Gchil3569.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3569.t1
Unique Name	Gchil3569.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	397

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:1416106..1417296 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_04553T0
Max annot lvl	4751\|Fungi
Evalue	1.71e-11
EggNOG OGs	2E3H1@1\|root,2SAJC@2759\|Eukaryota,3ARBF@33154\|Opisthokonta,3PFVF@4751\|Fungi
Description	Allomyces macrogynus ATCC 38327
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3569	Gchil3569	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 1416106..1417296 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3569.t1.start1	Gchil3569.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 1416106..1416108 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3569.t1.CDS1	Gchil3569.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 1416106..1417296 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3569.t1.exon1	Gchil3569.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 1416106..1417296 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3569.t1.stop1	Gchil3569.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 1417294..1417296 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3569.t1	Gchil3569.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 1416106..1417296 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:1416106..1417296+
coding sequence from alignment at tig00004378_pilon:1416106..1417296+

mRNA sequence

>Gchil3569.t1 ID=Gchil3569.t1|Name=Gchil3569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=397bp
MNTFLTTTPLKMYSFLILLSIGASFIHLTCAHQAIAYPWPISNDGACRVG
KFKNCAGPCPSRDLRLDQTPDSPSITIRRGQSVLINIMRNNHAGGFARWT
LVNVKHMYNKKEHEKGAFYYTCGDQRITYCNSNNKRRDCNYDVSNRYYRH
QIPVPEIYADGVYVLGYAWYGGTQGHGESGDFGDYYDCMYVEVKGGPNKQ
WHQPTFDMGQSATGSKGLCKTRTTWLGDCWKEPCTHRKKSRATVPSQFSN
GRKPNKIWRSSFQKPYKLAKPGKTAPNVYGVSIRSVDRPGEVYASSLSGS
IRTFKSTSHIRITATCDVSGSVRHVIFYRNGVPVRKVAQAPYSIAGALWS
RTKGKAVWKLRPWTPPVLGKDFYSLSCVVYGKDGSVQYAKMDVQQS*

spliced messenger RNA

>Gchil3569.t1 ID=Gchil3569.t1|Name=Gchil3569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at tig00004378_pilon:1416106..1417296+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACTTTCCTGACAACCACGCCCCTCAAAATGTATTCCTTTCTCAT
CCTACTCTCGATCGGCGCCAGCTTTATCCATTTGACCTGTGCTCATCAAG
CAATTGCCTATCCATGGCCCATTTCGAACGACGGTGCCTGTCGGGTGGGC
AAGTTCAAAAACTGCGCTGGTCCCTGCCCATCCCGCGATCTCCGCCTGGA
TCAAACTCCCGATTCGCCATCTATTACAATTCGCCGCGGACAGTCAGTTC
TCATAAACATCATGCGCAACAACCACGCTGGTGGCTTTGCAAGATGGACT
TTGGTTAATGTCAAACACATGTACAATAAAAAGGAGCATGAGAAGGGAGC
ATTCTACTACACTTGCGGTGACCAGAGGATAACTTACTGCAACTCTAACA
ACAAACGGCGTGATTGTAATTACGATGTGAGCAACCGCTACTATCGACAT
CAAATTCCTGTGCCGGAGATATACGCGGATGGTGTATATGTGCTGGGATA
TGCCTGGTACGGAGGCACTCAGGGTCACGGTGAGAGTGGTGATTTTGGAG
ACTATTACGATTGTATGTATGTTGAAGTAAAGGGTGGGCCAAATAAGCAA
TGGCATCAACCAACATTTGATATGGGTCAATCAGCTACAGGAAGCAAAGG
ACTTTGCAAGACTCGAACAACATGGCTGGGCGACTGCTGGAAAGAACCGT
GCACACACAGAAAGAAAAGCCGCGCAACTGTTCCGTCGCAGTTTTCTAAT
GGAAGGAAACCTAATAAGATTTGGAGATCGTCGTTTCAAAAGCCATACAA
ACTTGCCAAACCGGGCAAGACTGCGCCAAATGTATACGGGGTTTCTATCC
GTTCAGTGGACAGACCTGGCGAAGTGTACGCAAGCTCACTCTCTGGGTCC
ATTAGGACGTTTAAGAGCACGAGTCATATCAGAATCACCGCCACTTGTGA
TGTGTCTGGATCGGTCCGTCACGTCATTTTTTATAGAAATGGAGTGCCTG
TTCGGAAGGTGGCGCAGGCACCGTACAGCATTGCCGGTGCACTGTGGAGC
AGGACGAAAGGGAAGGCCGTTTGGAAGCTCCGCCCATGGACTCCCCCTGT
CTTGGGGAAAGACTTTTACTCGCTTTCTTGTGTGGTTTATGGCAAGGATG
GAAGCGTGCAATACGCAAAGATGGATGTGCAACAGTCCTGA

protein sequence of Gchil3569.t1

>Gchil3569.t1 ID=Gchil3569.t1|Name=Gchil3569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=397bp
MNTFLTTTPLKMYSFLILLSIGASFIHLTCAHQAIAYPWPISNDGACRVG
KFKNCAGPCPSRDLRLDQTPDSPSITIRRGQSVLINIMRNNHAGGFARWT
LVNVKHMYNKKEHEKGAFYYTCGDQRITYCNSNNKRRDCNYDVSNRYYRH
QIPVPEIYADGVYVLGYAWYGGTQGHGESGDFGDYYDCMYVEVKGGPNKQ
WHQPTFDMGQSATGSKGLCKTRTTWLGDCWKEPCTHRKKSRATVPSQFSN
GRKPNKIWRSSFQKPYKLAKPGKTAPNVYGVSIRSVDRPGEVYASSLSGS
IRTFKSTSHIRITATCDVSGSVRHVIFYRNGVPVRKVAQAPYSIAGALWS
RTKGKAVWKLRPWTPPVLGKDFYSLSCVVYGKDGSVQYAKMDVQQS*

mRNA from alignment at tig00004378_pilon:1416106..1417296+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3569.t1 ID=Gchil3569.t1|Name=Gchil3569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1191bp|location=Sequence derived from alignment at tig00004378_pilon:1416106..1417296+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACACTTTCCTGACAACCACGCCCCTCAAAATGTATTCCTTTCTCAT
CCTACTCTCGATCGGCGCCAGCTTTATCCATTTGACCTGTGCTCATCAAG
CAATTGCCTATCCATGGCCCATTTCGAACGACGGTGCCTGTCGGGTGGGC
AAGTTCAAAAACTGCGCTGGTCCCTGCCCATCCCGCGATCTCCGCCTGGA
TCAAACTCCCGATTCGCCATCTATTACAATTCGCCGCGGACAGTCAGTTC
TCATAAACATCATGCGCAACAACCACGCTGGTGGCTTTGCAAGATGGACT
TTGGTTAATGTCAAACACATGTACAATAAAAAGGAGCATGAGAAGGGAGC
ATTCTACTACACTTGCGGTGACCAGAGGATAACTTACTGCAACTCTAACA
ACAAACGGCGTGATTGTAATTACGATGTGAGCAACCGCTACTATCGACAT
CAAATTCCTGTGCCGGAGATATACGCGGATGGTGTATATGTGCTGGGATA
TGCCTGGTACGGAGGCACTCAGGGTCACGGTGAGAGTGGTGATTTTGGAG
ACTATTACGATTGTATGTATGTTGAAGTAAAGGGTGGGCCAAATAAGCAA
TGGCATCAACCAACATTTGATATGGGTCAATCAGCTACAGGAAGCAAAGG
ACTTTGCAAGACTCGAACAACATGGCTGGGCGACTGCTGGAAAGAACCGT
GCACACACAGAAAGAAAAGCCGCGCAACTGTTCCGTCGCAGTTTTCTAAT
GGAAGGAAACCTAATAAGATTTGGAGATCGTCGTTTCAAAAGCCATACAA
ACTTGCCAAACCGGGCAAGACTGCGCCAAATGTATACGGGGTTTCTATCC
GTTCAGTGGACAGACCTGGCGAAGTGTACGCAAGCTCACTCTCTGGGTCC
ATTAGGACGTTTAAGAGCACGAGTCATATCAGAATCACCGCCACTTGTGA
TGTGTCTGGATCGGTCCGTCACGTCATTTTTTATAGAAATGGAGTGCCTG
TTCGGAAGGTGGCGCAGGCACCGTACAGCATTGCCGGTGCACTGTGGAGC
AGGACGAAAGGGAAGGCCGTTTGGAAGCTCCGCCCATGGACTCCCCCTGT
CTTGGGGAAAGACTTTTACTCGCTTTCTTGTGTGGTTTATGGCAAGGATG
GAAGCGTGCAATACGCAAAGATGGATGTGCAACAGTCCTGA

Coding sequence (CDS) from alignment at tig00004378_pilon:1416106..1417296+

>Gchil3569.t1 ID=Gchil3569.t1|Name=Gchil3569.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1191bp|location=Sequence derived from alignment at tig00004378_pilon:1416106..1417296+ (Gracilaria chilensis NLEC103_M9 male)
ATGAACACTTTCCTGACAACCACGCCCCTCAAAATGTATTCCTTTCTCAT
CCTACTCTCGATCGGCGCCAGCTTTATCCATTTGACCTGTGCTCATCAAG
CAATTGCCTATCCATGGCCCATTTCGAACGACGGTGCCTGTCGGGTGGGC
AAGTTCAAAAACTGCGCTGGTCCCTGCCCATCCCGCGATCTCCGCCTGGA
TCAAACTCCCGATTCGCCATCTATTACAATTCGCCGCGGACAGTCAGTTC
TCATAAACATCATGCGCAACAACCACGCTGGTGGCTTTGCAAGATGGACT
TTGGTTAATGTCAAACACATGTACAATAAAAAGGAGCATGAGAAGGGAGC
ATTCTACTACACTTGCGGTGACCAGAGGATAACTTACTGCAACTCTAACA
ACAAACGGCGTGATTGTAATTACGATGTGAGCAACCGCTACTATCGACAT
CAAATTCCTGTGCCGGAGATATACGCGGATGGTGTATATGTGCTGGGATA
TGCCTGGTACGGAGGCACTCAGGGTCACGGTGAGAGTGGTGATTTTGGAG
ACTATTACGATTGTATGTATGTTGAAGTAAAGGGTGGGCCAAATAAGCAA
TGGCATCAACCAACATTTGATATGGGTCAATCAGCTACAGGAAGCAAAGG
ACTTTGCAAGACTCGAACAACATGGCTGGGCGACTGCTGGAAAGAACCGT
GCACACACAGAAAGAAAAGCCGCGCAACTGTTCCGTCGCAGTTTTCTAAT
GGAAGGAAACCTAATAAGATTTGGAGATCGTCGTTTCAAAAGCCATACAA
ACTTGCCAAACCGGGCAAGACTGCGCCAAATGTATACGGGGTTTCTATCC
GTTCAGTGGACAGACCTGGCGAAGTGTACGCAAGCTCACTCTCTGGGTCC
ATTAGGACGTTTAAGAGCACGAGTCATATCAGAATCACCGCCACTTGTGA
TGTGTCTGGATCGGTCCGTCACGTCATTTTTTATAGAAATGGAGTGCCTG
TTCGGAAGGTGGCGCAGGCACCGTACAGCATTGCCGGTGCACTGTGGAGC
AGGACGAAAGGGAAGGCCGTTTGGAAGCTCCGCCCATGGACTCCCCCTGT
CTTGGGGAAAGACTTTTACTCGCTTTCTTGTGTGGTTTATGGCAAGGATG
GAAGCGTGCAATACGCAAAGATGGATGTGCAACAGTCCTGA