Gchil3490.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3490.t1
Unique Name	Gchil3490.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	722

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:550617..552782 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	653948.CCA22551
PFAMs	DNA_pol_A,DNA_pol_A_exo1
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC02795
KEGG ko	ko:K02335
KEGG Reaction	R00375,R00376,R00377,R00378
KEGG Pathway	ko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
GOs	GO:0000002,GO:0003674,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006264,GO:0006725,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008409,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009657,GO:0009987,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0018130,GO:0019438,GO:0032042,GO:0033258,GO:0033259,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0140097,GO:1901360,GO:1901362,GO:1901576
Evalue	2.86e-27
EggNOG OGs	COG0749@1\|root,KOG0950@2759\|Eukaryota
EC	2.7.7.7
Description	plastid DNA replication
COG category	L
BRITE	ko00000,ko00001,ko01000,ko03032,ko03400

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3490	Gchil3490	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 550617..552782 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3490.t1.start1	Gchil3490.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 550617..550619 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3490.t1.CDS1	Gchil3490.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 550617..552782 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3490.t1.exon1	Gchil3490.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 550617..552782 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3490.t1.stop1	Gchil3490.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 552780..552782 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3490.t1	Gchil3490.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 550617..552782 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:550617..552782+
coding sequence from alignment at tig00004378_pilon:550617..552782+

mRNA sequence

>Gchil3490.t1 ID=Gchil3490.t1|Name=Gchil3490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=722bp
MLSVRSGIGIRQRISVFRKTFASKALATSQEQNDFEGIHRKVSIVHDLRT
ASQSIEALLRLPEGTPVAWSTQALPPRASPAMVTMCGYAGDAFQGGAWTF
ICPSSTHEAAVWGLLREFFRDRIAKTVCFDIENFASHLYSRGIQADGCVH
DAQTLMRISGLKEKGFDSSVIDVLDKRTLSKRESMFGDQDRPWEAPSLEL
NCLSDEWVSSACADAHAIFHIYQRMRSKMLKNGLISAEAKNSFEAYEQFY
SQVERILPSLGKHAFFLDEVTHRNIMTGFEKDREYQQSIFDSWAQKYCDQ
ASQVDVTFSMLRHMLFAPCQNMRNKRERIPAEKEFFVCEREVRGHDVETL
PTHKKRTKKKRVLVRGAGLEAQEYTTTGTPSTSISALQSLVSTLSSSEQP
ELQAACSAINGKLRAQTSRLAAQNFEKNVKKVVDPDEQVRVKTKTDFERG
RLQRSVPSSVVDVLRAKKDHEVLVLNFENLNLCALADLSECERLKKRLRF
NDGVHAYLAKEFSKEISHALYNGRCVLKGEGITVEKAFPEKFRMARMLDG
CMSKGPRIEIVKNAMKCDQARASQLIDGWFKVHPAVESWCKEELGRMRAK
KVAQTIRGRQRVLKIGKGKRSVFVLNEGLTFAIEGSVGDFMMQSLLKIAQ
SERINALAWRAMFADANRIVLHGPSWSTEEAVPAVIDTLASPNGGGPILE
SALHQLGILCGESFRALRRVA*

spliced messenger RNA

>Gchil3490.t1 ID=Gchil3490.t1|Name=Gchil3490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00004378_pilon:550617..552782+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTAGCGTGAGATCGGGGATTGGCATTCGTCAACGCATTTCTGTGTT
TCGAAAGACATTCGCTTCGAAAGCTTTAGCTACATCCCAAGAGCAAAACG
ATTTCGAAGGGATCCATCGAAAGGTTTCAATTGTGCATGACTTAAGAACG
GCCTCGCAATCGATAGAGGCTTTGCTTAGGTTACCAGAAGGCACACCCGT
GGCATGGAGCACTCAAGCCTTGCCTCCTCGAGCATCACCAGCTATGGTGA
CCATGTGCGGATATGCTGGCGACGCATTTCAGGGCGGAGCCTGGACATTT
ATATGCCCATCATCTACACATGAGGCTGCAGTATGGGGGCTCTTGCGTGA
GTTTTTTCGTGACAGGATAGCGAAGACCGTGTGTTTTGATATAGAAAATT
TCGCGAGCCATCTATATAGCAGGGGTATTCAGGCTGATGGATGCGTTCAT
GATGCCCAAACATTGATGCGCATCTCGGGACTTAAAGAAAAGGGCTTCGA
TTCCTCTGTTATAGACGTTCTCGATAAGCGTACATTGAGTAAGAGGGAAT
CCATGTTTGGTGATCAGGATCGACCTTGGGAGGCACCATCACTTGAACTA
AACTGTTTGAGTGATGAATGGGTTTCTTCTGCTTGTGCTGATGCACACGC
AATATTCCACATCTATCAAAGAATGAGATCAAAAATGCTCAAAAACGGTC
TGATTTCAGCAGAAGCAAAGAACAGCTTCGAAGCTTACGAACAGTTTTAT
TCCCAGGTTGAGAGAATTCTTCCCTCTCTTGGAAAACATGCATTTTTTCT
GGACGAGGTCACGCATCGTAATATTATGACGGGTTTCGAAAAAGATCGAG
AGTATCAGCAGTCTATCTTCGATAGCTGGGCTCAAAAGTACTGCGATCAA
GCATCACAAGTGGATGTGACCTTTTCCATGCTACGGCATATGCTATTCGC
CCCGTGCCAGAATATGCGCAACAAACGAGAAAGAATCCCAGCAGAGAAAG
AGTTTTTTGTTTGTGAACGAGAGGTTCGAGGACATGACGTTGAAACTTTG
CCTACACACAAAAAGCGTACAAAGAAGAAAAGGGTGTTGGTGAGAGGGGC
TGGGTTAGAGGCTCAAGAATACACTACCACTGGCACCCCATCAACTAGCA
TTTCTGCCTTGCAGTCCCTGGTGTCAACTCTTAGCTCATCAGAGCAACCA
GAACTACAAGCTGCGTGTTCGGCAATCAATGGAAAGCTGAGGGCTCAAAC
TTCAAGGCTAGCTGCACAAAATTTCGAGAAAAATGTAAAGAAGGTAGTGG
ATCCCGATGAACAAGTTAGAGTGAAGACAAAAACAGATTTTGAGAGAGGT
CGGCTTCAAAGGAGCGTCCCCTCAAGTGTTGTCGACGTGCTACGGGCCAA
AAAGGACCACGAAGTGCTGGTTCTGAACTTCGAAAATCTGAACCTCTGCG
CTTTGGCAGACCTCTCTGAGTGTGAGCGTCTGAAGAAAAGACTGCGGTTC
AACGATGGAGTGCATGCTTACCTCGCAAAAGAGTTTTCGAAAGAAATTTC
GCACGCCCTTTACAATGGCAGGTGTGTTCTGAAAGGGGAGGGTATTACAG
TTGAAAAGGCATTTCCAGAGAAGTTTCGTATGGCAAGGATGCTTGACGGC
TGCATGAGCAAGGGACCGAGAATAGAAATCGTCAAAAACGCGATGAAATG
TGACCAGGCTCGTGCATCGCAGCTTATAGACGGCTGGTTTAAGGTACATC
CCGCAGTAGAATCATGGTGCAAAGAGGAGTTGGGAAGAATGAGAGCCAAA
AAGGTAGCGCAAACAATACGCGGCAGACAAAGGGTGTTGAAAATCGGAAA
AGGGAAACGGAGTGTCTTTGTTCTAAATGAAGGGCTGACTTTCGCAATTG
AAGGATCTGTCGGGGATTTCATGATGCAGAGCTTACTGAAAATCGCGCAG
AGCGAGAGAATCAACGCCCTCGCGTGGCGAGCAATGTTCGCCGATGCCAA
CAGAATTGTGCTCCACGGGCCGAGCTGGTCAACTGAAGAAGCTGTCCCAG
CTGTGATAGACACGCTGGCGTCTCCAAATGGCGGAGGTCCAATCTTAGAA
AGCGCTCTGCATCAGTTGGGGATCCTTTGTGGAGAGAGTTTTCGAGCGCT
GCGAAGAGTAGCATAA

protein sequence of Gchil3490.t1

>Gchil3490.t1 ID=Gchil3490.t1|Name=Gchil3490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=722bp
MLSVRSGIGIRQRISVFRKTFASKALATSQEQNDFEGIHRKVSIVHDLRT
ASQSIEALLRLPEGTPVAWSTQALPPRASPAMVTMCGYAGDAFQGGAWTF
ICPSSTHEAAVWGLLREFFRDRIAKTVCFDIENFASHLYSRGIQADGCVH
DAQTLMRISGLKEKGFDSSVIDVLDKRTLSKRESMFGDQDRPWEAPSLEL
NCLSDEWVSSACADAHAIFHIYQRMRSKMLKNGLISAEAKNSFEAYEQFY
SQVERILPSLGKHAFFLDEVTHRNIMTGFEKDREYQQSIFDSWAQKYCDQ
ASQVDVTFSMLRHMLFAPCQNMRNKRERIPAEKEFFVCEREVRGHDVETL
PTHKKRTKKKRVLVRGAGLEAQEYTTTGTPSTSISALQSLVSTLSSSEQP
ELQAACSAINGKLRAQTSRLAAQNFEKNVKKVVDPDEQVRVKTKTDFERG
RLQRSVPSSVVDVLRAKKDHEVLVLNFENLNLCALADLSECERLKKRLRF
NDGVHAYLAKEFSKEISHALYNGRCVLKGEGITVEKAFPEKFRMARMLDG
CMSKGPRIEIVKNAMKCDQARASQLIDGWFKVHPAVESWCKEELGRMRAK
KVAQTIRGRQRVLKIGKGKRSVFVLNEGLTFAIEGSVGDFMMQSLLKIAQ
SERINALAWRAMFADANRIVLHGPSWSTEEAVPAVIDTLASPNGGGPILE
SALHQLGILCGESFRALRRVA*

mRNA from alignment at tig00004378_pilon:550617..552782+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3490.t1 ID=Gchil3490.t1|Name=Gchil3490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2166bp|location=Sequence derived from alignment at tig00004378_pilon:550617..552782+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTAGCGTGAGATCGGGGATTGGCATTCGTCAACGCATTTCTGTGTT
TCGAAAGACATTCGCTTCGAAAGCTTTAGCTACATCCCAAGAGCAAAACG
ATTTCGAAGGGATCCATCGAAAGGTTTCAATTGTGCATGACTTAAGAACG
GCCTCGCAATCGATAGAGGCTTTGCTTAGGTTACCAGAAGGCACACCCGT
GGCATGGAGCACTCAAGCCTTGCCTCCTCGAGCATCACCAGCTATGGTGA
CCATGTGCGGATATGCTGGCGACGCATTTCAGGGCGGAGCCTGGACATTT
ATATGCCCATCATCTACACATGAGGCTGCAGTATGGGGGCTCTTGCGTGA
GTTTTTTCGTGACAGGATAGCGAAGACCGTGTGTTTTGATATAGAAAATT
TCGCGAGCCATCTATATAGCAGGGGTATTCAGGCTGATGGATGCGTTCAT
GATGCCCAAACATTGATGCGCATCTCGGGACTTAAAGAAAAGGGCTTCGA
TTCCTCTGTTATAGACGTTCTCGATAAGCGTACATTGAGTAAGAGGGAAT
CCATGTTTGGTGATCAGGATCGACCTTGGGAGGCACCATCACTTGAACTA
AACTGTTTGAGTGATGAATGGGTTTCTTCTGCTTGTGCTGATGCACACGC
AATATTCCACATCTATCAAAGAATGAGATCAAAAATGCTCAAAAACGGTC
TGATTTCAGCAGAAGCAAAGAACAGCTTCGAAGCTTACGAACAGTTTTAT
TCCCAGGTTGAGAGAATTCTTCCCTCTCTTGGAAAACATGCATTTTTTCT
GGACGAGGTCACGCATCGTAATATTATGACGGGTTTCGAAAAAGATCGAG
AGTATCAGCAGTCTATCTTCGATAGCTGGGCTCAAAAGTACTGCGATCAA
GCATCACAAGTGGATGTGACCTTTTCCATGCTACGGCATATGCTATTCGC
CCCGTGCCAGAATATGCGCAACAAACGAGAAAGAATCCCAGCAGAGAAAG
AGTTTTTTGTTTGTGAACGAGAGGTTCGAGGACATGACGTTGAAACTTTG
CCTACACACAAAAAGCGTACAAAGAAGAAAAGGGTGTTGGTGAGAGGGGC
TGGGTTAGAGGCTCAAGAATACACTACCACTGGCACCCCATCAACTAGCA
TTTCTGCCTTGCAGTCCCTGGTGTCAACTCTTAGCTCATCAGAGCAACCA
GAACTACAAGCTGCGTGTTCGGCAATCAATGGAAAGCTGAGGGCTCAAAC
TTCAAGGCTAGCTGCACAAAATTTCGAGAAAAATGTAAAGAAGGTAGTGG
ATCCCGATGAACAAGTTAGAGTGAAGACAAAAACAGATTTTGAGAGAGGT
CGGCTTCAAAGGAGCGTCCCCTCAAGTGTTGTCGACGTGCTACGGGCCAA
AAAGGACCACGAAGTGCTGGTTCTGAACTTCGAAAATCTGAACCTCTGCG
CTTTGGCAGACCTCTCTGAGTGTGAGCGTCTGAAGAAAAGACTGCGGTTC
AACGATGGAGTGCATGCTTACCTCGCAAAAGAGTTTTCGAAAGAAATTTC
GCACGCCCTTTACAATGGCAGGTGTGTTCTGAAAGGGGAGGGTATTACAG
TTGAAAAGGCATTTCCAGAGAAGTTTCGTATGGCAAGGATGCTTGACGGC
TGCATGAGCAAGGGACCGAGAATAGAAATCGTCAAAAACGCGATGAAATG
TGACCAGGCTCGTGCATCGCAGCTTATAGACGGCTGGTTTAAGGTACATC
CCGCAGTAGAATCATGGTGCAAAGAGGAGTTGGGAAGAATGAGAGCCAAA
AAGGTAGCGCAAACAATACGCGGCAGACAAAGGGTGTTGAAAATCGGAAA
AGGGAAACGGAGTGTCTTTGTTCTAAATGAAGGGCTGACTTTCGCAATTG
AAGGATCTGTCGGGGATTTCATGATGCAGAGCTTACTGAAAATCGCGCAG
AGCGAGAGAATCAACGCCCTCGCGTGGCGAGCAATGTTCGCCGATGCCAA
CAGAATTGTGCTCCACGGGCCGAGCTGGTCAACTGAAGAAGCTGTCCCAG
CTGTGATAGACACGCTGGCGTCTCCAAATGGCGGAGGTCCAATCTTAGAA
AGCGCTCTGCATCAGTTGGGGATCCTTTGTGGAGAGAGTTTTCGAGCGCT
GCGAAGAGTAGCATAA

Coding sequence (CDS) from alignment at tig00004378_pilon:550617..552782+

>Gchil3490.t1 ID=Gchil3490.t1|Name=Gchil3490.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2166bp|location=Sequence derived from alignment at tig00004378_pilon:550617..552782+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTAGCGTGAGATCGGGGATTGGCATTCGTCAACGCATTTCTGTGTT
TCGAAAGACATTCGCTTCGAAAGCTTTAGCTACATCCCAAGAGCAAAACG
ATTTCGAAGGGATCCATCGAAAGGTTTCAATTGTGCATGACTTAAGAACG
GCCTCGCAATCGATAGAGGCTTTGCTTAGGTTACCAGAAGGCACACCCGT
GGCATGGAGCACTCAAGCCTTGCCTCCTCGAGCATCACCAGCTATGGTGA
CCATGTGCGGATATGCTGGCGACGCATTTCAGGGCGGAGCCTGGACATTT
ATATGCCCATCATCTACACATGAGGCTGCAGTATGGGGGCTCTTGCGTGA
GTTTTTTCGTGACAGGATAGCGAAGACCGTGTGTTTTGATATAGAAAATT
TCGCGAGCCATCTATATAGCAGGGGTATTCAGGCTGATGGATGCGTTCAT
GATGCCCAAACATTGATGCGCATCTCGGGACTTAAAGAAAAGGGCTTCGA
TTCCTCTGTTATAGACGTTCTCGATAAGCGTACATTGAGTAAGAGGGAAT
CCATGTTTGGTGATCAGGATCGACCTTGGGAGGCACCATCACTTGAACTA
AACTGTTTGAGTGATGAATGGGTTTCTTCTGCTTGTGCTGATGCACACGC
AATATTCCACATCTATCAAAGAATGAGATCAAAAATGCTCAAAAACGGTC
TGATTTCAGCAGAAGCAAAGAACAGCTTCGAAGCTTACGAACAGTTTTAT
TCCCAGGTTGAGAGAATTCTTCCCTCTCTTGGAAAACATGCATTTTTTCT
GGACGAGGTCACGCATCGTAATATTATGACGGGTTTCGAAAAAGATCGAG
AGTATCAGCAGTCTATCTTCGATAGCTGGGCTCAAAAGTACTGCGATCAA
GCATCACAAGTGGATGTGACCTTTTCCATGCTACGGCATATGCTATTCGC
CCCGTGCCAGAATATGCGCAACAAACGAGAAAGAATCCCAGCAGAGAAAG
AGTTTTTTGTTTGTGAACGAGAGGTTCGAGGACATGACGTTGAAACTTTG
CCTACACACAAAAAGCGTACAAAGAAGAAAAGGGTGTTGGTGAGAGGGGC
TGGGTTAGAGGCTCAAGAATACACTACCACTGGCACCCCATCAACTAGCA
TTTCTGCCTTGCAGTCCCTGGTGTCAACTCTTAGCTCATCAGAGCAACCA
GAACTACAAGCTGCGTGTTCGGCAATCAATGGAAAGCTGAGGGCTCAAAC
TTCAAGGCTAGCTGCACAAAATTTCGAGAAAAATGTAAAGAAGGTAGTGG
ATCCCGATGAACAAGTTAGAGTGAAGACAAAAACAGATTTTGAGAGAGGT
CGGCTTCAAAGGAGCGTCCCCTCAAGTGTTGTCGACGTGCTACGGGCCAA
AAAGGACCACGAAGTGCTGGTTCTGAACTTCGAAAATCTGAACCTCTGCG
CTTTGGCAGACCTCTCTGAGTGTGAGCGTCTGAAGAAAAGACTGCGGTTC
AACGATGGAGTGCATGCTTACCTCGCAAAAGAGTTTTCGAAAGAAATTTC
GCACGCCCTTTACAATGGCAGGTGTGTTCTGAAAGGGGAGGGTATTACAG
TTGAAAAGGCATTTCCAGAGAAGTTTCGTATGGCAAGGATGCTTGACGGC
TGCATGAGCAAGGGACCGAGAATAGAAATCGTCAAAAACGCGATGAAATG
TGACCAGGCTCGTGCATCGCAGCTTATAGACGGCTGGTTTAAGGTACATC
CCGCAGTAGAATCATGGTGCAAAGAGGAGTTGGGAAGAATGAGAGCCAAA
AAGGTAGCGCAAACAATACGCGGCAGACAAAGGGTGTTGAAAATCGGAAA
AGGGAAACGGAGTGTCTTTGTTCTAAATGAAGGGCTGACTTTCGCAATTG
AAGGATCTGTCGGGGATTTCATGATGCAGAGCTTACTGAAAATCGCGCAG
AGCGAGAGAATCAACGCCCTCGCGTGGCGAGCAATGTTCGCCGATGCCAA
CAGAATTGTGCTCCACGGGCCGAGCTGGTCAACTGAAGAAGCTGTCCCAG
CTGTGATAGACACGCTGGCGTCTCCAAATGGCGGAGGTCCAATCTTAGAA
AGCGCTCTGCATCAGTTGGGGATCCTTTGTGGAGAGAGTTTTCGAGCGCT
GCGAAGAGTAGCATAA