Gchil3456.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3456.t1
Unique Name	Gchil3456.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	541

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004378_pilon	contig	tig00004378_pilon:239636..241258 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703729.1
Preferred name	BRF1
PFAMs	BRF1,TFIIB,TF_Zn_Ribbon
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15196
GOs	GO:0000126,GO:0000976,GO:0000992,GO:0000994,GO:0000995,GO:0001006,GO:0001016,GO:0001025,GO:0001032,GO:0001067,GO:0001112,GO:0001120,GO:0001156,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006359,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032091,GO:0032196,GO:0032774,GO:0032991,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043487,GO:0043488,GO:0043496,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045945,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061013,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070063,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090074,GO:0090304,GO:0090576,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
Evalue	4.49e-101
EggNOG OGs	COG1405@1\|root,KOG1598@2759\|Eukaryota
Description	RNA polymerase III type 3 promoter DNA binding
COG category	K
BRITE	ko00000,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3456	Gchil3456	Gracilaria chilensis NLEC103_M9 male	gene	tig00004378_pilon 239636..241258 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3456.t1.start1	Gchil3456.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004378_pilon 239636..239638 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3456.t1.CDS1	Gchil3456.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004378_pilon 239636..241258 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3456.t1.exon1	Gchil3456.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004378_pilon 239636..241258 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3456.t1.stop1	Gchil3456.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004378_pilon 241256..241258 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3456.t1	Gchil3456.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004378_pilon 239636..241258 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004378_pilon:239636..241258+
coding sequence from alignment at tig00004378_pilon:239636..241258+

mRNA sequence

>Gchil3456.t1 ID=Gchil3456.t1|Name=Gchil3456.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=541bp
MSAQVQRCSACGSDEIDFDAARGQSSCMACGEVLEQNAIVAEVGFAEDAR
GRSNMVGQHVRADGRSNFASMPGYSARATFTTMLNARHKLRQLVSALKLH
QRHTEAAERLFRLAAERNFHRGRRLANVCCACLYAVCRIEKTPHMLLDFS
DVLETNVYLLGHTFLKFAQVVALTLPIIDPSLYIHRFASKLEFGDKTNAV
AMTALRILARMQRDWLSHGRRPSSLCGAALMCAAGMHQFHRSMIDVCRVV
RIGNVTLRERLQELNKTPTATLTAAQIVSRGGDDGKVSSLMLEEEPTACD
PPAFQRSQKQKHLKRKHAHLNTSQADGTATAKRKRTQSDFPSASGQLTRP
EGDIAMDDASIQRQMQMVLASTEMQELEHESREEEQLATAVTLGSPGTES
DIERERDLAEKEAAQDIENGKEDLSDLEEEDVQRYFNTEEECRRKAVLWT
EINKDYLEKQERLETMRRERPDDFKRLRPTRKTSKKKSSAAEKGQKASAK
GKKDVDSEPPAPKPSKKLNYAKLKQLALAAGQEMPSVPIL*

spliced messenger RNA

>Gchil3456.t1 ID=Gchil3456.t1|Name=Gchil3456.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00004378_pilon:239636..241258+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCCAGGTGCAAAGATGCTCCGCTTGCGGCAGCGACGAAATCGA
CTTCGATGCCGCGAGAGGCCAGTCATCATGCATGGCATGCGGCGAAGTGC
TCGAGCAAAACGCTATTGTCGCAGAAGTGGGCTTCGCCGAAGATGCCCGA
GGTCGTTCCAATATGGTGGGGCAGCACGTGCGCGCCGACGGCAGGTCCAA
TTTTGCGTCCATGCCCGGCTATTCCGCGAGAGCCACGTTCACCACCATGC
TCAACGCTCGCCACAAGTTGCGCCAACTCGTGTCTGCCCTCAAGTTGCAT
CAGCGGCACACGGAGGCTGCGGAGCGCCTGTTTCGTCTAGCTGCGGAGCG
AAATTTTCACCGAGGCCGCCGGCTGGCAAATGTGTGTTGTGCTTGTCTGT
ACGCTGTTTGCAGAATTGAGAAGACTCCGCACATGTTGTTGGATTTCTCC
GATGTTCTCGAGACCAATGTTTATCTGCTTGGACACACGTTTCTCAAGTT
TGCCCAAGTCGTTGCCCTTACTTTACCCATCATCGACCCAAGTCTCTACA
TCCATCGTTTTGCAAGCAAGCTTGAATTCGGAGACAAGACCAATGCCGTT
GCCATGACAGCGCTGCGAATTCTAGCCCGAATGCAGCGTGATTGGCTCAG
TCATGGCAGGAGGCCGAGCAGCCTGTGCGGCGCTGCGCTTATGTGTGCAG
CGGGCATGCACCAGTTCCACAGATCTATGATAGACGTTTGCCGTGTGGTC
CGAATAGGGAATGTAACTTTGCGAGAGCGTCTTCAAGAACTCAATAAGAC
CCCAACTGCAACACTGACAGCTGCTCAAATTGTGTCGAGAGGTGGAGACG
ATGGAAAAGTGTCTTCTTTGATGCTAGAAGAAGAGCCTACGGCGTGCGAT
CCACCAGCTTTTCAACGCTCACAGAAACAAAAACATTTGAAGCGCAAACA
TGCGCACCTGAACACTTCACAGGCAGATGGTACCGCAACTGCGAAACGGA
AAAGAACACAGTCCGATTTTCCATCTGCCTCGGGACAATTGACACGACCT
GAAGGCGATATCGCGATGGATGATGCGTCAATTCAGCGACAAATGCAAAT
GGTTCTTGCCAGTACCGAGATGCAAGAGCTAGAACACGAGTCACGAGAGG
AAGAGCAGCTTGCTACTGCTGTCACGTTAGGATCACCAGGAACAGAGAGC
GATATAGAGCGTGAAAGAGACTTAGCAGAGAAGGAAGCTGCACAGGACAT
TGAGAATGGAAAAGAAGACCTCAGCGATTTAGAGGAAGAAGACGTGCAAA
GGTATTTCAACACTGAGGAAGAATGTAGAAGAAAAGCGGTATTATGGACC
GAGATTAACAAGGATTACCTCGAGAAACAAGAGCGGTTAGAAACAATGCG
TCGAGAACGACCAGATGACTTTAAACGATTACGACCAACACGCAAAACGT
CCAAGAAGAAAAGCTCAGCTGCTGAAAAGGGACAGAAAGCTAGTGCTAAA
GGAAAGAAAGACGTTGACTCTGAACCACCTGCGCCAAAACCATCCAAGAA
GCTTAATTATGCGAAACTCAAGCAGCTGGCACTTGCTGCGGGTCAGGAGA
TGCCTTCAGTACCAATACTATAA

protein sequence of Gchil3456.t1

>Gchil3456.t1 ID=Gchil3456.t1|Name=Gchil3456.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=541bp
MSAQVQRCSACGSDEIDFDAARGQSSCMACGEVLEQNAIVAEVGFAEDAR
GRSNMVGQHVRADGRSNFASMPGYSARATFTTMLNARHKLRQLVSALKLH
QRHTEAAERLFRLAAERNFHRGRRLANVCCACLYAVCRIEKTPHMLLDFS
DVLETNVYLLGHTFLKFAQVVALTLPIIDPSLYIHRFASKLEFGDKTNAV
AMTALRILARMQRDWLSHGRRPSSLCGAALMCAAGMHQFHRSMIDVCRVV
RIGNVTLRERLQELNKTPTATLTAAQIVSRGGDDGKVSSLMLEEEPTACD
PPAFQRSQKQKHLKRKHAHLNTSQADGTATAKRKRTQSDFPSASGQLTRP
EGDIAMDDASIQRQMQMVLASTEMQELEHESREEEQLATAVTLGSPGTES
DIERERDLAEKEAAQDIENGKEDLSDLEEEDVQRYFNTEEECRRKAVLWT
EINKDYLEKQERLETMRRERPDDFKRLRPTRKTSKKKSSAAEKGQKASAK
GKKDVDSEPPAPKPSKKLNYAKLKQLALAAGQEMPSVPIL*

mRNA from alignment at tig00004378_pilon:239636..241258+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3456.t1 ID=Gchil3456.t1|Name=Gchil3456.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1623bp|location=Sequence derived from alignment at tig00004378_pilon:239636..241258+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCCCAGGTGCAAAGATGCTCCGCTTGCGGCAGCGACGAAATCGA
CTTCGATGCCGCGAGAGGCCAGTCATCATGCATGGCATGCGGCGAAGTGC
TCGAGCAAAACGCTATTGTCGCAGAAGTGGGCTTCGCCGAAGATGCCCGA
GGTCGTTCCAATATGGTGGGGCAGCACGTGCGCGCCGACGGCAGGTCCAA
TTTTGCGTCCATGCCCGGCTATTCCGCGAGAGCCACGTTCACCACCATGC
TCAACGCTCGCCACAAGTTGCGCCAACTCGTGTCTGCCCTCAAGTTGCAT
CAGCGGCACACGGAGGCTGCGGAGCGCCTGTTTCGTCTAGCTGCGGAGCG
AAATTTTCACCGAGGCCGCCGGCTGGCAAATGTGTGTTGTGCTTGTCTGT
ACGCTGTTTGCAGAATTGAGAAGACTCCGCACATGTTGTTGGATTTCTCC
GATGTTCTCGAGACCAATGTTTATCTGCTTGGACACACGTTTCTCAAGTT
TGCCCAAGTCGTTGCCCTTACTTTACCCATCATCGACCCAAGTCTCTACA
TCCATCGTTTTGCAAGCAAGCTTGAATTCGGAGACAAGACCAATGCCGTT
GCCATGACAGCGCTGCGAATTCTAGCCCGAATGCAGCGTGATTGGCTCAG
TCATGGCAGGAGGCCGAGCAGCCTGTGCGGCGCTGCGCTTATGTGTGCAG
CGGGCATGCACCAGTTCCACAGATCTATGATAGACGTTTGCCGTGTGGTC
CGAATAGGGAATGTAACTTTGCGAGAGCGTCTTCAAGAACTCAATAAGAC
CCCAACTGCAACACTGACAGCTGCTCAAATTGTGTCGAGAGGTGGAGACG
ATGGAAAAGTGTCTTCTTTGATGCTAGAAGAAGAGCCTACGGCGTGCGAT
CCACCAGCTTTTCAACGCTCACAGAAACAAAAACATTTGAAGCGCAAACA
TGCGCACCTGAACACTTCACAGGCAGATGGTACCGCAACTGCGAAACGGA
AAAGAACACAGTCCGATTTTCCATCTGCCTCGGGACAATTGACACGACCT
GAAGGCGATATCGCGATGGATGATGCGTCAATTCAGCGACAAATGCAAAT
GGTTCTTGCCAGTACCGAGATGCAAGAGCTAGAACACGAGTCACGAGAGG
AAGAGCAGCTTGCTACTGCTGTCACGTTAGGATCACCAGGAACAGAGAGC
GATATAGAGCGTGAAAGAGACTTAGCAGAGAAGGAAGCTGCACAGGACAT
TGAGAATGGAAAAGAAGACCTCAGCGATTTAGAGGAAGAAGACGTGCAAA
GGTATTTCAACACTGAGGAAGAATGTAGAAGAAAAGCGGTATTATGGACC
GAGATTAACAAGGATTACCTCGAGAAACAAGAGCGGTTAGAAACAATGCG
TCGAGAACGACCAGATGACTTTAAACGATTACGACCAACACGCAAAACGT
CCAAGAAGAAAAGCTCAGCTGCTGAAAAGGGACAGAAAGCTAGTGCTAAA
GGAAAGAAAGACGTTGACTCTGAACCACCTGCGCCAAAACCATCCAAGAA
GCTTAATTATGCGAAACTCAAGCAGCTGGCACTTGCTGCGGGTCAGGAGA
TGCCTTCAGTACCAATACTATAA

Coding sequence (CDS) from alignment at tig00004378_pilon:239636..241258+

>Gchil3456.t1 ID=Gchil3456.t1|Name=Gchil3456.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1623bp|location=Sequence derived from alignment at tig00004378_pilon:239636..241258+ (Gracilaria chilensis NLEC103_M9 male)
ATGAGCGCCCAGGTGCAAAGATGCTCCGCTTGCGGCAGCGACGAAATCGA
CTTCGATGCCGCGAGAGGCCAGTCATCATGCATGGCATGCGGCGAAGTGC
TCGAGCAAAACGCTATTGTCGCAGAAGTGGGCTTCGCCGAAGATGCCCGA
GGTCGTTCCAATATGGTGGGGCAGCACGTGCGCGCCGACGGCAGGTCCAA
TTTTGCGTCCATGCCCGGCTATTCCGCGAGAGCCACGTTCACCACCATGC
TCAACGCTCGCCACAAGTTGCGCCAACTCGTGTCTGCCCTCAAGTTGCAT
CAGCGGCACACGGAGGCTGCGGAGCGCCTGTTTCGTCTAGCTGCGGAGCG
AAATTTTCACCGAGGCCGCCGGCTGGCAAATGTGTGTTGTGCTTGTCTGT
ACGCTGTTTGCAGAATTGAGAAGACTCCGCACATGTTGTTGGATTTCTCC
GATGTTCTCGAGACCAATGTTTATCTGCTTGGACACACGTTTCTCAAGTT
TGCCCAAGTCGTTGCCCTTACTTTACCCATCATCGACCCAAGTCTCTACA
TCCATCGTTTTGCAAGCAAGCTTGAATTCGGAGACAAGACCAATGCCGTT
GCCATGACAGCGCTGCGAATTCTAGCCCGAATGCAGCGTGATTGGCTCAG
TCATGGCAGGAGGCCGAGCAGCCTGTGCGGCGCTGCGCTTATGTGTGCAG
CGGGCATGCACCAGTTCCACAGATCTATGATAGACGTTTGCCGTGTGGTC
CGAATAGGGAATGTAACTTTGCGAGAGCGTCTTCAAGAACTCAATAAGAC
CCCAACTGCAACACTGACAGCTGCTCAAATTGTGTCGAGAGGTGGAGACG
ATGGAAAAGTGTCTTCTTTGATGCTAGAAGAAGAGCCTACGGCGTGCGAT
CCACCAGCTTTTCAACGCTCACAGAAACAAAAACATTTGAAGCGCAAACA
TGCGCACCTGAACACTTCACAGGCAGATGGTACCGCAACTGCGAAACGGA
AAAGAACACAGTCCGATTTTCCATCTGCCTCGGGACAATTGACACGACCT
GAAGGCGATATCGCGATGGATGATGCGTCAATTCAGCGACAAATGCAAAT
GGTTCTTGCCAGTACCGAGATGCAAGAGCTAGAACACGAGTCACGAGAGG
AAGAGCAGCTTGCTACTGCTGTCACGTTAGGATCACCAGGAACAGAGAGC
GATATAGAGCGTGAAAGAGACTTAGCAGAGAAGGAAGCTGCACAGGACAT
TGAGAATGGAAAAGAAGACCTCAGCGATTTAGAGGAAGAAGACGTGCAAA
GGTATTTCAACACTGAGGAAGAATGTAGAAGAAAAGCGGTATTATGGACC
GAGATTAACAAGGATTACCTCGAGAAACAAGAGCGGTTAGAAACAATGCG
TCGAGAACGACCAGATGACTTTAAACGATTACGACCAACACGCAAAACGT
CCAAGAAGAAAAGCTCAGCTGCTGAAAAGGGACAGAAAGCTAGTGCTAAA
GGAAAGAAAGACGTTGACTCTGAACCACCTGCGCCAAAACCATCCAAGAA
GCTTAATTATGCGAAACTCAAGCAGCTGGCACTTGCTGCGGGTCAGGAGA
TGCCTTCAGTACCAATACTATAA