Gchil3958.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3958.t1
Unique Name	Gchil3958.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	609

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000010_pilon	contig	tig00000010_pilon:1785931..1787757 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3067.XP_002951402.1
PFAMs	PWWP,SET
Max annot lvl	3041\|Chlorophyta
Evalue	1.34e-58
EggNOG OGs	COG2940@1\|root,KOG1083@2759\|Eukaryota,388N2@33090\|Viridiplantae,34PB4@3041\|Chlorophyta
Description	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
COG category	B

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3958	Gchil3958	Gracilaria chilensis NLEC103_M9 male	gene	tig00000010_pilon 1785931..1787757 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3958.t1.start1	Gchil3958.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000010_pilon 1785931..1785933 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3958.t1.CDS1	Gchil3958.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000010_pilon 1785931..1787757 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3958.t1.exon1	Gchil3958.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000010_pilon 1785931..1787757 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3958.t1.stop1	Gchil3958.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000010_pilon 1787755..1787757 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3958.t1	Gchil3958.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000010_pilon 1785931..1787757 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000010_pilon:1785931..1787757+
coding sequence from alignment at tig00000010_pilon:1785931..1787757+

mRNA sequence

>Gchil3958.t1 ID=Gchil3958.t1|Name=Gchil3958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=609bp
MGANNDLSTPALLKIAPVASELGIVWTKIKGHPFWPAQKVPMSAQLEQQD
RFQRAAKFRRRVDDTCVMYFGTCEVAYVNVAKSCISWQQGIQRNMHLSLR
GRAVFQRALSEVKAFCHRVQRFPRGWWCEPEVMALYHQFYDQCLSSELHL
RLREYIQRAESELIFWAKGRRHPHWPVQVLPRNMAAERYPQLKLTADSSS
MSSSMPCMFFGTGEVAMINEKNFTPFGAGLARGYVTSCERRDYTVALGEL
WGYLQQPRVWPSGYVSKRSWWNYEDMIAAPNPNDSGDFHVPHLPHYEHIK
KSVWWQGIEPPPKPRRSDMSCCDCEPVGEATCDDAGCLNFASRFLCNPLT
CKAGHKCGNSSFHRRKLPKLRPFFTADQRGWGLKAEEPIAKGSFVVEYIG
EIIDRNMLEKRLKDAQRLKSHEYYIMDLTNDLFVDAKFKGNLSRFINSSC
DPNCATQKWTDSVTGQTHVGIFAKQNIPAGTELTYNYCFEDFGLHGKSQK
RSFMCQCGTSSCCMLDPEEKKQMKLLIGKRLEVRWDDGWYPGIVESYSLK
KKKFRVQYDDGDCEDLTLGLKTGVDDNVKFRLMEPPSDGESSKCSKSSKG
SKKSKEGE*

spliced messenger RNA

>Gchil3958.t1 ID=Gchil3958.t1|Name=Gchil3958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at tig00000010_pilon:1785931..1787757+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGCCAACAACGACCTCAGCACCCCCGCGCTGCTCAAGATAGCGCC
CGTCGCCAGCGAGCTCGGCATCGTTTGGACCAAGATCAAGGGCCACCCCT
TCTGGCCCGCCCAAAAGGTTCCCATGTCCGCCCAGCTCGAGCAGCAGGAT
CGCTTTCAACGCGCCGCCAAGTTCCGTCGCAGAGTCGATGACACCTGCGT
CATGTACTTTGGCACTTGTGAGGTCGCCTATGTCAACGTCGCAAAGTCCT
GCATCTCTTGGCAGCAGGGCATTCAACGCAACATGCATCTCTCCCTCAGA
GGCCGCGCCGTTTTCCAGCGAGCGCTCAGCGAAGTCAAGGCCTTCTGCCA
TCGTGTTCAGCGCTTTCCGCGCGGCTGGTGGTGCGAGCCCGAGGTCATGG
CGCTTTACCACCAATTCTACGACCAATGCCTCTCCTCGGAGCTTCACCTT
CGCCTGCGAGAGTACATCCAACGCGCCGAATCCGAGCTCATCTTCTGGGC
CAAAGGCCGCCGACATCCGCACTGGCCGGTGCAGGTTTTGCCGCGAAACA
TGGCCGCCGAGCGATATCCGCAGCTCAAGCTCACCGCAGACAGCAGCTCA
ATGTCCAGTTCTATGCCGTGTATGTTCTTCGGCACTGGAGAGGTTGCCAT
GATCAACGAAAAGAACTTCACGCCCTTTGGCGCGGGCCTTGCGCGCGGCT
ACGTTACTAGCTGTGAACGTCGAGATTATACTGTTGCGCTTGGCGAGTTG
TGGGGCTATCTTCAGCAACCGCGTGTATGGCCAAGCGGGTATGTCAGCAA
GCGCTCGTGGTGGAATTACGAGGACATGATAGCCGCGCCCAACCCAAACG
ATTCTGGTGACTTTCACGTGCCCCATCTTCCGCACTATGAACATATCAAA
AAGTCCGTGTGGTGGCAAGGCATAGAACCTCCCCCAAAACCACGGCGCTC
CGACATGTCGTGCTGTGATTGTGAGCCTGTCGGGGAGGCCACCTGCGACG
ACGCGGGCTGCCTTAATTTTGCCTCCCGCTTCTTGTGCAACCCGTTGACA
TGCAAGGCCGGACACAAGTGCGGCAATTCCAGCTTTCACCGGCGAAAGCT
GCCAAAACTGAGGCCGTTTTTCACAGCCGACCAACGCGGGTGGGGTCTCA
AGGCGGAGGAACCGATCGCCAAAGGCTCGTTTGTCGTCGAATATATTGGC
GAAATTATTGATCGAAACATGCTTGAGAAGAGACTCAAAGACGCCCAGAG
GCTGAAGAGCCATGAGTACTACATCATGGACCTCACCAATGATCTATTTG
TAGATGCCAAGTTCAAGGGCAATCTTTCTCGTTTTATCAACTCTAGTTGC
GATCCTAATTGCGCCACTCAGAAGTGGACCGACTCAGTGACAGGTCAAAC
TCATGTCGGTATTTTTGCCAAGCAGAACATTCCTGCTGGTACGGAACTAA
CGTATAACTACTGCTTTGAAGATTTTGGTTTACATGGGAAAAGCCAGAAG
CGCTCCTTCATGTGTCAGTGTGGCACTAGCTCGTGCTGTATGCTGGACCC
AGAAGAGAAGAAACAAATGAAACTGCTCATTGGGAAGAGACTGGAAGTTC
GGTGGGATGACGGGTGGTATCCTGGGATTGTAGAATCGTATAGTTTGAAG
AAGAAGAAATTCCGAGTGCAGTATGATGACGGGGACTGTGAGGACCTTAC
GCTCGGTTTGAAAACTGGTGTGGACGACAACGTCAAGTTTCGTCTTATGG
AACCGCCATCTGATGGGGAAAGCAGCAAGTGTAGCAAGAGCAGCAAGGGA
AGCAAGAAATCGAAGGAAGGAGAATGA

protein sequence of Gchil3958.t1

>Gchil3958.t1 ID=Gchil3958.t1|Name=Gchil3958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=609bp
MGANNDLSTPALLKIAPVASELGIVWTKIKGHPFWPAQKVPMSAQLEQQD
RFQRAAKFRRRVDDTCVMYFGTCEVAYVNVAKSCISWQQGIQRNMHLSLR
GRAVFQRALSEVKAFCHRVQRFPRGWWCEPEVMALYHQFYDQCLSSELHL
RLREYIQRAESELIFWAKGRRHPHWPVQVLPRNMAAERYPQLKLTADSSS
MSSSMPCMFFGTGEVAMINEKNFTPFGAGLARGYVTSCERRDYTVALGEL
WGYLQQPRVWPSGYVSKRSWWNYEDMIAAPNPNDSGDFHVPHLPHYEHIK
KSVWWQGIEPPPKPRRSDMSCCDCEPVGEATCDDAGCLNFASRFLCNPLT
CKAGHKCGNSSFHRRKLPKLRPFFTADQRGWGLKAEEPIAKGSFVVEYIG
EIIDRNMLEKRLKDAQRLKSHEYYIMDLTNDLFVDAKFKGNLSRFINSSC
DPNCATQKWTDSVTGQTHVGIFAKQNIPAGTELTYNYCFEDFGLHGKSQK
RSFMCQCGTSSCCMLDPEEKKQMKLLIGKRLEVRWDDGWYPGIVESYSLK
KKKFRVQYDDGDCEDLTLGLKTGVDDNVKFRLMEPPSDGESSKCSKSSKG
SKKSKEGE*

mRNA from alignment at tig00000010_pilon:1785931..1787757+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3958.t1 ID=Gchil3958.t1|Name=Gchil3958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1827bp|location=Sequence derived from alignment at tig00000010_pilon:1785931..1787757+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCCAACAACGACCTCAGCACCCCCGCGCTGCTCAAGATAGCGCC
CGTCGCCAGCGAGCTCGGCATCGTTTGGACCAAGATCAAGGGCCACCCCT
TCTGGCCCGCCCAAAAGGTTCCCATGTCCGCCCAGCTCGAGCAGCAGGAT
CGCTTTCAACGCGCCGCCAAGTTCCGTCGCAGAGTCGATGACACCTGCGT
CATGTACTTTGGCACTTGTGAGGTCGCCTATGTCAACGTCGCAAAGTCCT
GCATCTCTTGGCAGCAGGGCATTCAACGCAACATGCATCTCTCCCTCAGA
GGCCGCGCCGTTTTCCAGCGAGCGCTCAGCGAAGTCAAGGCCTTCTGCCA
TCGTGTTCAGCGCTTTCCGCGCGGCTGGTGGTGCGAGCCCGAGGTCATGG
CGCTTTACCACCAATTCTACGACCAATGCCTCTCCTCGGAGCTTCACCTT
CGCCTGCGAGAGTACATCCAACGCGCCGAATCCGAGCTCATCTTCTGGGC
CAAAGGCCGCCGACATCCGCACTGGCCGGTGCAGGTTTTGCCGCGAAACA
TGGCCGCCGAGCGATATCCGCAGCTCAAGCTCACCGCAGACAGCAGCTCA
ATGTCCAGTTCTATGCCGTGTATGTTCTTCGGCACTGGAGAGGTTGCCAT
GATCAACGAAAAGAACTTCACGCCCTTTGGCGCGGGCCTTGCGCGCGGCT
ACGTTACTAGCTGTGAACGTCGAGATTATACTGTTGCGCTTGGCGAGTTG
TGGGGCTATCTTCAGCAACCGCGTGTATGGCCAAGCGGGTATGTCAGCAA
GCGCTCGTGGTGGAATTACGAGGACATGATAGCCGCGCCCAACCCAAACG
ATTCTGGTGACTTTCACGTGCCCCATCTTCCGCACTATGAACATATCAAA
AAGTCCGTGTGGTGGCAAGGCATAGAACCTCCCCCAAAACCACGGCGCTC
CGACATGTCGTGCTGTGATTGTGAGCCTGTCGGGGAGGCCACCTGCGACG
ACGCGGGCTGCCTTAATTTTGCCTCCCGCTTCTTGTGCAACCCGTTGACA
TGCAAGGCCGGACACAAGTGCGGCAATTCCAGCTTTCACCGGCGAAAGCT
GCCAAAACTGAGGCCGTTTTTCACAGCCGACCAACGCGGGTGGGGTCTCA
AGGCGGAGGAACCGATCGCCAAAGGCTCGTTTGTCGTCGAATATATTGGC
GAAATTATTGATCGAAACATGCTTGAGAAGAGACTCAAAGACGCCCAGAG
GCTGAAGAGCCATGAGTACTACATCATGGACCTCACCAATGATCTATTTG
TAGATGCCAAGTTCAAGGGCAATCTTTCTCGTTTTATCAACTCTAGTTGC
GATCCTAATTGCGCCACTCAGAAGTGGACCGACTCAGTGACAGGTCAAAC
TCATGTCGGTATTTTTGCCAAGCAGAACATTCCTGCTGGTACGGAACTAA
CGTATAACTACTGCTTTGAAGATTTTGGTTTACATGGGAAAAGCCAGAAG
CGCTCCTTCATGTGTCAGTGTGGCACTAGCTCGTGCTGTATGCTGGACCC
AGAAGAGAAGAAACAAATGAAACTGCTCATTGGGAAGAGACTGGAAGTTC
GGTGGGATGACGGGTGGTATCCTGGGATTGTAGAATCGTATAGTTTGAAG
AAGAAGAAATTCCGAGTGCAGTATGATGACGGGGACTGTGAGGACCTTAC
GCTCGGTTTGAAAACTGGTGTGGACGACAACGTCAAGTTTCGTCTTATGG
AACCGCCATCTGATGGGGAAAGCAGCAAGTGTAGCAAGAGCAGCAAGGGA
AGCAAGAAATCGAAGGAAGGAGAATGA

Coding sequence (CDS) from alignment at tig00000010_pilon:1785931..1787757+

>Gchil3958.t1 ID=Gchil3958.t1|Name=Gchil3958.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1827bp|location=Sequence derived from alignment at tig00000010_pilon:1785931..1787757+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCGCCAACAACGACCTCAGCACCCCCGCGCTGCTCAAGATAGCGCC
CGTCGCCAGCGAGCTCGGCATCGTTTGGACCAAGATCAAGGGCCACCCCT
TCTGGCCCGCCCAAAAGGTTCCCATGTCCGCCCAGCTCGAGCAGCAGGAT
CGCTTTCAACGCGCCGCCAAGTTCCGTCGCAGAGTCGATGACACCTGCGT
CATGTACTTTGGCACTTGTGAGGTCGCCTATGTCAACGTCGCAAAGTCCT
GCATCTCTTGGCAGCAGGGCATTCAACGCAACATGCATCTCTCCCTCAGA
GGCCGCGCCGTTTTCCAGCGAGCGCTCAGCGAAGTCAAGGCCTTCTGCCA
TCGTGTTCAGCGCTTTCCGCGCGGCTGGTGGTGCGAGCCCGAGGTCATGG
CGCTTTACCACCAATTCTACGACCAATGCCTCTCCTCGGAGCTTCACCTT
CGCCTGCGAGAGTACATCCAACGCGCCGAATCCGAGCTCATCTTCTGGGC
CAAAGGCCGCCGACATCCGCACTGGCCGGTGCAGGTTTTGCCGCGAAACA
TGGCCGCCGAGCGATATCCGCAGCTCAAGCTCACCGCAGACAGCAGCTCA
ATGTCCAGTTCTATGCCGTGTATGTTCTTCGGCACTGGAGAGGTTGCCAT
GATCAACGAAAAGAACTTCACGCCCTTTGGCGCGGGCCTTGCGCGCGGCT
ACGTTACTAGCTGTGAACGTCGAGATTATACTGTTGCGCTTGGCGAGTTG
TGGGGCTATCTTCAGCAACCGCGTGTATGGCCAAGCGGGTATGTCAGCAA
GCGCTCGTGGTGGAATTACGAGGACATGATAGCCGCGCCCAACCCAAACG
ATTCTGGTGACTTTCACGTGCCCCATCTTCCGCACTATGAACATATCAAA
AAGTCCGTGTGGTGGCAAGGCATAGAACCTCCCCCAAAACCACGGCGCTC
CGACATGTCGTGCTGTGATTGTGAGCCTGTCGGGGAGGCCACCTGCGACG
ACGCGGGCTGCCTTAATTTTGCCTCCCGCTTCTTGTGCAACCCGTTGACA
TGCAAGGCCGGACACAAGTGCGGCAATTCCAGCTTTCACCGGCGAAAGCT
GCCAAAACTGAGGCCGTTTTTCACAGCCGACCAACGCGGGTGGGGTCTCA
AGGCGGAGGAACCGATCGCCAAAGGCTCGTTTGTCGTCGAATATATTGGC
GAAATTATTGATCGAAACATGCTTGAGAAGAGACTCAAAGACGCCCAGAG
GCTGAAGAGCCATGAGTACTACATCATGGACCTCACCAATGATCTATTTG
TAGATGCCAAGTTCAAGGGCAATCTTTCTCGTTTTATCAACTCTAGTTGC
GATCCTAATTGCGCCACTCAGAAGTGGACCGACTCAGTGACAGGTCAAAC
TCATGTCGGTATTTTTGCCAAGCAGAACATTCCTGCTGGTACGGAACTAA
CGTATAACTACTGCTTTGAAGATTTTGGTTTACATGGGAAAAGCCAGAAG
CGCTCCTTCATGTGTCAGTGTGGCACTAGCTCGTGCTGTATGCTGGACCC
AGAAGAGAAGAAACAAATGAAACTGCTCATTGGGAAGAGACTGGAAGTTC
GGTGGGATGACGGGTGGTATCCTGGGATTGTAGAATCGTATAGTTTGAAG
AAGAAGAAATTCCGAGTGCAGTATGATGACGGGGACTGTGAGGACCTTAC
GCTCGGTTTGAAAACTGGTGTGGACGACAACGTCAAGTTTCGTCTTATGG
AACCGCCATCTGATGGGGAAAGCAGCAAGTGTAGCAAGAGCAGCAAGGGA
AGCAAGAAATCGAAGGAAGGAGAATGA