Gchil6888.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6888.t1
Unique NameGchil6888.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:597470..599083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002501323.1
PFAMsCpn60_TCP1
Max annot lvl3041|Chlorophyta
KEGG koko:K09497
Evalue6.9e-267
EggNOG OGsCOG0459@1|root,KOG0357@2759|Eukaryota,37M6X@33090|Viridiplantae,34JX0@3041|Chlorophyta
Descriptionassists the folding of proteins upon ATP hydrolysis
COG categoryO
BRITEko00000,ko03036,ko03110,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6888Gchil6888Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 597470..599083 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6888.t1.stop1Gchil6888.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 597470..597472 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6888.t1.CDS1Gchil6888.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 597470..599083 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6888.t1.exon1Gchil6888.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 597470..599083 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6888.t1.start1Gchil6888.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 599081..599083 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6888.t1Gchil6888.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 597470..599083 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6888.t1 ID=Gchil6888.t1|Name=Gchil6888.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=538bp
MSLAFDENGRPFIIIREQDKKTRLKGIAALKSNIAAARAVARTLRTSLGP
KGMDKMLQSPDGDITVTNDGATILQEMDVENQIASLMVELSKSQDDEVGD
GTTGVVVLAGALLEQAEKLLDKGIHPTRISEGFERATDLVIPLLRKLSTP
LDYSSSNGYEELVKTAMTTLNSKVVNRMKREFAEICVKAVMSVADIERKD
VNLDLIKLDGKVGGKLEDTKLVNGIVVDKDFSHPQMPRQVNDAKICVLTC
PFEPPKPKTKHKLDINTVEQYKDMQEAERKYFTDMVDAVKKSGANLVVCQ
WGFDDEANHLLYKNELPAIRWVGGSEIELIALATGARIIPRFQEISGEKL
GSAKTVRELSFGTTRDNVIVLEDCALSKSVTIFVRGGNKMIIEEAKRSIH
DALCVVRNLIRDNRIVYGGGSIEIACSVLASETADQIPGVEQYAVRGFAA
ALDNVAMALAENSGLPPIETLASVKSRQVKEGNPFLGVDCMNTGTNDMRK
QNVYEALSSKIQQLQHAAQMVKMILKIDDTIAPAEYE*
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spliced messenger RNA

>Gchil6888.t1 ID=Gchil6888.t1|Name=Gchil6888.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00004376_pilon:597470..599083- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTTGGCTTTTGACGAAAATGGCCGACCGTTTATTATTATCAGAGA
ACAAGACAAGAAGACGAGATTGAAGGGAATCGCAGCTCTGAAGTCTAACA
TAGCTGCAGCTCGTGCTGTTGCTCGCACTTTAAGGACTTCATTGGGACCA
AAAGGAATGGACAAAATGTTACAATCGCCAGATGGAGACATCACCGTCAC
TAACGATGGTGCCACTATTTTGCAAGAGATGGATGTCGAGAATCAAATCG
CGAGCCTTATGGTAGAACTTTCGAAGTCACAGGATGATGAAGTTGGGGAC
GGTACCACAGGCGTTGTCGTGCTAGCCGGTGCCCTTTTGGAACAGGCAGA
AAAGTTGCTTGACAAAGGAATTCATCCTACGAGAATATCCGAAGGTTTTG
AGAGAGCTACTGATCTTGTGATACCTTTGCTTCGTAAGCTTTCAACTCCT
TTGGATTATAGCAGCTCAAATGGTTACGAAGAACTTGTCAAGACTGCGAT
GACGACGTTGAACTCCAAGGTTGTCAACCGTATGAAACGAGAGTTTGCGG
AAATCTGTGTCAAAGCCGTCATGTCTGTGGCAGATATTGAACGGAAAGAT
GTAAATCTAGATTTGATAAAACTTGATGGCAAGGTTGGTGGAAAACTAGA
AGACACAAAATTGGTCAATGGTATCGTCGTCGACAAAGATTTCAGCCATC
CACAAATGCCCCGCCAGGTCAACGACGCGAAGATATGTGTTCTGACATGC
CCGTTTGAGCCGCCGAAACCAAAGACAAAGCACAAGCTTGACATAAATAC
TGTGGAGCAGTATAAAGACATGCAAGAAGCTGAACGTAAGTATTTCACTG
ACATGGTTGACGCAGTTAAGAAATCTGGAGCCAACCTTGTGGTTTGTCAG
TGGGGCTTCGATGATGAAGCCAACCATTTACTGTACAAAAACGAGCTACC
TGCCATCCGCTGGGTTGGGGGATCGGAAATTGAGCTCATCGCTCTCGCGA
CCGGTGCCCGGATCATTCCTAGATTCCAAGAGATAAGCGGAGAAAAGCTA
GGATCGGCAAAAACCGTTCGTGAGCTGTCTTTTGGTACTACACGGGACAA
CGTTATTGTTTTGGAGGACTGTGCTCTTTCCAAGTCCGTTACAATCTTCG
TAAGAGGTGGGAACAAAATGATAATCGAGGAGGCGAAACGGAGCATCCAT
GATGCCCTATGTGTCGTGAGAAACCTGATCCGCGATAATCGTATTGTTTA
CGGAGGAGGATCCATCGAAATTGCGTGCTCAGTGCTGGCCTCTGAAACTG
CGGATCAGATTCCTGGAGTTGAGCAATACGCAGTGAGGGGCTTTGCAGCT
GCCTTAGATAACGTTGCGATGGCTCTCGCGGAGAACTCAGGTCTCCCGCC
CATTGAGACGTTAGCGTCTGTAAAATCGAGGCAGGTGAAAGAAGGGAATC
CGTTCCTTGGCGTTGACTGTATGAATACTGGAACGAATGACATGCGCAAG
CAGAACGTTTATGAGGCCCTGTCGTCGAAAATTCAACAACTGCAACATGC
GGCCCAGATGGTGAAGATGATACTGAAGATAGACGACACGATAGCTCCAG
CAGAGTACGAGTAG
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protein sequence of Gchil6888.t1

>Gchil6888.t1 ID=Gchil6888.t1|Name=Gchil6888.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=538bp
MSLAFDENGRPFIIIREQDKKTRLKGIAALKSNIAAARAVARTLRTSLGP
KGMDKMLQSPDGDITVTNDGATILQEMDVENQIASLMVELSKSQDDEVGD
GTTGVVVLAGALLEQAEKLLDKGIHPTRISEGFERATDLVIPLLRKLSTP
LDYSSSNGYEELVKTAMTTLNSKVVNRMKREFAEICVKAVMSVADIERKD
VNLDLIKLDGKVGGKLEDTKLVNGIVVDKDFSHPQMPRQVNDAKICVLTC
PFEPPKPKTKHKLDINTVEQYKDMQEAERKYFTDMVDAVKKSGANLVVCQ
WGFDDEANHLLYKNELPAIRWVGGSEIELIALATGARIIPRFQEISGEKL
GSAKTVRELSFGTTRDNVIVLEDCALSKSVTIFVRGGNKMIIEEAKRSIH
DALCVVRNLIRDNRIVYGGGSIEIACSVLASETADQIPGVEQYAVRGFAA
ALDNVAMALAENSGLPPIETLASVKSRQVKEGNPFLGVDCMNTGTNDMRK
QNVYEALSSKIQQLQHAAQMVKMILKIDDTIAPAEYE*
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mRNA from alignment at tig00004376_pilon:597470..599083-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6888.t1 ID=Gchil6888.t1|Name=Gchil6888.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00004376_pilon:597470..599083- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTGGCTTTTGACGAAAATGGCCGACCGTTTATTATTATCAGAGA
ACAAGACAAGAAGACGAGATTGAAGGGAATCGCAGCTCTGAAGTCTAACA
TAGCTGCAGCTCGTGCTGTTGCTCGCACTTTAAGGACTTCATTGGGACCA
AAAGGAATGGACAAAATGTTACAATCGCCAGATGGAGACATCACCGTCAC
TAACGATGGTGCCACTATTTTGCAAGAGATGGATGTCGAGAATCAAATCG
CGAGCCTTATGGTAGAACTTTCGAAGTCACAGGATGATGAAGTTGGGGAC
GGTACCACAGGCGTTGTCGTGCTAGCCGGTGCCCTTTTGGAACAGGCAGA
AAAGTTGCTTGACAAAGGAATTCATCCTACGAGAATATCCGAAGGTTTTG
AGAGAGCTACTGATCTTGTGATACCTTTGCTTCGTAAGCTTTCAACTCCT
TTGGATTATAGCAGCTCAAATGGTTACGAAGAACTTGTCAAGACTGCGAT
GACGACGTTGAACTCCAAGGTTGTCAACCGTATGAAACGAGAGTTTGCGG
AAATCTGTGTCAAAGCCGTCATGTCTGTGGCAGATATTGAACGGAAAGAT
GTAAATCTAGATTTGATAAAACTTGATGGCAAGGTTGGTGGAAAACTAGA
AGACACAAAATTGGTCAATGGTATCGTCGTCGACAAAGATTTCAGCCATC
CACAAATGCCCCGCCAGGTCAACGACGCGAAGATATGTGTTCTGACATGC
CCGTTTGAGCCGCCGAAACCAAAGACAAAGCACAAGCTTGACATAAATAC
TGTGGAGCAGTATAAAGACATGCAAGAAGCTGAACGTAAGTATTTCACTG
ACATGGTTGACGCAGTTAAGAAATCTGGAGCCAACCTTGTGGTTTGTCAG
TGGGGCTTCGATGATGAAGCCAACCATTTACTGTACAAAAACGAGCTACC
TGCCATCCGCTGGGTTGGGGGATCGGAAATTGAGCTCATCGCTCTCGCGA
CCGGTGCCCGGATCATTCCTAGATTCCAAGAGATAAGCGGAGAAAAGCTA
GGATCGGCAAAAACCGTTCGTGAGCTGTCTTTTGGTACTACACGGGACAA
CGTTATTGTTTTGGAGGACTGTGCTCTTTCCAAGTCCGTTACAATCTTCG
TAAGAGGTGGGAACAAAATGATAATCGAGGAGGCGAAACGGAGCATCCAT
GATGCCCTATGTGTCGTGAGAAACCTGATCCGCGATAATCGTATTGTTTA
CGGAGGAGGATCCATCGAAATTGCGTGCTCAGTGCTGGCCTCTGAAACTG
CGGATCAGATTCCTGGAGTTGAGCAATACGCAGTGAGGGGCTTTGCAGCT
GCCTTAGATAACGTTGCGATGGCTCTCGCGGAGAACTCAGGTCTCCCGCC
CATTGAGACGTTAGCGTCTGTAAAATCGAGGCAGGTGAAAGAAGGGAATC
CGTTCCTTGGCGTTGACTGTATGAATACTGGAACGAATGACATGCGCAAG
CAGAACGTTTATGAGGCCCTGTCGTCGAAAATTCAACAACTGCAACATGC
GGCCCAGATGGTGAAGATGATACTGAAGATAGACGACACGATAGCTCCAG
CAGAGTACGAGTAG
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Coding sequence (CDS) from alignment at tig00004376_pilon:597470..599083-

>Gchil6888.t1 ID=Gchil6888.t1|Name=Gchil6888.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1614bp|location=Sequence derived from alignment at tig00004376_pilon:597470..599083- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTTGGCTTTTGACGAAAATGGCCGACCGTTTATTATTATCAGAGA
ACAAGACAAGAAGACGAGATTGAAGGGAATCGCAGCTCTGAAGTCTAACA
TAGCTGCAGCTCGTGCTGTTGCTCGCACTTTAAGGACTTCATTGGGACCA
AAAGGAATGGACAAAATGTTACAATCGCCAGATGGAGACATCACCGTCAC
TAACGATGGTGCCACTATTTTGCAAGAGATGGATGTCGAGAATCAAATCG
CGAGCCTTATGGTAGAACTTTCGAAGTCACAGGATGATGAAGTTGGGGAC
GGTACCACAGGCGTTGTCGTGCTAGCCGGTGCCCTTTTGGAACAGGCAGA
AAAGTTGCTTGACAAAGGAATTCATCCTACGAGAATATCCGAAGGTTTTG
AGAGAGCTACTGATCTTGTGATACCTTTGCTTCGTAAGCTTTCAACTCCT
TTGGATTATAGCAGCTCAAATGGTTACGAAGAACTTGTCAAGACTGCGAT
GACGACGTTGAACTCCAAGGTTGTCAACCGTATGAAACGAGAGTTTGCGG
AAATCTGTGTCAAAGCCGTCATGTCTGTGGCAGATATTGAACGGAAAGAT
GTAAATCTAGATTTGATAAAACTTGATGGCAAGGTTGGTGGAAAACTAGA
AGACACAAAATTGGTCAATGGTATCGTCGTCGACAAAGATTTCAGCCATC
CACAAATGCCCCGCCAGGTCAACGACGCGAAGATATGTGTTCTGACATGC
CCGTTTGAGCCGCCGAAACCAAAGACAAAGCACAAGCTTGACATAAATAC
TGTGGAGCAGTATAAAGACATGCAAGAAGCTGAACGTAAGTATTTCACTG
ACATGGTTGACGCAGTTAAGAAATCTGGAGCCAACCTTGTGGTTTGTCAG
TGGGGCTTCGATGATGAAGCCAACCATTTACTGTACAAAAACGAGCTACC
TGCCATCCGCTGGGTTGGGGGATCGGAAATTGAGCTCATCGCTCTCGCGA
CCGGTGCCCGGATCATTCCTAGATTCCAAGAGATAAGCGGAGAAAAGCTA
GGATCGGCAAAAACCGTTCGTGAGCTGTCTTTTGGTACTACACGGGACAA
CGTTATTGTTTTGGAGGACTGTGCTCTTTCCAAGTCCGTTACAATCTTCG
TAAGAGGTGGGAACAAAATGATAATCGAGGAGGCGAAACGGAGCATCCAT
GATGCCCTATGTGTCGTGAGAAACCTGATCCGCGATAATCGTATTGTTTA
CGGAGGAGGATCCATCGAAATTGCGTGCTCAGTGCTGGCCTCTGAAACTG
CGGATCAGATTCCTGGAGTTGAGCAATACGCAGTGAGGGGCTTTGCAGCT
GCCTTAGATAACGTTGCGATGGCTCTCGCGGAGAACTCAGGTCTCCCGCC
CATTGAGACGTTAGCGTCTGTAAAATCGAGGCAGGTGAAAGAAGGGAATC
CGTTCCTTGGCGTTGACTGTATGAATACTGGAACGAATGACATGCGCAAG
CAGAACGTTTATGAGGCCCTGTCGTCGAAAATTCAACAACTGCAACATGC
GGCCCAGATGGTGAAGATGATACTGAAGATAGACGACACGATAGCTCCAG
CAGAGTACGAGTAG
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