Gchil6886.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil6886.t1
Unique Name	Gchil6886.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	369

Homology

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BLAST of Gchil6886.t1 vs. uniprot
Match: A0A2V3IP02_9FLOR (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IP02_9FLOR)

HSP 1 Score: 468 bits (1205), Expect = 1.900e-162
Identity = 228/363 (62.81%), Postives = 287/363 (79.06%), Query Frame = 0

Query:    1 MSHRTAPVFDTSTNY--------RRPRTEKSFQIFDALDHARFDHVRRLAATNPACLQATKRVSADVPPQSVVDYALSNCRTWNALLEHCRRTGIALPHAEDLTFPRRLASMKSIIVWLLAQPSVALPVLAPLHTAVLCELTDAFHILLQRAPHLARSVDARGKTPLHLVCALAVYTSSDSALRFVRLLHASAADFNARDADXXXXXXNLVAALSHSQPAYGLVRRRRAGNTLAAVVPLLDELLACGADIHYHDLDGASVMEHALHSGLDYLVIAQRASILRHRMCASPSALKWRHRPAHVTGIWSCLSEELVCKIFLHLSPKHVATGIGATCSALRKIALSEPLWRHLDTSRCLFKLRARLR 355
            MS RT P FD S NY         + + + S QIFDALDHARFD VRR+ A++P CL ATK V++ +PPQS++DYAL+NCRTWNALLEHCRRTGIALPHAEDLTFPRRL+SMKSI+VWLL QP+V+LP   PLHTAV+CELT+AF ILL+RAPHLA SVD RG+TPLH VCA AVYTS D  +R++  LHA+ ADFNA D D      +L++AL+ S+P YGLVRRRR+GN L+++VP+LDELLACGADI+++D  G++ +E AL SGLDY+V+AQRA++LR R+C SPSA  +    AHV+G  +CLS++L+ KIF +LSPK V TG+G TC  LR+IA+S+ LWRHL+T+RCL  LR+ LR
Sbjct:    1 MSRRTTPFFDVSRNYPSEFNFCRMKSKEQPSVQIFDALDHARFDLVRRIVASDPNCLFATKSVNSHIPPQSILDYALNNCRTWNALLEHCRRTGIALPHAEDLTFPRRLSSMKSIVVWLLLQPNVSLPKQTPLHTAVVCELTEAFEILLKRAPHLAASVDTRGRTPLHTVCAFAVYTSCDQVIRYISQLHAAGADFNACDRDGKTPLRSLLSALNESEPVYGLVRRRRSGNNLSSMVPVLDELLACGADIYHNDAKGSTAIELALISGLDYIVLAQRANLLRDRICRSPSARNYASAAAHVSGNMACLSDDLLFKIFTYLSPKQVITGVGVTCVGLRRIAVSDELWRHLETARCLALLRSSLR 363

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BLAST of Gchil6886.t1 vs. uniprot
Match: R7QUH6_CHOCR (F-box domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUH6_CHOCR)

HSP 1 Score: 267 bits (683), Expect = 1.460e-82
Identity = 163/389 (41.90%), Postives = 218/389 (56.04%), Query Frame = 0

Query:    1 MSHRTAPVFDTSTNY------RRPRTEKSF-------------------QIFDALDHARFDHVRRLAATNPACLQATKR------VSADVPPQSVVDYALSNCRTWNALLEHCRRTGIALPHA-EDLTFPRRLASMKSIIVWLLAQPSVALPVLAPLHTAVLCELTDAFHILLQRAPHLARSVDARGKTPLHLVCALAVYTSSDSALRFVRLLHASAADFNARDADXXXXXXNLVAALSHSQPAYGLVRRRRAGNTLAAVVPLLDELLACGADIHYHDLDGASVMEHALHSGLDYLVIAQRASILRHRMCASPSALKW--RHRPAHVTGIWSCLSEELVCKIFLHLSPKHVATGIGATCSALRKIALSEPLWRHLDTSRCLFKLRARLR 355
            MS RTAP F  +  +      RR     SF                    +F+ALD ARFD VRR  + +P  L AT        V+A     SVV+YAL+NCRTW AL++HC+RTGIA      D TF  RL+SM  I+VWLL+ P V  P  +PLHTA+ C+       LL++ P LA S DARGKTPLH+ C ++   S      ++RLL  + AD NA D +      +LVA+L+ + PAYGLVRRRR   +L++V+P L+E+L  GAD++  D  G S M+ AL  G DYLV+A RA+ L  R+C S  A +         + G+W  L E++V KI   LSPK    GIGATC  LR+IA+S+ +W    T+  +  +R  LR
Sbjct:   45 MSRRTAPAFSDTLRWNSFNSARRHSHGHSFLPRRLDAAHVKPSSHALRSSLFEALDQARFDQVRRAISASPDALLATSTPRTALAVNASSETLSVVEYALNNCRTWLALIQHCQRTGIATSSTIGDFTFRERLSSMSLILVWLLSVPGVPPPKHSPLHTAISCKFDAVCAALLKKYPVLATSTDARGKTPLHIACGMSSQMSPAHTAAYIRLLITAGADVNAVDVERRTPLHDLVASLNVAAPAYGLVRRRRLLTSLSSVLPTLNEMLINGADMYLPDASGDSAMDVALAGGTDYLVMAIRANWLYERICESEYAARVCAEQGSGTIAGLWGTLPEDVVMKILRKLSPKDAVGGIGATCHGLRRIAVSKHVWFRYTTNYSMAVIRESLR 433

The following BLAST results are available for this feature:

BLAST of Gchil6886.t1 vs. uniprot

BLAST of Gchil6886.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IP02_9FLOR	1.900e-162	62.81	F-box domain-containing protein n=1 Tax=Gracilario...	[more]
R7QUH6_CHOCR	1.460e-82	41.90	F-box domain-containing protein n=1 Tax=Chondrus c...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 293..367 e-value: 9.9E-6 score: 26.7
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 302..343 e-value: 2.0E-5 score: 24.4
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 109..280 e-value: 9.1E-15 score: 56.7
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 123..260
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 289..350

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004376_pilon	contig	tig00004376_pilon:591974..593080 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil6886.t1	Gchil6886.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004376_pilon 591974..593080 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil6886.t1 ID=Gchil6886.t1|Name=Gchil6886.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=369bp
MSHRTAPVFDTSTNYRRPRTEKSFQIFDALDHARFDHVRRLAATNPACLQ
ATKRVSADVPPQSVVDYALSNCRTWNALLEHCRRTGIALPHAEDLTFPRR
LASMKSIIVWLLAQPSVALPVLAPLHTAVLCELTDAFHILLQRAPHLARS
VDARGKTPLHLVCALAVYTSSDSALRFVRLLHASAADFNARDADGKTPLH
NLVAALSHSQPAYGLVRRRRAGNTLAAVVPLLDELLACGADIHYHDLDGA
SVMEHALHSGLDYLVIAQRASILRHRMCASPSALKWRHRPAHVTGIWSCL
SEELVCKIFLHLSPKHVATGIGATCSALRKIALSEPLWRHLDTSRCLFKL
RARLRCSAQLTPASFPQL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR001810	F-box_dom
IPR036770	Ankyrin_rpt-contain_sf
IPR036047	F-box-like_dom_sf