Gchil3530.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3530.t1
Unique NameGchil3530.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length452
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:930597..931952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706981.1
Preferred namePRO2
PFAMsAldedh
Max annot lvl2759|Eukaryota
KEGG rclassRC00684
KEGG koko:K00147
KEGG ReactionR03313
KEGG Pathwayko00330,ko00332,ko01100,ko01110,ko01130,ko01230,map00330,map00332,map01100,map01110,map01130,map01230
KEGG ModuleM00015
GOsGO:0003674,GO:0003824,GO:0004350,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006560,GO:0006561,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009064,GO:0009084,GO:0009987,GO:0016053,GO:0016491,GO:0016620,GO:0016903,GO:0018130,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0046483,GO:0055114,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Evalue2.82e-166
EggNOG OGsCOG0014@1|root,KOG4165@2759|Eukaryota
EC1.2.1.41
Descriptionglutamate-5-semialdehyde dehydrogenase activity
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3530Gchil3530Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 930597..931952 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3530.t1.stop1Gchil3530.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 930597..930599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3530.t1.CDS1Gchil3530.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 930597..931952 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3530.t1.exon1Gchil3530.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 930597..931952 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3530.t1.start1Gchil3530.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 931950..931952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3530.t1Gchil3530.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 930597..931952 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3530.t1 ID=Gchil3530.t1|Name=Gchil3530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=452bp
MNGSSTSKRSSIEVLALRARNASRAMLSLNTNDRNSALEAVHDHLLNAKD
EILAANESDKRAAQELLAKGSLTSSLVKRLDLGGKKFDAMLEGITSVGRL
PDPVGSCSLSRKLDDDLQLFRVACPIGVICIIFESRPEAAVQIASLSIKS
ANAVILKGGKEAEKSNAVLVQTIRSALQASNVPEDAVQLVATREEVRELL
DQSNYIDLIIPRGSNSLVRFISENTKIPVMGHADGICSIYVDAKADPMKA
KDIVVDAKAQYPAVCNAAETLLIHEDAVEDVLPIIGQGLADAEVSLRADE
RSKVVLEGIPGLNVERSSPEDYRTEFLELKMAVKVVASLSDAIDHINAHG
SGHTDCIVTEDCSSAQNFLAMVDSAGVYHNASTRFADGFRYGFGAEVGVS
THRTHARGPVGLEGLLIYKYKLKGSGHIVAPYASGEKRFQHEDTPHLLPP
F*
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spliced messenger RNA

>Gchil3530.t1 ID=Gchil3530.t1|Name=Gchil3530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00004378_pilon:930597..931952- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGCTCATCAACGTCAAAACGTTCCTCAATCGAGGTCCTTGCGCT
TCGCGCCAGAAATGCATCTCGGGCAATGCTTTCGCTAAATACAAATGACA
GAAACAGCGCACTAGAGGCTGTTCACGATCATTTGCTTAACGCCAAGGAT
GAAATTCTCGCCGCTAATGAAAGTGACAAGCGAGCAGCCCAGGAGCTTCT
CGCAAAAGGGTCTCTAACTTCTTCTTTGGTAAAAAGACTGGATCTCGGAG
GTAAGAAGTTCGATGCAATGCTGGAAGGTATCACTTCTGTTGGGCGCTTA
CCAGATCCAGTTGGATCATGTTCTCTTTCTCGGAAGCTCGATGACGACTT
ACAATTATTTCGGGTTGCATGTCCTATCGGAGTCATCTGCATTATATTCG
AGTCTCGTCCAGAGGCAGCGGTGCAAATTGCATCGCTATCTATTAAAAGC
GCCAATGCAGTCATTCTCAAGGGTGGAAAAGAAGCTGAGAAGAGCAACGC
AGTGCTTGTTCAAACCATTAGAAGCGCGCTCCAAGCGTCAAACGTTCCTG
AGGATGCTGTGCAGTTGGTAGCTACTCGAGAAGAAGTTCGAGAATTGTTG
GACCAATCAAATTACATAGACCTTATCATTCCTCGCGGTTCAAACAGTTT
AGTGAGATTCATTAGTGAAAACACCAAGATCCCTGTTATGGGCCACGCCG
ATGGAATATGTTCTATATACGTCGATGCAAAAGCTGATCCTATGAAAGCG
AAGGATATCGTGGTCGATGCCAAGGCACAATATCCTGCTGTGTGCAATGC
AGCTGAAACATTGCTTATTCACGAGGACGCTGTGGAAGATGTGCTACCCA
TTATCGGACAAGGACTTGCTGACGCAGAAGTGAGCTTGCGGGCGGATGAG
AGGTCTAAAGTAGTATTAGAGGGAATTCCGGGTCTAAATGTGGAGCGCTC
CTCTCCGGAAGACTACAGAACAGAATTCCTGGAACTGAAGATGGCCGTAA
AAGTTGTTGCGAGCTTGTCAGATGCCATCGATCATATAAACGCACATGGT
AGTGGACATACAGATTGCATCGTAACAGAAGACTGTTCTTCCGCGCAAAA
TTTTTTGGCAATGGTTGACTCAGCCGGAGTTTATCACAATGCATCCACGA
GATTTGCGGATGGATTTCGATACGGATTCGGGGCAGAGGTCGGAGTAAGT
ACTCACAGAACCCACGCGCGTGGTCCAGTTGGTCTTGAAGGGCTGTTGAT
TTACAAGTACAAGTTGAAAGGTAGTGGCCACATCGTAGCTCCGTATGCAA
GCGGTGAAAAGCGCTTCCAGCATGAAGACACGCCCCATCTTCTCCCTCCA
TTTTAG
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protein sequence of Gchil3530.t1

>Gchil3530.t1 ID=Gchil3530.t1|Name=Gchil3530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=452bp
MNGSSTSKRSSIEVLALRARNASRAMLSLNTNDRNSALEAVHDHLLNAKD
EILAANESDKRAAQELLAKGSLTSSLVKRLDLGGKKFDAMLEGITSVGRL
PDPVGSCSLSRKLDDDLQLFRVACPIGVICIIFESRPEAAVQIASLSIKS
ANAVILKGGKEAEKSNAVLVQTIRSALQASNVPEDAVQLVATREEVRELL
DQSNYIDLIIPRGSNSLVRFISENTKIPVMGHADGICSIYVDAKADPMKA
KDIVVDAKAQYPAVCNAAETLLIHEDAVEDVLPIIGQGLADAEVSLRADE
RSKVVLEGIPGLNVERSSPEDYRTEFLELKMAVKVVASLSDAIDHINAHG
SGHTDCIVTEDCSSAQNFLAMVDSAGVYHNASTRFADGFRYGFGAEVGVS
THRTHARGPVGLEGLLIYKYKLKGSGHIVAPYASGEKRFQHEDTPHLLPP
F*
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mRNA from alignment at tig00004378_pilon:930597..931952-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3530.t1 ID=Gchil3530.t1|Name=Gchil3530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00004378_pilon:930597..931952- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGGCTCATCAACGTCAAAACGTTCCTCAATCGAGGTCCTTGCGCT
TCGCGCCAGAAATGCATCTCGGGCAATGCTTTCGCTAAATACAAATGACA
GAAACAGCGCACTAGAGGCTGTTCACGATCATTTGCTTAACGCCAAGGAT
GAAATTCTCGCCGCTAATGAAAGTGACAAGCGAGCAGCCCAGGAGCTTCT
CGCAAAAGGGTCTCTAACTTCTTCTTTGGTAAAAAGACTGGATCTCGGAG
GTAAGAAGTTCGATGCAATGCTGGAAGGTATCACTTCTGTTGGGCGCTTA
CCAGATCCAGTTGGATCATGTTCTCTTTCTCGGAAGCTCGATGACGACTT
ACAATTATTTCGGGTTGCATGTCCTATCGGAGTCATCTGCATTATATTCG
AGTCTCGTCCAGAGGCAGCGGTGCAAATTGCATCGCTATCTATTAAAAGC
GCCAATGCAGTCATTCTCAAGGGTGGAAAAGAAGCTGAGAAGAGCAACGC
AGTGCTTGTTCAAACCATTAGAAGCGCGCTCCAAGCGTCAAACGTTCCTG
AGGATGCTGTGCAGTTGGTAGCTACTCGAGAAGAAGTTCGAGAATTGTTG
GACCAATCAAATTACATAGACCTTATCATTCCTCGCGGTTCAAACAGTTT
AGTGAGATTCATTAGTGAAAACACCAAGATCCCTGTTATGGGCCACGCCG
ATGGAATATGTTCTATATACGTCGATGCAAAAGCTGATCCTATGAAAGCG
AAGGATATCGTGGTCGATGCCAAGGCACAATATCCTGCTGTGTGCAATGC
AGCTGAAACATTGCTTATTCACGAGGACGCTGTGGAAGATGTGCTACCCA
TTATCGGACAAGGACTTGCTGACGCAGAAGTGAGCTTGCGGGCGGATGAG
AGGTCTAAAGTAGTATTAGAGGGAATTCCGGGTCTAAATGTGGAGCGCTC
CTCTCCGGAAGACTACAGAACAGAATTCCTGGAACTGAAGATGGCCGTAA
AAGTTGTTGCGAGCTTGTCAGATGCCATCGATCATATAAACGCACATGGT
AGTGGACATACAGATTGCATCGTAACAGAAGACTGTTCTTCCGCGCAAAA
TTTTTTGGCAATGGTTGACTCAGCCGGAGTTTATCACAATGCATCCACGA
GATTTGCGGATGGATTTCGATACGGATTCGGGGCAGAGGTCGGAGTAAGT
ACTCACAGAACCCACGCGCGTGGTCCAGTTGGTCTTGAAGGGCTGTTGAT
TTACAAGTACAAGTTGAAAGGTAGTGGCCACATCGTAGCTCCGTATGCAA
GCGGTGAAAAGCGCTTCCAGCATGAAGACACGCCCCATCTTCTCCCTCCA
TTTTAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:930597..931952-

>Gchil3530.t1 ID=Gchil3530.t1|Name=Gchil3530.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1356bp|location=Sequence derived from alignment at tig00004378_pilon:930597..931952- (Gracilaria chilensis NLEC103_M9 male)
ATGAACGGCTCATCAACGTCAAAACGTTCCTCAATCGAGGTCCTTGCGCT
TCGCGCCAGAAATGCATCTCGGGCAATGCTTTCGCTAAATACAAATGACA
GAAACAGCGCACTAGAGGCTGTTCACGATCATTTGCTTAACGCCAAGGAT
GAAATTCTCGCCGCTAATGAAAGTGACAAGCGAGCAGCCCAGGAGCTTCT
CGCAAAAGGGTCTCTAACTTCTTCTTTGGTAAAAAGACTGGATCTCGGAG
GTAAGAAGTTCGATGCAATGCTGGAAGGTATCACTTCTGTTGGGCGCTTA
CCAGATCCAGTTGGATCATGTTCTCTTTCTCGGAAGCTCGATGACGACTT
ACAATTATTTCGGGTTGCATGTCCTATCGGAGTCATCTGCATTATATTCG
AGTCTCGTCCAGAGGCAGCGGTGCAAATTGCATCGCTATCTATTAAAAGC
GCCAATGCAGTCATTCTCAAGGGTGGAAAAGAAGCTGAGAAGAGCAACGC
AGTGCTTGTTCAAACCATTAGAAGCGCGCTCCAAGCGTCAAACGTTCCTG
AGGATGCTGTGCAGTTGGTAGCTACTCGAGAAGAAGTTCGAGAATTGTTG
GACCAATCAAATTACATAGACCTTATCATTCCTCGCGGTTCAAACAGTTT
AGTGAGATTCATTAGTGAAAACACCAAGATCCCTGTTATGGGCCACGCCG
ATGGAATATGTTCTATATACGTCGATGCAAAAGCTGATCCTATGAAAGCG
AAGGATATCGTGGTCGATGCCAAGGCACAATATCCTGCTGTGTGCAATGC
AGCTGAAACATTGCTTATTCACGAGGACGCTGTGGAAGATGTGCTACCCA
TTATCGGACAAGGACTTGCTGACGCAGAAGTGAGCTTGCGGGCGGATGAG
AGGTCTAAAGTAGTATTAGAGGGAATTCCGGGTCTAAATGTGGAGCGCTC
CTCTCCGGAAGACTACAGAACAGAATTCCTGGAACTGAAGATGGCCGTAA
AAGTTGTTGCGAGCTTGTCAGATGCCATCGATCATATAAACGCACATGGT
AGTGGACATACAGATTGCATCGTAACAGAAGACTGTTCTTCCGCGCAAAA
TTTTTTGGCAATGGTTGACTCAGCCGGAGTTTATCACAATGCATCCACGA
GATTTGCGGATGGATTTCGATACGGATTCGGGGCAGAGGTCGGAGTAAGT
ACTCACAGAACCCACGCGCGTGGTCCAGTTGGTCTTGAAGGGCTGTTGAT
TTACAAGTACAAGTTGAAAGGTAGTGGCCACATCGTAGCTCCGTATGCAA
GCGGTGAAAAGCGCTTCCAGCATGAAGACACGCCCCATCTTCTCCCTCCA
TTTTAG
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