Gchil3584.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3584.t1
Unique Name	Gchil3584.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	491

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:1672912..1674384 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	572477.Alvin_1138
Preferred name	hisH
PFAMs	GATase,His_biosynth
Max annot lvl	135613\|Chromatiales
KEGG rclass	RC00010,RC01190,RC01943
KEGG ko	ko:K01663
KEGG Reaction	R04558
KEGG Pathway	ko00340,ko01100,ko01110,ko01230,map00340,map01100,map01110,map01230
KEGG Module	M00026
Evalue	9.26e-177
EggNOG OGs	COG0107@1\|root,COG0118@1\|root,COG0107@2\|Bacteria,COG0118@2\|Bacteria,1MUS0@1224\|Proteobacteria,1RPJQ@1236\|Gammaproteobacteria,1X28P@135613\|Chromatiales
Description	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3584	Gchil3584	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 1672912..1674384 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3584.t1.start1	Gchil3584.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 1672912..1672914 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3584.t1.CDS1	Gchil3584.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 1672912..1674384 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3584.t1.exon1	Gchil3584.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 1672912..1674384 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3584.t1.stop1	Gchil3584.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 1674382..1674384 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3584.t1	Gchil3584.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 1672912..1674384 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:1672912..1674384+
coding sequence from alignment at tig00004378_pilon:1672912..1674384+

mRNA sequence

>Gchil3584.t1 ID=Gchil3584.t1|Name=Gchil3584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=491bp
MRNLRQRGFDDALRDYLADDRPFLGICLGLHTLFDASDESPAHRGLGVLP
GRVRRFCAQRMGALTVPHIGWNTVAVDPHRPLHLLPPHHPFNRFYFVHSF
CVDEPTAAALPHDVHVALTTHGERFVSVLQRGQLCATQFHPEKSGPAGLD
LLRRFVHPDSPSRARAPVPTASASASASGLAKRVVACLDVRENDAGDLVV
TKGDQYDVRDRSDNNVRNLGKPVQLARRYFEDGADEICFLNITSFRGEPV
SEAPMLEVLQRTSREVFVPLCVGGGIRDYTDAQGHSHSALDVAATYFRAG
ADKISVGSDAVYAAERFWKAGGVADGTSSIERISHVYGAQAVVVSVDARR
VFVQHDHDSDTTPFRIVRLPDGRRCWYQCTVKGGREGRDIDVVQLVTAVE
RLGAGEILLNCVDADGQGHGFDLTLIALVKAAVHIPVIASSGAGCPEHFT
KCFDVTGAEAALAAGIFHRGEVRIADVKAHMSAHGTPVRL*

spliced messenger RNA

>Gchil3584.t1 ID=Gchil3584.t1|Name=Gchil3584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00004378_pilon:1672912..1674384+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAACCTCCGTCAGCGCGGCTTCGACGATGCGCTGCGCGACTATCT
CGCCGACGACCGTCCGTTTTTGGGCATTTGTCTCGGCCTGCACACCCTCT
TCGACGCCTCCGACGAGTCGCCCGCCCACCGCGGCCTCGGCGTGCTGCCC
GGTCGCGTGCGCCGCTTCTGCGCCCAGCGCATGGGCGCCCTCACCGTCCC
GCACATCGGCTGGAATACCGTCGCCGTCGACCCCCACCGTCCACTTCACT
TGCTTCCTCCGCATCACCCATTCAACCGCTTCTACTTTGTGCACTCCTTC
TGCGTCGATGAGCCCACTGCCGCCGCCCTGCCCCACGACGTGCACGTCGC
CCTCACCACCCACGGCGAGCGCTTCGTGTCCGTCTTGCAGCGCGGCCAGC
TATGTGCCACCCAGTTCCACCCCGAGAAGTCCGGCCCCGCCGGTCTCGAC
CTGCTACGCCGCTTCGTCCACCCTGACAGTCCATcccgcgcccgcgcccc
cgtccccaccgcctccgcctccgcctccgccAGCGGGCTCGCCAAGCGCG
TCGTCGCCTGCCTCGACGTGCGCGAGAACGATGCGGGCGACCTCGTCGTC
ACCAAGGGCGATCAATATGACGTGCGCGATCGCTCCGACAACAATGTGCG
CAACCTGGGAAAACCCGTGCAACTGGCGCGTCGTTACTTTGAAGACGGAG
CTGACGAGATTTGCTTCCTCAACATCACCTCCTTTCGTGGCGAGCCCGTG
TCCGAGGCGCCCATGTTAGAGGTTTTGCAACGAACCTCGCGCGAGGTCTT
TGTACCGCTGTGCGTGGGCGGTGGTATTCGTGACTACACCGACGCTCAAG
GTCACTCGCACTCGGCGCTTGACGTGGCTGCAACTTACTTTCGCGCCGGC
GCCGATAAGATCAGTGTTGGCAGCGATGCCGTGTATGCCGCCGAGCGTTT
CTGGAAGGCGGGTGGCGTTGCCGACGGCACCTCTTCCATCGAGCGTATCT
CGCATGTGTACGGCGCCCAAGCCGTCGTCGTGTCCGTCGATGCGCGCCGC
GTATTCGTCCAACACGATCACGACTCCGACACCACCCCGTTCCGCATCGT
ACGTCTGCCGGACGGCCGTCGCTGTTGGTACCAATGCACCGTCAAGGGCG
GCCGCGAGGGCCGTGACATCGATGTCGTGCAGCTCGTCACCGCCGTGGAG
CGACTCGGCGCCGGCGAAATCCTGCTCAATTGCGTGGACGCCGACGGGCA
AGGTCACGGTTTTGACCTCACCCTCATCGCCCTCGTCAAAGCTGCCGTGC
ACATCCCCGTCATCGCCAGCTCGGGCGCCGGCTGTCCGGAACACTTTACA
AAATGTTTCGATGTCACCGGTGCAGAGGCTGCCCTCGCCGCCGGCATCTT
CCACCGCGGCGAGGTGCGCATTGCTGACGTCAAGGCGCACATGTCCGCCC
ATGGCACCCCCGTCCGCTTGTAG

protein sequence of Gchil3584.t1

>Gchil3584.t1 ID=Gchil3584.t1|Name=Gchil3584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=491bp
MRNLRQRGFDDALRDYLADDRPFLGICLGLHTLFDASDESPAHRGLGVLP
GRVRRFCAQRMGALTVPHIGWNTVAVDPHRPLHLLPPHHPFNRFYFVHSF
CVDEPTAAALPHDVHVALTTHGERFVSVLQRGQLCATQFHPEKSGPAGLD
LLRRFVHPDSPSRARAPVPTASASASASGLAKRVVACLDVRENDAGDLVV
TKGDQYDVRDRSDNNVRNLGKPVQLARRYFEDGADEICFLNITSFRGEPV
SEAPMLEVLQRTSREVFVPLCVGGGIRDYTDAQGHSHSALDVAATYFRAG
ADKISVGSDAVYAAERFWKAGGVADGTSSIERISHVYGAQAVVVSVDARR
VFVQHDHDSDTTPFRIVRLPDGRRCWYQCTVKGGREGRDIDVVQLVTAVE
RLGAGEILLNCVDADGQGHGFDLTLIALVKAAVHIPVIASSGAGCPEHFT
KCFDVTGAEAALAAGIFHRGEVRIADVKAHMSAHGTPVRL*

mRNA from alignment at tig00004378_pilon:1672912..1674384+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3584.t1 ID=Gchil3584.t1|Name=Gchil3584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00004378_pilon:1672912..1674384+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCAACCTCCGTCAGCGCGGCTTCGACGATGCGCTGCGCGACTATCT
CGCCGACGACCGTCCGTTTTTGGGCATTTGTCTCGGCCTGCACACCCTCT
TCGACGCCTCCGACGAGTCGCCCGCCCACCGCGGCCTCGGCGTGCTGCCC
GGTCGCGTGCGCCGCTTCTGCGCCCAGCGCATGGGCGCCCTCACCGTCCC
GCACATCGGCTGGAATACCGTCGCCGTCGACCCCCACCGTCCACTTCACT
TGCTTCCTCCGCATCACCCATTCAACCGCTTCTACTTTGTGCACTCCTTC
TGCGTCGATGAGCCCACTGCCGCCGCCCTGCCCCACGACGTGCACGTCGC
CCTCACCACCCACGGCGAGCGCTTCGTGTCCGTCTTGCAGCGCGGCCAGC
TATGTGCCACCCAGTTCCACCCCGAGAAGTCCGGCCCCGCCGGTCTCGAC
CTGCTACGCCGCTTCGTCCACCCTGACAGTCCATcccgcgcccgcgcccc
cgtccccaccgcctccgcctccgcctccgccAGCGGGCTCGCCAAGCGCG
TCGTCGCCTGCCTCGACGTGCGCGAGAACGATGCGGGCGACCTCGTCGTC
ACCAAGGGCGATCAATATGACGTGCGCGATCGCTCCGACAACAATGTGCG
CAACCTGGGAAAACCCGTGCAACTGGCGCGTCGTTACTTTGAAGACGGAG
CTGACGAGATTTGCTTCCTCAACATCACCTCCTTTCGTGGCGAGCCCGTG
TCCGAGGCGCCCATGTTAGAGGTTTTGCAACGAACCTCGCGCGAGGTCTT
TGTACCGCTGTGCGTGGGCGGTGGTATTCGTGACTACACCGACGCTCAAG
GTCACTCGCACTCGGCGCTTGACGTGGCTGCAACTTACTTTCGCGCCGGC
GCCGATAAGATCAGTGTTGGCAGCGATGCCGTGTATGCCGCCGAGCGTTT
CTGGAAGGCGGGTGGCGTTGCCGACGGCACCTCTTCCATCGAGCGTATCT
CGCATGTGTACGGCGCCCAAGCCGTCGTCGTGTCCGTCGATGCGCGCCGC
GTATTCGTCCAACACGATCACGACTCCGACACCACCCCGTTCCGCATCGT
ACGTCTGCCGGACGGCCGTCGCTGTTGGTACCAATGCACCGTCAAGGGCG
GCCGCGAGGGCCGTGACATCGATGTCGTGCAGCTCGTCACCGCCGTGGAG
CGACTCGGCGCCGGCGAAATCCTGCTCAATTGCGTGGACGCCGACGGGCA
AGGTCACGGTTTTGACCTCACCCTCATCGCCCTCGTCAAAGCTGCCGTGC
ACATCCCCGTCATCGCCAGCTCGGGCGCCGGCTGTCCGGAACACTTTACA
AAATGTTTCGATGTCACCGGTGCAGAGGCTGCCCTCGCCGCCGGCATCTT
CCACCGCGGCGAGGTGCGCATTGCTGACGTCAAGGCGCACATGTCCGCCC
ATGGCACCCCCGTCCGCTTGTAG

Coding sequence (CDS) from alignment at tig00004378_pilon:1672912..1674384+

>Gchil3584.t1 ID=Gchil3584.t1|Name=Gchil3584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1473bp|location=Sequence derived from alignment at tig00004378_pilon:1672912..1674384+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCAACCTCCGTCAGCGCGGCTTCGACGATGCGCTGCGCGACTATCT
CGCCGACGACCGTCCGTTTTTGGGCATTTGTCTCGGCCTGCACACCCTCT
TCGACGCCTCCGACGAGTCGCCCGCCCACCGCGGCCTCGGCGTGCTGCCC
GGTCGCGTGCGCCGCTTCTGCGCCCAGCGCATGGGCGCCCTCACCGTCCC
GCACATCGGCTGGAATACCGTCGCCGTCGACCCCCACCGTCCACTTCACT
TGCTTCCTCCGCATCACCCATTCAACCGCTTCTACTTTGTGCACTCCTTC
TGCGTCGATGAGCCCACTGCCGCCGCCCTGCCCCACGACGTGCACGTCGC
CCTCACCACCCACGGCGAGCGCTTCGTGTCCGTCTTGCAGCGCGGCCAGC
TATGTGCCACCCAGTTCCACCCCGAGAAGTCCGGCCCCGCCGGTCTCGAC
CTGCTACGCCGCTTCGTCCACCCTGACAGTCCATcccgcgcccgcgcccc
cgtccccaccgcctccgcctccgcctccgccAGCGGGCTCGCCAAGCGCG
TCGTCGCCTGCCTCGACGTGCGCGAGAACGATGCGGGCGACCTCGTCGTC
ACCAAGGGCGATCAATATGACGTGCGCGATCGCTCCGACAACAATGTGCG
CAACCTGGGAAAACCCGTGCAACTGGCGCGTCGTTACTTTGAAGACGGAG
CTGACGAGATTTGCTTCCTCAACATCACCTCCTTTCGTGGCGAGCCCGTG
TCCGAGGCGCCCATGTTAGAGGTTTTGCAACGAACCTCGCGCGAGGTCTT
TGTACCGCTGTGCGTGGGCGGTGGTATTCGTGACTACACCGACGCTCAAG
GTCACTCGCACTCGGCGCTTGACGTGGCTGCAACTTACTTTCGCGCCGGC
GCCGATAAGATCAGTGTTGGCAGCGATGCCGTGTATGCCGCCGAGCGTTT
CTGGAAGGCGGGTGGCGTTGCCGACGGCACCTCTTCCATCGAGCGTATCT
CGCATGTGTACGGCGCCCAAGCCGTCGTCGTGTCCGTCGATGCGCGCCGC
GTATTCGTCCAACACGATCACGACTCCGACACCACCCCGTTCCGCATCGT
ACGTCTGCCGGACGGCCGTCGCTGTTGGTACCAATGCACCGTCAAGGGCG
GCCGCGAGGGCCGTGACATCGATGTCGTGCAGCTCGTCACCGCCGTGGAG
CGACTCGGCGCCGGCGAAATCCTGCTCAATTGCGTGGACGCCGACGGGCA
AGGTCACGGTTTTGACCTCACCCTCATCGCCCTCGTCAAAGCTGCCGTGC
ACATCCCCGTCATCGCCAGCTCGGGCGCCGGCTGTCCGGAACACTTTACA
AAATGTTTCGATGTCACCGGTGCAGAGGCTGCCCTCGCCGCCGGCATCTT
CCACCGCGGCGAGGTGCGCATTGCTGACGTCAAGGCGCACATGTCCGCCC
ATGGCACCCCCGTCCGCTTGTAG