Gchil3434.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3434.t1
Unique NameGchil3434.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004378_piloncontigtig00004378_pilon:127820..128797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704338.1
Preferred nameCDKB
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K02087,ko:K02206,ko:K07760
KEGG Pathwayko04068,ko04110,ko04114,ko04115,ko04151,ko04218,ko04540,ko04914,ko04934,ko05161,ko05162,ko05165,ko05168,ko05169,ko05200,ko05203,ko05215,ko05222,ko05226,map04068,map04110,map04114,map04115,map04151,map04218,map04540,map04914,map04934,map05161,map05162,map05165,map05168,map05169,map05200,map05203,map05215,map05222,map05226
KEGG ModuleM00692,M00693
GOsGO:0000003,GO:0000082,GO:0000086,GO:0000278,GO:0000307,GO:0000902,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006325,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007049,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009755,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009888,GO:0009889,GO:0009934,GO:0009987,GO:0010016,GO:0010033,GO:0010103,GO:0010154,GO:0010374,GO:0010376,GO:0010389,GO:0010440,GO:0010444,GO:0010468,GO:0010556,GO:0010564,GO:0016043,GO:0016049,GO:0016301,GO:0016310,GO:0016569,GO:0016570,GO:0016572,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022603,GO:0023052,GO:0030154,GO:0030332,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0032870,GO:0032875,GO:0032989,GO:0032991,GO:0034641,GO:0034645,GO:0036211,GO:0040007,GO:0042023,GO:0042127,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044839,GO:0044843,GO:0046483,GO:0046777,GO:0048316,GO:0048366,GO:0048367,GO:0048509,GO:0048518,GO:0048522,GO:0048589,GO:0048608,GO:0048646,GO:0048731,GO:0048825,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051239,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0060560,GO:0061458,GO:0061695,GO:0065007,GO:0070887,GO:0071310,GO:0071495,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0090558,GO:0090626,GO:0090627,GO:0090698,GO:0097472,GO:0099402,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1901987,GO:1901990,GO:1902494,GO:1902554,GO:1902749,GO:1902806,GO:1902911,GO:1903047,GO:1990234,GO:2000026,GO:2000037,GO:2000112
Evalue2.24e-143
EggNOG OGsKOG0594@1|root,KOG0594@2759|Eukaryota
EC2.7.11.22,2.7.11.23
Descriptioncyclin-dependent protein serine/threonine kinase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03032,ko03036,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3434Gchil3434Gracilaria chilensis NLEC103_M9 malegenetig00004378_pilon 127820..128797 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3434.t1.stop1Gchil3434.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004378_pilon 127820..127822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3434.t1.CDS1Gchil3434.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004378_pilon 127820..128797 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3434.t1.exon1Gchil3434.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004378_pilon 127820..128797 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3434.t1.start1Gchil3434.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004378_pilon 128795..128797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3434.t1Gchil3434.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004378_pilon 127820..128797 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3434.t1 ID=Gchil3434.t1|Name=Gchil3434.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=326bp
MENYKRTELLGQGTYGKVYKAQHLETGKIVALKKTILSSDDEGVPPTTLR
EVSILRMLNSPYVVRLEEVVHSEQRSGMPVLFLVFEFLDHDLKQFMTKTY
GKGMGMNAQLAKEFCYQILLGLKCCHSNAVLHRDLKPQNLLIDVKSRTIK
LADFGLGRAFTLPVGKYTHEVVTLWYRAPEILLGSKYYSTGVDIWSVGCI
LAEMILGRPMFCGDSELEQLLAIFRVLGTPTGETWPNVASLRDWHAYPQW
KRQRLQDAYKGLSVLGADGIKLLESMLQLSPHRRLSALDALESSYFDDIR
HKYSEYTGPILDENKENETMINDLL*
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spliced messenger RNA

>Gchil3434.t1 ID=Gchil3434.t1|Name=Gchil3434.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00004378_pilon:127820..128797- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAACTACAAACGCACTGAGCTGCTCGGTCAGGGCACCTACGGCAA
GGTGTACAAGGCGCAGCACTTGGAGACCGGTAAGATCGTGGCATTGAAGA
AAACCATTCTCAGCAGTGATGACGAGGGGGTACCGCCCACCACTCTGCGC
GAGGTTTCAATCTTGCGCATGCTTAACAGCCCGTATGTGGTGCGTCTTGA
GGAGGTGGTGCATTCGGAACAGCGCTCTGGTATGCCGGTTCTATTCCTTG
TGTTCGAATTTCTCGATCACGATCTCAAACAGTTCATGACTAAGACGTAC
GGCAAAGGCATGGGCATGAACGCACAGCTGGCCAAGGAATTTTGCTACCA
GATCTTGTTGGGACTCAAGTGCTGTCATTCCAACGCAGTGCTTCATCGCG
ATCTCAAGCCGCAAAACCTGCTAATCGACGTCAAGTCGCGCACCATCAAG
CTAGCGGACTTTGGACTCGGGCGCGCCTTCACGCTGCCCGTGGGCAAGTA
CACGCACGAGGTGGTGACGCTGTGGTATCGCGCGCCGGAAATTCTACTCG
GCAGCAAATACTACTCCACGGGCGTTGACATATGGTCTGTGGGGTGCATC
CTAGCCGAGATGATTCTTGGACGACCAATGTTCTGCGGCGACTCGGAGCT
AGAGCAGTTACTGGCCATTTTCCGAGTACTGGGCACGCCCACGGGCGAGA
CTTGGCCAAATGTGGCATCGCTGCGCGACTGGCACGCATACCCGCAGTGG
AAACGACAACGGCTGCAGGACGCGTACAAGGGGCTGTCGGTGCTGGGCGC
GGACGGAATCAAGTTGTTGGAGAGCATGTTGCAGCTATCACCGCACCGGC
GATTGTCGGCGTTGGACGCGCTGGAGAGCTCGTACTTTGACGATATTCGA
CACAAGTACTCGGAGTACACAGGCCCAATACTCGACGAGAACAAGGAGAA
TGAAACCATGATTAATGACCTGCTATAG
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protein sequence of Gchil3434.t1

>Gchil3434.t1 ID=Gchil3434.t1|Name=Gchil3434.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=326bp
MENYKRTELLGQGTYGKVYKAQHLETGKIVALKKTILSSDDEGVPPTTLR
EVSILRMLNSPYVVRLEEVVHSEQRSGMPVLFLVFEFLDHDLKQFMTKTY
GKGMGMNAQLAKEFCYQILLGLKCCHSNAVLHRDLKPQNLLIDVKSRTIK
LADFGLGRAFTLPVGKYTHEVVTLWYRAPEILLGSKYYSTGVDIWSVGCI
LAEMILGRPMFCGDSELEQLLAIFRVLGTPTGETWPNVASLRDWHAYPQW
KRQRLQDAYKGLSVLGADGIKLLESMLQLSPHRRLSALDALESSYFDDIR
HKYSEYTGPILDENKENETMINDLL*
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mRNA from alignment at tig00004378_pilon:127820..128797-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3434.t1 ID=Gchil3434.t1|Name=Gchil3434.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00004378_pilon:127820..128797- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGAACTACAAACGCACTGAGCTGCTCGGTCAGGGCACCTACGGCAA
GGTGTACAAGGCGCAGCACTTGGAGACCGGTAAGATCGTGGCATTGAAGA
AAACCATTCTCAGCAGTGATGACGAGGGGGTACCGCCCACCACTCTGCGC
GAGGTTTCAATCTTGCGCATGCTTAACAGCCCGTATGTGGTGCGTCTTGA
GGAGGTGGTGCATTCGGAACAGCGCTCTGGTATGCCGGTTCTATTCCTTG
TGTTCGAATTTCTCGATCACGATCTCAAACAGTTCATGACTAAGACGTAC
GGCAAAGGCATGGGCATGAACGCACAGCTGGCCAAGGAATTTTGCTACCA
GATCTTGTTGGGACTCAAGTGCTGTCATTCCAACGCAGTGCTTCATCGCG
ATCTCAAGCCGCAAAACCTGCTAATCGACGTCAAGTCGCGCACCATCAAG
CTAGCGGACTTTGGACTCGGGCGCGCCTTCACGCTGCCCGTGGGCAAGTA
CACGCACGAGGTGGTGACGCTGTGGTATCGCGCGCCGGAAATTCTACTCG
GCAGCAAATACTACTCCACGGGCGTTGACATATGGTCTGTGGGGTGCATC
CTAGCCGAGATGATTCTTGGACGACCAATGTTCTGCGGCGACTCGGAGCT
AGAGCAGTTACTGGCCATTTTCCGAGTACTGGGCACGCCCACGGGCGAGA
CTTGGCCAAATGTGGCATCGCTGCGCGACTGGCACGCATACCCGCAGTGG
AAACGACAACGGCTGCAGGACGCGTACAAGGGGCTGTCGGTGCTGGGCGC
GGACGGAATCAAGTTGTTGGAGAGCATGTTGCAGCTATCACCGCACCGGC
GATTGTCGGCGTTGGACGCGCTGGAGAGCTCGTACTTTGACGATATTCGA
CACAAGTACTCGGAGTACACAGGCCCAATACTCGACGAGAACAAGGAGAA
TGAAACCATGATTAATGACCTGCTATAG
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Coding sequence (CDS) from alignment at tig00004378_pilon:127820..128797-

>Gchil3434.t1 ID=Gchil3434.t1|Name=Gchil3434.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00004378_pilon:127820..128797- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGAACTACAAACGCACTGAGCTGCTCGGTCAGGGCACCTACGGCAA
GGTGTACAAGGCGCAGCACTTGGAGACCGGTAAGATCGTGGCATTGAAGA
AAACCATTCTCAGCAGTGATGACGAGGGGGTACCGCCCACCACTCTGCGC
GAGGTTTCAATCTTGCGCATGCTTAACAGCCCGTATGTGGTGCGTCTTGA
GGAGGTGGTGCATTCGGAACAGCGCTCTGGTATGCCGGTTCTATTCCTTG
TGTTCGAATTTCTCGATCACGATCTCAAACAGTTCATGACTAAGACGTAC
GGCAAAGGCATGGGCATGAACGCACAGCTGGCCAAGGAATTTTGCTACCA
GATCTTGTTGGGACTCAAGTGCTGTCATTCCAACGCAGTGCTTCATCGCG
ATCTCAAGCCGCAAAACCTGCTAATCGACGTCAAGTCGCGCACCATCAAG
CTAGCGGACTTTGGACTCGGGCGCGCCTTCACGCTGCCCGTGGGCAAGTA
CACGCACGAGGTGGTGACGCTGTGGTATCGCGCGCCGGAAATTCTACTCG
GCAGCAAATACTACTCCACGGGCGTTGACATATGGTCTGTGGGGTGCATC
CTAGCCGAGATGATTCTTGGACGACCAATGTTCTGCGGCGACTCGGAGCT
AGAGCAGTTACTGGCCATTTTCCGAGTACTGGGCACGCCCACGGGCGAGA
CTTGGCCAAATGTGGCATCGCTGCGCGACTGGCACGCATACCCGCAGTGG
AAACGACAACGGCTGCAGGACGCGTACAAGGGGCTGTCGGTGCTGGGCGC
GGACGGAATCAAGTTGTTGGAGAGCATGTTGCAGCTATCACCGCACCGGC
GATTGTCGGCGTTGGACGCGCTGGAGAGCTCGTACTTTGACGATATTCGA
CACAAGTACTCGGAGTACACAGGCCCAATACTCGACGAGAACAAGGAGAA
TGAAACCATGATTAATGACCTGCTATAG
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