Gchil6900.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6900.t1
Unique Name	Gchil6900.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	297

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:640329..641219 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704060.1
PFAMs	Methyltransf_11,Methyltransf_25
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00003,RC01662
KEGG ko	ko:K12502
KEGG Reaction	R07501,R10709,R10710
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00112
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006732,GO:0006766,GO:0006775,GO:0008150,GO:0008152,GO:0008168,GO:0008757,GO:0009058,GO:0009108,GO:0009110,GO:0009507,GO:0009526,GO:0009528,GO:0009536,GO:0009706,GO:0009941,GO:0009987,GO:0010189,GO:0010236,GO:0016020,GO:0016740,GO:0016741,GO:0018130,GO:0019866,GO:0031090,GO:0031967,GO:0031969,GO:0031975,GO:0032259,GO:0042170,GO:0042180,GO:0042181,GO:0042360,GO:0042362,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0051186,GO:0051188,GO:0051741,GO:0071704,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1901661,GO:1901663
Evalue	1.28e-143
EggNOG OGs	COG2226@1\|root,KOG1540@2759\|Eukaryota
EC	2.1.1.295
Description	2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity
COG category	H
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6900	Gchil6900	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 640329..641219 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6900.t1.start1	Gchil6900.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 640329..640331 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6900.t1.CDS1	Gchil6900.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 640329..641219 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6900.t1.exon1	Gchil6900.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 640329..641219 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6900.t1.stop1	Gchil6900.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 641217..641219 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6900.t1	Gchil6900.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 640329..641219 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:640329..641219+
coding sequence from alignment at tig00004376_pilon:640329..641219+

mRNA sequence

>Gchil6900.t1 ID=Gchil6900.t1|Name=Gchil6900.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=297bp
MTVASEGGEGPKRRGRGLIQHKREAFWFYRFLSIVYDTIVNPFHWTKEMR
DRSLSQAQLECPGRDLKTVDVGGGTGFCTEGVAKYIDTKHITLLDQSPHQ
MAKAKAKKTLEGVTFVEGDAENLPFSSGEYDRYTSAGSIEYWPEPQRGIA
EAYRVLKPGGVATLIGPVRATNWFSRFWCDLWMLFPMESEYREWFNAAGF
KDLKISYIGPEAYKGVRQHGLIMGLTITGTKPTNGPMESPVKLGDMLESR
KRELSLTDRLLFLPKWVFGVLAGGYYFILPFLIILYAALFIHRKDE*

spliced messenger RNA

>Gchil6900.t1 ID=Gchil6900.t1|Name=Gchil6900.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00004376_pilon:640329..641219+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGTTGCTTCTGAAGGCGGAGAAGGCCCAAAACGACGAGGAAGAGG
ACTTATTCAGCACAAGCGAGAGGCGTTTTGGTTCTATCGGTTCCTGTCCA
TTGTGTATGATACCATCGTCAACCCTTTTCACTGGACGAAGGAAATGCGC
GACCGCTCTCTCAGTCAAGCACAGCTTGAATGCCCTGGTCGTGATCTTAA
GACCGTGGATGTCGGGGGTGGTACAGGTTTCTGCACGGAGGGCGTTGCGA
AATATATTGATACGAAGCATATAACATTGTTGGATCAGAGTCCTCATCAA
ATGGCAAAGGCGAAGGCTAAGAAAACATTGGAAGGCGTCACGTTCGTAGA
AGGAGATGCCGAAAACCTGCCATTCAGCAGTGGAGAATATGATAGATACA
CATCGGCAGGCTCTATCGAATACTGGCCGGAACCGCAGCGAGGTATTGCT
GAGGCATATCGCGTGTTGAAGCCGGGCGGAGTAGCTACTCTCATTGGTCC
AGTGCGTGCCACAAACTGGTTCTCGAGATTCTGGTGCGACCTTTGGATGT
TGTTTCCCATGGAGTCGGAATACCGTGAATGGTTCAATGCAGCTGGTTTC
AAGGACTTGAAAATTTCCTATATTGGTCCGGAAGCATATAAGGGCGTCCG
TCAGCATGGTCTAATCATGGGCCTCACGATCACCGGTACCAAACCCACTA
ACGGACCCATGGAAAGCCCTGTGAAGCTTGGCGACATGCTTGAATCTAGA
AAACGAGAATTATCTTTGACTGATCGGCTCCTTTTCCTTCCAAAGTGGGT
TTTCGGTGTCTTAGCCGGAGGCTACTATTTCATTCTTCCGTTTCTAATTA
TCCTCTATGCTGCGCTGTTCATTCATCGAAAGGATGAATAA

protein sequence of Gchil6900.t1

>Gchil6900.t1 ID=Gchil6900.t1|Name=Gchil6900.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=297bp
MTVASEGGEGPKRRGRGLIQHKREAFWFYRFLSIVYDTIVNPFHWTKEMR
DRSLSQAQLECPGRDLKTVDVGGGTGFCTEGVAKYIDTKHITLLDQSPHQ
MAKAKAKKTLEGVTFVEGDAENLPFSSGEYDRYTSAGSIEYWPEPQRGIA
EAYRVLKPGGVATLIGPVRATNWFSRFWCDLWMLFPMESEYREWFNAAGF
KDLKISYIGPEAYKGVRQHGLIMGLTITGTKPTNGPMESPVKLGDMLESR
KRELSLTDRLLFLPKWVFGVLAGGYYFILPFLIILYAALFIHRKDE*

mRNA from alignment at tig00004376_pilon:640329..641219+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6900.t1 ID=Gchil6900.t1|Name=Gchil6900.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00004376_pilon:640329..641219+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGTTGCTTCTGAAGGCGGAGAAGGCCCAAAACGACGAGGAAGAGG
ACTTATTCAGCACAAGCGAGAGGCGTTTTGGTTCTATCGGTTCCTGTCCA
TTGTGTATGATACCATCGTCAACCCTTTTCACTGGACGAAGGAAATGCGC
GACCGCTCTCTCAGTCAAGCACAGCTTGAATGCCCTGGTCGTGATCTTAA
GACCGTGGATGTCGGGGGTGGTACAGGTTTCTGCACGGAGGGCGTTGCGA
AATATATTGATACGAAGCATATAACATTGTTGGATCAGAGTCCTCATCAA
ATGGCAAAGGCGAAGGCTAAGAAAACATTGGAAGGCGTCACGTTCGTAGA
AGGAGATGCCGAAAACCTGCCATTCAGCAGTGGAGAATATGATAGATACA
CATCGGCAGGCTCTATCGAATACTGGCCGGAACCGCAGCGAGGTATTGCT
GAGGCATATCGCGTGTTGAAGCCGGGCGGAGTAGCTACTCTCATTGGTCC
AGTGCGTGCCACAAACTGGTTCTCGAGATTCTGGTGCGACCTTTGGATGT
TGTTTCCCATGGAGTCGGAATACCGTGAATGGTTCAATGCAGCTGGTTTC
AAGGACTTGAAAATTTCCTATATTGGTCCGGAAGCATATAAGGGCGTCCG
TCAGCATGGTCTAATCATGGGCCTCACGATCACCGGTACCAAACCCACTA
ACGGACCCATGGAAAGCCCTGTGAAGCTTGGCGACATGCTTGAATCTAGA
AAACGAGAATTATCTTTGACTGATCGGCTCCTTTTCCTTCCAAAGTGGGT
TTTCGGTGTCTTAGCCGGAGGCTACTATTTCATTCTTCCGTTTCTAATTA
TCCTCTATGCTGCGCTGTTCATTCATCGAAAGGATGAATAA

Coding sequence (CDS) from alignment at tig00004376_pilon:640329..641219+

>Gchil6900.t1 ID=Gchil6900.t1|Name=Gchil6900.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00004376_pilon:640329..641219+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCGTTGCTTCTGAAGGCGGAGAAGGCCCAAAACGACGAGGAAGAGG
ACTTATTCAGCACAAGCGAGAGGCGTTTTGGTTCTATCGGTTCCTGTCCA
TTGTGTATGATACCATCGTCAACCCTTTTCACTGGACGAAGGAAATGCGC
GACCGCTCTCTCAGTCAAGCACAGCTTGAATGCCCTGGTCGTGATCTTAA
GACCGTGGATGTCGGGGGTGGTACAGGTTTCTGCACGGAGGGCGTTGCGA
AATATATTGATACGAAGCATATAACATTGTTGGATCAGAGTCCTCATCAA
ATGGCAAAGGCGAAGGCTAAGAAAACATTGGAAGGCGTCACGTTCGTAGA
AGGAGATGCCGAAAACCTGCCATTCAGCAGTGGAGAATATGATAGATACA
CATCGGCAGGCTCTATCGAATACTGGCCGGAACCGCAGCGAGGTATTGCT
GAGGCATATCGCGTGTTGAAGCCGGGCGGAGTAGCTACTCTCATTGGTCC
AGTGCGTGCCACAAACTGGTTCTCGAGATTCTGGTGCGACCTTTGGATGT
TGTTTCCCATGGAGTCGGAATACCGTGAATGGTTCAATGCAGCTGGTTTC
AAGGACTTGAAAATTTCCTATATTGGTCCGGAAGCATATAAGGGCGTCCG
TCAGCATGGTCTAATCATGGGCCTCACGATCACCGGTACCAAACCCACTA
ACGGACCCATGGAAAGCCCTGTGAAGCTTGGCGACATGCTTGAATCTAGA
AAACGAGAATTATCTTTGACTGATCGGCTCCTTTTCCTTCCAAAGTGGGT
TTTCGGTGTCTTAGCCGGAGGCTACTATTTCATTCTTCCGTTTCTAATTA
TCCTCTATGCTGCGCTGTTCATTCATCGAAAGGATGAATAA