Gchil3762.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3762.t1
Unique NameGchil3762.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000010_piloncontigtig00000010_pilon:202530..204192 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704806.1
PFAMsPro_isomerase
Max annot lvl2759|Eukaryota
Evalue5.87e-78
EggNOG OGsCOG0652@1|root,2QSSP@2759|Eukaryota
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3762Gchil3762Gracilaria chilensis NLEC103_M9 malegenetig00000010_pilon 202530..204192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3762.t1Gchil3762.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000010_pilon 202530..204192 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3762.t1.stop1Gchil3762.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000010_pilon 202530..202532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3762.t1.CDS1Gchil3762.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 202530..203187 -
Gchil3762.t1.CDS2Gchil3762.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 203298..203409 -
Gchil3762.t1.CDS3Gchil3762.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000010_pilon 203514..204192 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3762.t1.exon1Gchil3762.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 202530..203187 -
Gchil3762.t1.exon2Gchil3762.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 203298..203409 -
Gchil3762.t1.exon3Gchil3762.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000010_pilon 203514..204192 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3762.t1.intron1Gchil3762.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 203188..203297 -
Gchil3762.t1.intron2Gchil3762.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000010_pilon 203410..203513 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3762.t1.start1Gchil3762.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000010_pilon 204190..204192 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3762.t1 ID=Gchil3762.t1|Name=Gchil3762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp
MPTSDASQSSRAAVAFLYRSSVPIVKRPRFVISSPTAPSCSSRSPSHRTA
IAAATAATAAAALLLLPPSSTQAKGLLSTNTIFRRYLITDSDAILRYSLP
IPSERYSTDAIPIRRIQEQLERLGVDLRSRGAAGLISGRRDVQKLRDLLT
AARLDVLLDVPASKRQVAAQSLSALESCVSEIEEELQLSSAPANSNLFPP
QLSRVQETLSDAFERRNSMSKKTNYDATLVEEFRQKALDHVANIEQLAVE
GIGLPFKIPRRYNTFPRLVGRAVMQLNMKKGGDATWRDPKTLTSLGKDLT
MTVVLDGFSAPLTCGNFVDIARRGYYDNTRILAKQKDFFVQMGEREDDNV
EGFKDPQSGKRRQIPLEILVDGESSPAYGATLDELGIGDLQPVLPVSAFG
AMVMVHSVEDANDASSQFYFFMLDPTSYQARSFGGSVLTGSLSTFGYVDK
GKEFLPQFEVGDRIESVKMVSGRDNFVESGDS*
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spliced messenger RNA

>Gchil3762.t1 ID=Gchil3762.t1|Name=Gchil3762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000010_pilon:202530..204192- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAACATCTGATGCGTCTCAATCGTCGAGAGCGGCAGTCGCTTTTCT
TTACCGATCTTCGGTACCCATTGTCAAGCGGCCTCGCTTTGTAATCTCTT
CTCCGACGGCTCCAAGTTGTTCCTCACGGTCTCCATCGCACCGCACTGCA
ATCGCAGCAGCCACAGCAGCTACTGCAGCAGCGGCTTTGCTGTTGTTACC
CCCTTCCAGCACACAAGCAAAAGGCTTGCTATCGACCAATACCATATTCC
GTCGCTATCTCATTACGGATTCAGACGCCATCCTTCGCTACTCACTCCCG
ATACCCAGCGAACGCTATTCAACAGATGCCATTCCGATTCGTCGAATCCA
AGAACAACTAGAGCGCCTAGGAGTTGATTTGCGCTCCCGTGGAGCAGCGG
GGCTAATTTCCGGTAGAAGAGATGTGCAAAAACTCCGGGATCTATTGACT
GCAGCTAGATTGGATGTACTATTGGATGTGCCCGCCAGCAAACGACAAGT
AGCAGCCCAATCTCTCTCCGCGTTGGAGAGCTGTGTATCCGAAATTGAAG
AAGAACTACAGCTTTCGTCTGCGCCCGCAAACAGCAACTTGTTTCCCCCT
CAACTTTCTAGAGTTCAAGAAACCCTATCCGATGCATTTGAGCGGCGAAA
CTCCATGTCCAAGAAGACGAATTACGATGCTACTTTAGTGGAAGAATTCA
GACAAAAAGCTTTGGACCATGTTGCGAACATTGAGCAACTTGCTGTGGAA
GGCATTGGGTTGCCCTTCAAGATTCCACGTCGGTATAACACCTTTCCACG
CCTTGTTGGCAGAGCTGTCATGCAGCTCAACATGAAAAAAGGAGGAGATG
CAACATGGAGAGATCCAAAGACTTTGACATCACTTGGAAAGGACCTAACA
ATGACTGTCGTTCTGGACGGGTTTTCAGCGCCGCTGACCTGTGGTAATTT
TGTAGACATTGCGCGCCGTGGATACTATGACAACACAAGAATTCTGGCGA
AGCAAAAGGACTTTTTCGTTCAAATGGGAGAACGAGAAGATGACAACGTT
GAGGGCTTCAAAGACCCGCAGTCAGGAAAGAGAAGACAAATTCCTCTTGA
AATCCTAGTGGACGGGGAATCGTCACCTGCATACGGTGCAACTTTAGACG
AGCTTGGGATAGGTGATTTACAACCTGTTCTACCTGTTTCTGCATTCGGC
GCAATGGTAATGGTACACAGTGTGGAAGATGCAAATGACGCTTCTTCACA
GTTCTACTTTTTCATGCTTGATCCAACGTCATATCAGGCCAGGTCTTTTG
GCGGAAGTGTGTTAACCGGAAGCCTGTCCACTTTTGGGTACGTGGATAAG
GGTAAAGAATTCCTTCCACAGTTTGAAGTTGGGGATAGGATAGAATCGGT
GAAGATGGTCTCTGGGCGTGACAACTTTGTAGAAAGTGGTGATAGCTGA
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protein sequence of Gchil3762.t1

>Gchil3762.t1 ID=Gchil3762.t1|Name=Gchil3762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=483bp
MPTSDASQSSRAAVAFLYRSSVPIVKRPRFVISSPTAPSCSSRSPSHRTA
IAAATAATAAAALLLLPPSSTQAKGLLSTNTIFRRYLITDSDAILRYSLP
IPSERYSTDAIPIRRIQEQLERLGVDLRSRGAAGLISGRRDVQKLRDLLT
AARLDVLLDVPASKRQVAAQSLSALESCVSEIEEELQLSSAPANSNLFPP
QLSRVQETLSDAFERRNSMSKKTNYDATLVEEFRQKALDHVANIEQLAVE
GIGLPFKIPRRYNTFPRLVGRAVMQLNMKKGGDATWRDPKTLTSLGKDLT
MTVVLDGFSAPLTCGNFVDIARRGYYDNTRILAKQKDFFVQMGEREDDNV
EGFKDPQSGKRRQIPLEILVDGESSPAYGATLDELGIGDLQPVLPVSAFG
AMVMVHSVEDANDASSQFYFFMLDPTSYQARSFGGSVLTGSLSTFGYVDK
GKEFLPQFEVGDRIESVKMVSGRDNFVESGDS*
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mRNA from alignment at tig00000010_pilon:202530..204192-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3762.t1 ID=Gchil3762.t1|Name=Gchil3762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1663bp|location=Sequence derived from alignment at tig00000010_pilon:202530..204192- (Gracilaria chilensis NLEC103_M9 male)
ATGCCAACATCTGATGCGTCTCAATCGTCGAGAGCGGCAGTCGCTTTTCT
TTACCGATCTTCGGTACCCATTGTCAAGCGGCCTCGCTTTGTAATCTCTT
CTCCGACGGCTCCAAGTTGTTCCTCACGGTCTCCATCGCACCGCACTGCA
ATCGCAGCAGCCACAGCAGCTACTGCAGCAGCGGCTTTGCTGTTGTTACC
CCCTTCCAGCACACAAGCAAAAGGCTTGCTATCGACCAATACCATATTCC
GTCGCTATCTCATTACGGATTCAGACGCCATCCTTCGCTACTCACTCCCG
ATACCCAGCGAACGCTATTCAACAGATGCCATTCCGATTCGTCGAATCCA
AGAACAACTAGAGCGCCTAGGAGTTGATTTGCGCTCCCGTGGAGCAGCGG
GGCTAATTTCCGGTAGAAGAGATGTGCAAAAACTCCGGGATCTATTGACT
GCAGCTAGATTGGATGTACTATTGGATGTGCCCGCCAGCAAACGACAAGT
AGCAGCCCAATCTCTCTCCGCGTTGGAGAGCTGTGTATCCGAAATTGAAG
AAGAACTACAGCTTTCGTCTGCGCCCGCAAACAGCAACTTGTTTCCCCCT
CAACTTTCTAGAGTTCAAGAAACCCTATCCGATGCATTTGAGCGGCGAAA
CTCCATGTCCAAGAAGACGAATTACGATGGTATGTTCCTCCTCTGTTTTG
GACATCTTTTGCTTTCCCAAATTGCGACACGCACATTCCTCGCATTCTCA
CCATGCGTTTCTTTTTGCGCATTGTTTTCCCAGCTACTTTAGTGGAAGAA
TTCAGACAAAAAGCTTTGGACCATGTTGCGAACATTGAGCAACTTGCTGT
GGAAGGCATTGGGTTGCCCTTCAAGATTCCACGTCGGTATAACACGTACG
TCTACATTCCATTGACAGACAACAACGCATGAATTGCCATGCATTTTGTT
TGGCTCCTGCTAACTTCGAAACTAACCTGCTTTTTGGCGGACGAGTCCCG
TGCAGCTTTCCACGCCTTGTTGGCAGAGCTGTCATGCAGCTCAACATGAA
AAAAGGAGGAGATGCAACATGGAGAGATCCAAAGACTTTGACATCACTTG
GAAAGGACCTAACAATGACTGTCGTTCTGGACGGGTTTTCAGCGCCGCTG
ACCTGTGGTAATTTTGTAGACATTGCGCGCCGTGGATACTATGACAACAC
AAGAATTCTGGCGAAGCAAAAGGACTTTTTCGTTCAAATGGGAGAACGAG
AAGATGACAACGTTGAGGGCTTCAAAGACCCGCAGTCAGGAAAGAGAAGA
CAAATTCCTCTTGAAATCCTAGTGGACGGGGAATCGTCACCTGCATACGG
TGCAACTTTAGACGAGCTTGGGATAGGTGATTTACAACCTGTTCTACCTG
TTTCTGCATTCGGCGCAATGGTAATGGTACACAGTGTGGAAGATGCAAAT
GACGCTTCTTCACAGTTCTACTTTTTCATGCTTGATCCAACGTCATATCA
GGCCAGGTCTTTTGGCGGAAGTGTGTTAACCGGAAGCCTGTCCACTTTTG
GGTACGTGGATAAGGGTAAAGAATTCCTTCCACAGTTTGAAGTTGGGGAT
AGGATAGAATCGGTGAAGATGGTCTCTGGGCGTGACAACTTTGTAGAAAG
TGGTGATAGCTGA
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Coding sequence (CDS) from alignment at tig00000010_pilon:202530..204192-

>Gchil3762.t1 ID=Gchil3762.t1|Name=Gchil3762.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000010_pilon:202530..204192- (Gracilaria chilensis NLEC103_M9 male)
ATGCCAACATCTGATGCGTCTCAATCGTCGAGAGCGGCAGTCGCTTTTCT
TTACCGATCTTCGGTACCCATTGTCAAGCGGCCTCGCTTTGTAATCTCTT
CTCCGACGGCTCCAAGTTGTTCCTCACGGTCTCCATCGCACCGCACTGCA
ATCGCAGCAGCCACAGCAGCTACTGCAGCAGCGGCTTTGCTGTTGTTACC
CCCTTCCAGCACACAAGCAAAAGGCTTGCTATCGACCAATACCATATTCC
GTCGCTATCTCATTACGGATTCAGACGCCATCCTTCGCTACTCACTCCCG
ATACCCAGCGAACGCTATTCAACAGATGCCATTCCGATTCGTCGAATCCA
AGAACAACTAGAGCGCCTAGGAGTTGATTTGCGCTCCCGTGGAGCAGCGG
GGCTAATTTCCGGTAGAAGAGATGTGCAAAAACTCCGGGATCTATTGACT
GCAGCTAGATTGGATGTACTATTGGATGTGCCCGCCAGCAAACGACAAGT
AGCAGCCCAATCTCTCTCCGCGTTGGAGAGCTGTGTATCCGAAATTGAAG
AAGAACTACAGCTTTCGTCTGCGCCCGCAAACAGCAACTTGTTTCCCCCT
CAACTTTCTAGAGTTCAAGAAACCCTATCCGATGCATTTGAGCGGCGAAA
CTCCATGTCCAAGAAGACGAATTACGATGCTACTTTAGTGGAAGAATTCA
GACAAAAAGCTTTGGACCATGTTGCGAACATTGAGCAACTTGCTGTGGAA
GGCATTGGGTTGCCCTTCAAGATTCCACGTCGGTATAACACCTTTCCACG
CCTTGTTGGCAGAGCTGTCATGCAGCTCAACATGAAAAAAGGAGGAGATG
CAACATGGAGAGATCCAAAGACTTTGACATCACTTGGAAAGGACCTAACA
ATGACTGTCGTTCTGGACGGGTTTTCAGCGCCGCTGACCTGTGGTAATTT
TGTAGACATTGCGCGCCGTGGATACTATGACAACACAAGAATTCTGGCGA
AGCAAAAGGACTTTTTCGTTCAAATGGGAGAACGAGAAGATGACAACGTT
GAGGGCTTCAAAGACCCGCAGTCAGGAAAGAGAAGACAAATTCCTCTTGA
AATCCTAGTGGACGGGGAATCGTCACCTGCATACGGTGCAACTTTAGACG
AGCTTGGGATAGGTGATTTACAACCTGTTCTACCTGTTTCTGCATTCGGC
GCAATGGTAATGGTACACAGTGTGGAAGATGCAAATGACGCTTCTTCACA
GTTCTACTTTTTCATGCTTGATCCAACGTCATATCAGGCCAGGTCTTTTG
GCGGAAGTGTGTTAACCGGAAGCCTGTCCACTTTTGGGTACGTGGATAAG
GGTAAAGAATTCCTTCCACAGTTTGAAGTTGGGGATAGGATAGAATCGGT
GAAGATGGTCTCTGGGCGTGACAACTTTGTAGAAAGTGGTGATAGCTGA
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