGCGCCCGTCATCGTGCCCGCTCCGCA
GAAGCTCGCCATGACCGCGCCCGTCATCATGCCTGCGTCCAAGCCTGAAG
CCGCGCAGCGCGGCGCGGATTGCATGATGTTCGTGCTTCCGTCGCACATT
ACGCGCGTTGAGGATGCGCCGCGTCCGACTAATGACGCCGTGCAGCTGCA
AATGTTGCCTGCCGGCAGATGCGAGGCCGTCTTGTCCTTTACCGGCTCGT
TCGACTTCGAGCGCAACGCCGAGAAGGCCGCACAATTGTTGGCCATGCTT
CAGCGCGACAAAGTGTCTGTCGTGGGCGACTGGAACGCGCAGGGCTATAA
TCCGCCCTTCACGCTGCCGTGGCTCAAGCGCAACGAGGTGCATGTGCCCG
TTGATCCGCAGCCCTACGAGCACATCGACGGGGAAGCGAAAACGTCCGAA
TGA
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