Gchil6838.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil6838.t1
Unique Name	Gchil6838.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	640

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:285929..287848 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX45057
PFAMs	eIF2A
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15026
Evalue	9.53e-113
EggNOG OGs	COG5354@1\|root,KOG2315@2759\|Eukaryota
Description	ribosome binding
COG category	J
BRITE	ko00000,ko03012,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6838	Gchil6838	Gracilaria chilensis NLEC103_M9 male	gene	tig00004376_pilon 285929..287848 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6838.t1.start1	Gchil6838.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004376_pilon 285929..285931 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6838.t1.CDS1	Gchil6838.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004376_pilon 285929..287848 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6838.t1.exon1	Gchil6838.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004376_pilon 285929..287848 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6838.t1.stop1	Gchil6838.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004376_pilon 287846..287848 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil6838.t1	Gchil6838.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004376_pilon 285929..287848 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004376_pilon:285929..287848+
coding sequence from alignment at tig00004376_pilon:285929..287848+

mRNA sequence

>Gchil6838.t1 ID=Gchil6838.t1|Name=Gchil6838.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=640bp
MMASPNQTKQESVHSRPLAVLVREKTRAFVDHFPFQEGIRSEQRRSLPES
RDSQFAPHGDYFFSIEGENQAAVVRDSVTAHVNSSCGGLGDEQTPLKVNF
AAFSPRGTYLLTWCRPVSGVSVRNLVVYNAKTGQRLGGFHQKVFHAGFWP
TIQWSDDESVAAHCVTNNVHFYKSNDLEKPPYAILRVPGISKFALSPGPA
PYTIATFMPSLRGSPGKICIFKHPDEGGEELASRSAFNADSASFKWNSKG
KAVLAMISTNIDNEGKSYYGNSEVFFMDNLGVYNQRVDLPQQGPTYSAAW
SPTGNEFVIIYGFMPARATMFNEKCEPVFDFGTGSRNEIHFSPHGRFVAL
GGFGNLPGAVEFWDKNKMVLVGRAQMSCTTMCSWSPCSRYFLGATTFPRL
RVDNGFKVVRFDGKLVHEHKLGDSHLYQAVFKPALRGVYADPKFTMDDML
GGATQPVGLLNATNGNTEQNVGVYRPPGSRGMGATLKLHQHLAAGKVDKS
AFLSSGVGNSASEPRSTKGKKIVPGMDPDLMDSGPSKATIARRKKKERER
ELKAKQAAQPTSTEQTSATHLNPQEITSIGDAEKRAKRLRKKLRGIEILE
QSKADGKELNEEQEEKLRTKSSVKDELVDVEKRIYELSV*

spliced messenger RNA

>Gchil6838.t1 ID=Gchil6838.t1|Name=Gchil6838.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1920bp|location=Sequence derived from alignment at tig00004376_pilon:285929..287848+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCGTCCCCAAATCAAACCAAACAAGAAAGCGTTCATTCTCGACC
ACTCGCTGTCCTCGTTCGAGAAAAAACTCGTGCTTTTGTCGATCATTTCC
CCTTTCAAGAAGGTATACGAAGTGAACAACGTAGATCACTTCCGGAAAGC
AGGGATTCGCAGTTCGCTCCGCATGGAGACTACTTTTTCTCAATTGAAGG
CGAAAATCAAGCAGCTGTTGTTCGAGACAGTGTGACAGCACATGTAAACA
GCTCTTGTGGTGGGCTGGGTGATGAGCAAACGCCCCTCAAAGTCAACTTT
GCCGCATTTTCTCCTCGTGGAACTTATCTCCTCACATGGTGTCGCCCAGT
GAGTGGTGTGTCCGTCCGCAATTTGGTTGTTTACAACGCTAAGACTGGTC
AACGACTCGGAGGTTTCCATCAGAAAGTATTTCATGCTGGATTTTGGCCG
ACGATTCAGTGGAGCGATGACGAGTCTGTTGCTGCCCATTGTGTGACTAA
TAACGTGCACTTCTACAAATCCAATGACCTTGAGAAACCTCCATATGCAA
TTTTACGTGTCCCAGGAATCTCAAAGTTTGCTCTAAGTCCTGGACCGGCA
CCGTACACGATTGCGACATTCATGCCGAGTTTAAGAGGCTCTCCAGGTAA
GATTTGTATTTTCAAGCATCCTGATGAGGGGGGTGAAGAATTGGCTTCAC
GCTCGGCTTTCAATGCCGATTCCGCCTCTTTCAAATGGAACTCTAAAGGA
AAAGCAGTTCTTGCCATGATCAGTACAAACATTGACAATGAGGGTAAGAG
CTATTATGGAAACAGCGAGGTGTTCTTCATGGATAATCTTGGCGTGTACA
ATCAAAGGGTTGATTTGCCTCAACAAGGACCGACTTATAGCGCGGCATGG
AGTCCTACTGGTAACGAATTCGTTATCATCTATGGATTCATGCCGGCCCG
TGCTACTATGTTCAACGAAAAATGCGAGCCAGTGTTTGACTTCGGCACTG
GCTCCCGAAACGAGATACATTTTTCACCGCATGGGCGGTTCGTTGCCCTT
GGTGGTTTCGGCAATCTGCCTGGTGCAGTGGAGTTTTGGGATAAGAACAA
AATGGTGCTCGTTGGTCGAGCCCAGATGTCATGCACTACGATGTGTAGTT
GGTCCCCATGCTCAAGATACTTTCTTGGAGCAACTACTTTTCCTAGGCTA
AGAGTCGACAACGGGTTCAAAGTTGTCAGATTTGACGGGAAGTTGGTTCA
TGAACATAAGCTGGGGGATAGTCACCTTTATCAAGCCGTTTTTAAGCCTG
CCCTGCGAGGTGTGTATGCTGATCCGAAGTTTACAATGGACGACATGCTC
GGGGGAGCAACTCAGCCTGTTGGTCTATTGAATGCTACTAATGGGAACAC
AGAACAGAACGTAGGTGTTTATCGTCCGCCTGGAAGTAGAGGAATGGGTG
CTACTCTTAAACTCCACCAACATCTTGCTGCTGGTAAAGTTGATAAGAGT
GCTTTCCTCTCTAGCGGCGTGGGTAATTCTGCCTCTGAGCCTCGCTCTAC
AAAAGGGAAGAAAATTGTTCCTGGGATGGATCCGGATTTAATGGACTCTG
GCCCTTCAAAGGCGACCATCGCTCGTCGTAAAAAGAAGGAACGCGAACGC
GAATTGAAAGCCAAACAAGCGGCCCAACCAACGTCAACGGAACAGACCAG
CGCTACACACCTTAACCCCCAGGAAATAACTAGCATAGGAGATGCTGAGA
AGCGTGCGAAGAGGCTTCGAAAGAAGCTCCGTGGCATCGAAATATTGGAG
CAAAGCAAGGCTGATGGAAAGGAACTCAACGAAGAGCAAGAAGAAAAGCT
TCGAACAAAGTCTTCTGTCAAAGACGAACTGGTGGATGTGGAGAAAAGAA
TTTATGAATTGTCCGTTTGA

protein sequence of Gchil6838.t1

>Gchil6838.t1 ID=Gchil6838.t1|Name=Gchil6838.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=640bp
MMASPNQTKQESVHSRPLAVLVREKTRAFVDHFPFQEGIRSEQRRSLPES
RDSQFAPHGDYFFSIEGENQAAVVRDSVTAHVNSSCGGLGDEQTPLKVNF
AAFSPRGTYLLTWCRPVSGVSVRNLVVYNAKTGQRLGGFHQKVFHAGFWP
TIQWSDDESVAAHCVTNNVHFYKSNDLEKPPYAILRVPGISKFALSPGPA
PYTIATFMPSLRGSPGKICIFKHPDEGGEELASRSAFNADSASFKWNSKG
KAVLAMISTNIDNEGKSYYGNSEVFFMDNLGVYNQRVDLPQQGPTYSAAW
SPTGNEFVIIYGFMPARATMFNEKCEPVFDFGTGSRNEIHFSPHGRFVAL
GGFGNLPGAVEFWDKNKMVLVGRAQMSCTTMCSWSPCSRYFLGATTFPRL
RVDNGFKVVRFDGKLVHEHKLGDSHLYQAVFKPALRGVYADPKFTMDDML
GGATQPVGLLNATNGNTEQNVGVYRPPGSRGMGATLKLHQHLAAGKVDKS
AFLSSGVGNSASEPRSTKGKKIVPGMDPDLMDSGPSKATIARRKKKERER
ELKAKQAAQPTSTEQTSATHLNPQEITSIGDAEKRAKRLRKKLRGIEILE
QSKADGKELNEEQEEKLRTKSSVKDELVDVEKRIYELSV*

mRNA from alignment at tig00004376_pilon:285929..287848+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil6838.t1 ID=Gchil6838.t1|Name=Gchil6838.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1920bp|location=Sequence derived from alignment at tig00004376_pilon:285929..287848+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCGTCCCCAAATCAAACCAAACAAGAAAGCGTTCATTCTCGACC
ACTCGCTGTCCTCGTTCGAGAAAAAACTCGTGCTTTTGTCGATCATTTCC
CCTTTCAAGAAGGTATACGAAGTGAACAACGTAGATCACTTCCGGAAAGC
AGGGATTCGCAGTTCGCTCCGCATGGAGACTACTTTTTCTCAATTGAAGG
CGAAAATCAAGCAGCTGTTGTTCGAGACAGTGTGACAGCACATGTAAACA
GCTCTTGTGGTGGGCTGGGTGATGAGCAAACGCCCCTCAAAGTCAACTTT
GCCGCATTTTCTCCTCGTGGAACTTATCTCCTCACATGGTGTCGCCCAGT
GAGTGGTGTGTCCGTCCGCAATTTGGTTGTTTACAACGCTAAGACTGGTC
AACGACTCGGAGGTTTCCATCAGAAAGTATTTCATGCTGGATTTTGGCCG
ACGATTCAGTGGAGCGATGACGAGTCTGTTGCTGCCCATTGTGTGACTAA
TAACGTGCACTTCTACAAATCCAATGACCTTGAGAAACCTCCATATGCAA
TTTTACGTGTCCCAGGAATCTCAAAGTTTGCTCTAAGTCCTGGACCGGCA
CCGTACACGATTGCGACATTCATGCCGAGTTTAAGAGGCTCTCCAGGTAA
GATTTGTATTTTCAAGCATCCTGATGAGGGGGGTGAAGAATTGGCTTCAC
GCTCGGCTTTCAATGCCGATTCCGCCTCTTTCAAATGGAACTCTAAAGGA
AAAGCAGTTCTTGCCATGATCAGTACAAACATTGACAATGAGGGTAAGAG
CTATTATGGAAACAGCGAGGTGTTCTTCATGGATAATCTTGGCGTGTACA
ATCAAAGGGTTGATTTGCCTCAACAAGGACCGACTTATAGCGCGGCATGG
AGTCCTACTGGTAACGAATTCGTTATCATCTATGGATTCATGCCGGCCCG
TGCTACTATGTTCAACGAAAAATGCGAGCCAGTGTTTGACTTCGGCACTG
GCTCCCGAAACGAGATACATTTTTCACCGCATGGGCGGTTCGTTGCCCTT
GGTGGTTTCGGCAATCTGCCTGGTGCAGTGGAGTTTTGGGATAAGAACAA
AATGGTGCTCGTTGGTCGAGCCCAGATGTCATGCACTACGATGTGTAGTT
GGTCCCCATGCTCAAGATACTTTCTTGGAGCAACTACTTTTCCTAGGCTA
AGAGTCGACAACGGGTTCAAAGTTGTCAGATTTGACGGGAAGTTGGTTCA
TGAACATAAGCTGGGGGATAGTCACCTTTATCAAGCCGTTTTTAAGCCTG
CCCTGCGAGGTGTGTATGCTGATCCGAAGTTTACAATGGACGACATGCTC
GGGGGAGCAACTCAGCCTGTTGGTCTATTGAATGCTACTAATGGGAACAC
AGAACAGAACGTAGGTGTTTATCGTCCGCCTGGAAGTAGAGGAATGGGTG
CTACTCTTAAACTCCACCAACATCTTGCTGCTGGTAAAGTTGATAAGAGT
GCTTTCCTCTCTAGCGGCGTGGGTAATTCTGCCTCTGAGCCTCGCTCTAC
AAAAGGGAAGAAAATTGTTCCTGGGATGGATCCGGATTTAATGGACTCTG
GCCCTTCAAAGGCGACCATCGCTCGTCGTAAAAAGAAGGAACGCGAACGC
GAATTGAAAGCCAAACAAGCGGCCCAACCAACGTCAACGGAACAGACCAG
CGCTACACACCTTAACCCCCAGGAAATAACTAGCATAGGAGATGCTGAGA
AGCGTGCGAAGAGGCTTCGAAAGAAGCTCCGTGGCATCGAAATATTGGAG
CAAAGCAAGGCTGATGGAAAGGAACTCAACGAAGAGCAAGAAGAAAAGCT
TCGAACAAAGTCTTCTGTCAAAGACGAACTGGTGGATGTGGAGAAAAGAA
TTTATGAATTGTCCGTTTGA

Coding sequence (CDS) from alignment at tig00004376_pilon:285929..287848+

>Gchil6838.t1 ID=Gchil6838.t1|Name=Gchil6838.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1920bp|location=Sequence derived from alignment at tig00004376_pilon:285929..287848+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCGTCCCCAAATCAAACCAAACAAGAAAGCGTTCATTCTCGACC
ACTCGCTGTCCTCGTTCGAGAAAAAACTCGTGCTTTTGTCGATCATTTCC
CCTTTCAAGAAGGTATACGAAGTGAACAACGTAGATCACTTCCGGAAAGC
AGGGATTCGCAGTTCGCTCCGCATGGAGACTACTTTTTCTCAATTGAAGG
CGAAAATCAAGCAGCTGTTGTTCGAGACAGTGTGACAGCACATGTAAACA
GCTCTTGTGGTGGGCTGGGTGATGAGCAAACGCCCCTCAAAGTCAACTTT
GCCGCATTTTCTCCTCGTGGAACTTATCTCCTCACATGGTGTCGCCCAGT
GAGTGGTGTGTCCGTCCGCAATTTGGTTGTTTACAACGCTAAGACTGGTC
AACGACTCGGAGGTTTCCATCAGAAAGTATTTCATGCTGGATTTTGGCCG
ACGATTCAGTGGAGCGATGACGAGTCTGTTGCTGCCCATTGTGTGACTAA
TAACGTGCACTTCTACAAATCCAATGACCTTGAGAAACCTCCATATGCAA
TTTTACGTGTCCCAGGAATCTCAAAGTTTGCTCTAAGTCCTGGACCGGCA
CCGTACACGATTGCGACATTCATGCCGAGTTTAAGAGGCTCTCCAGGTAA
GATTTGTATTTTCAAGCATCCTGATGAGGGGGGTGAAGAATTGGCTTCAC
GCTCGGCTTTCAATGCCGATTCCGCCTCTTTCAAATGGAACTCTAAAGGA
AAAGCAGTTCTTGCCATGATCAGTACAAACATTGACAATGAGGGTAAGAG
CTATTATGGAAACAGCGAGGTGTTCTTCATGGATAATCTTGGCGTGTACA
ATCAAAGGGTTGATTTGCCTCAACAAGGACCGACTTATAGCGCGGCATGG
AGTCCTACTGGTAACGAATTCGTTATCATCTATGGATTCATGCCGGCCCG
TGCTACTATGTTCAACGAAAAATGCGAGCCAGTGTTTGACTTCGGCACTG
GCTCCCGAAACGAGATACATTTTTCACCGCATGGGCGGTTCGTTGCCCTT
GGTGGTTTCGGCAATCTGCCTGGTGCAGTGGAGTTTTGGGATAAGAACAA
AATGGTGCTCGTTGGTCGAGCCCAGATGTCATGCACTACGATGTGTAGTT
GGTCCCCATGCTCAAGATACTTTCTTGGAGCAACTACTTTTCCTAGGCTA
AGAGTCGACAACGGGTTCAAAGTTGTCAGATTTGACGGGAAGTTGGTTCA
TGAACATAAGCTGGGGGATAGTCACCTTTATCAAGCCGTTTTTAAGCCTG
CCCTGCGAGGTGTGTATGCTGATCCGAAGTTTACAATGGACGACATGCTC
GGGGGAGCAACTCAGCCTGTTGGTCTATTGAATGCTACTAATGGGAACAC
AGAACAGAACGTAGGTGTTTATCGTCCGCCTGGAAGTAGAGGAATGGGTG
CTACTCTTAAACTCCACCAACATCTTGCTGCTGGTAAAGTTGATAAGAGT
GCTTTCCTCTCTAGCGGCGTGGGTAATTCTGCCTCTGAGCCTCGCTCTAC
AAAAGGGAAGAAAATTGTTCCTGGGATGGATCCGGATTTAATGGACTCTG
GCCCTTCAAAGGCGACCATCGCTCGTCGTAAAAAGAAGGAACGCGAACGC
GAATTGAAAGCCAAACAAGCGGCCCAACCAACGTCAACGGAACAGACCAG
CGCTACACACCTTAACCCCCAGGAAATAACTAGCATAGGAGATGCTGAGA
AGCGTGCGAAGAGGCTTCGAAAGAAGCTCCGTGGCATCGAAATATTGGAG
CAAAGCAAGGCTGATGGAAAGGAACTCAACGAAGAGCAAGAAGAAAAGCT
TCGAACAAAGTCTTCTGTCAAAGACGAACTGGTGGATGTGGAGAAAAGAA
TTTATGAATTGTCCGTTTGA