Gchil6911.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6911.t1
Unique NameGchil6911.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length86
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:673565..673975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6911Gchil6911Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 673565..673975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6911.t1Gchil6911.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 673565..673975 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6911.t1.start1Gchil6911.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 673565..673567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6911.t1.CDS1Gchil6911.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 673565..673640 +
Gchil6911.t1.CDS2Gchil6911.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 673709..673872 +
Gchil6911.t1.CDS3Gchil6911.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 673958..673975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6911.t1.exon1Gchil6911.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 673565..673640 +
Gchil6911.t1.exon2Gchil6911.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 673709..673872 +
Gchil6911.t1.exon3Gchil6911.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 673958..673975 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6911.t1.intron1Gchil6911.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 673641..673708 +
Gchil6911.t1.intron2Gchil6911.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004376_pilon 673873..673957 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6911.t1.stop1Gchil6911.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 673973..673975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6911.t1 ID=Gchil6911.t1|Name=Gchil6911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=86bp
MMRQPLIRFRYAIQKARAAGAQHPALQNASASSLKAAEVATQPVSRNENP
APPGVVRTSQRLDTAPKRAIIPEEEMDAIMLGGAL*
back to top

spliced messenger RNA

>Gchil6911.t1 ID=Gchil6911.t1|Name=Gchil6911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=258bp|location=Sequence derived from alignment at tig00004376_pilon:673565..673975+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAGACAGCCCCTCATAAGATTTCGATATGCTATTCAAAAAGCTCG
AGCCGCTGGCGCTCAGCATCCAGCTCTGCAAAACGCATCAGCTTCTTCTT
TGAAAGCAGCCGAAGTGGCGACTCAGCCAGTGTCCCGGAATGAAAATCCC
GCACCCCCGGGAGTGGTACGAACGTCTCAAAGACTAGATACAGCTCCGAA
GCGAGCAATTATCCCTGAAGAGGAAATGGATGCGATTATGCTTGGCGGTG
CCCTGTAA
back to top

protein sequence of Gchil6911.t1

>Gchil6911.t1 ID=Gchil6911.t1|Name=Gchil6911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=86bp
MMRQPLIRFRYAIQKARAAGAQHPALQNASASSLKAAEVATQPVSRNENP
APPGVVRTSQRLDTAPKRAIIPEEEMDAIMLGGAL*
back to top

mRNA from alignment at tig00004376_pilon:673565..673975+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6911.t1 ID=Gchil6911.t1|Name=Gchil6911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=411bp|location=Sequence derived from alignment at tig00004376_pilon:673565..673975+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGAGACAGCCCCTCATAAGATTTCGATATGCTATTCAAAAAGCTCG
AGCCGCTGGCGCTCAGCATCCAGCTCGTAAGTGAAGCAGCTCATTTTTTA
CCTCAGCAGGCGCAAAAGAATCTGACAAAATATCGTTTCGTTAGTGCAAA
ACGCATCAGCTTCTTCTTTGAAAGCAGCCGAAGTGGCGACTCAGCCAGTG
TCCCGGAATGAAAATCCCGCACCCCCGGGAGTGGTACGAACGTCTCAAAG
ACTAGATACAGCTCCGAAGCGAGCAATTATCCCTGAAGAGGAAATGGATG
CGATTATGGTACGTCTTCTATCCCCAAACAGGTCCAATAGGTCTTCCTTC
TTTGAGACTTGTTTTCTAACGCATATTGGCATTCCATGTGCAGCTTGGCG
GTGCCCTGTAA
back to top

Coding sequence (CDS) from alignment at tig00004376_pilon:673565..673975+

>Gchil6911.t1 ID=Gchil6911.t1|Name=Gchil6911.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=258bp|location=Sequence derived from alignment at tig00004376_pilon:673565..673975+ (Gracilaria chilensis NLEC103_M9 male)
ATGATGAGACAGCCCCTCATAAGATTTCGATATGCTATTCAAAAAGCTCG
AGCCGCTGGCGCTCAGCATCCAGCTCTGCAAAACGCATCAGCTTCTTCTT
TGAAAGCAGCCGAAGTGGCGACTCAGCCAGTGTCCCGGAATGAAAATCCC
GCACCCCCGGGAGTGGTACGAACGTCTCAAAGACTAGATACAGCTCCGAA
GCGAGCAATTATCCCTGAAGAGGAAATGGATGCGATTATGCTTGGCGGTG
CCCTGTAA
back to top