Gchil6860.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil6860.t1
Unique NameGchil6860.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length294
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004376_piloncontigtig00004376_pilon:438315..439196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil6860Gchil6860Gracilaria chilensis NLEC103_M9 malegenetig00004376_pilon 438315..439196 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6860.t1.start1Gchil6860.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004376_pilon 438315..438317 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6860.t1.CDS1Gchil6860.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004376_pilon 438315..439196 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6860.t1.exon1Gchil6860.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004376_pilon 438315..439196 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6860.t1.stop1Gchil6860.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004376_pilon 439194..439196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil6860.t1Gchil6860.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004376_pilon 438315..439196 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil6860.t1 ID=Gchil6860.t1|Name=Gchil6860.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=294bp
MLWPGLFSDFLTIFDASEKSKTHTVTLQSFRNVEYRFLIDDVPIILCDGC
GALQKLSAQVSSDNTLPPSKEDAASPFLKCSACSFPTPFGHFRTLLGLPN
CGPHLSPPLALAILVEAIGSEVSLDITHEALHAWIRDKKCRTEGLHVLLG
AIGARQEQLCLPQPNSCDNNEASVVLENQRSIYHNALQAESYLEKKLSPE
MFPKLPFSVSDLYQITDRDDDGAQAAERAIQVLDEANKTWKEFGASPQNN
HFAFKVSDLAKKFHVAQIQARIHNHSSFALSARKPCIQKQSSS*
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spliced messenger RNA

>Gchil6860.t1 ID=Gchil6860.t1|Name=Gchil6860.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00004376_pilon:438315..439196+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTGGCCAGGTTTATTCTCCGATTTCCTAACCATTTTCGATGCTTC
AGAGAAGTCTAAGACCCACACCGTGACGCTTCAGTCCTTCCGCAACGTCG
AATACAGATTTCTTATAGATGACGTTCCGATAATTCTATGTGACGGATGT
GGAGCGCTCCAAAAACTTTCCGCTCAGGTTTCATCCGACAACACCTTGCC
CCCTTCAAAAGAAGACGCGGCTTCCCCTTTTCTCAAATGCTCCGCGTGTA
GTTTCCCTACGCCCTTCGGTCACTTTCGCACTCTCCTTGGTTTGCCAAAC
TGTGGACCCCATCTTTCTCCGCCTCTGGCATTAGCCATCTTAGTAGAAGC
CATCGGTTCTGAGGTTTCTCTCGATATAACGCACGAGGCCCTTCACGCTT
GGATTCGAGACAAAAAGTGTCGCACTGAGGGGCTTCACGTCCTTCTTGGT
GCCATCGGTGCTAGACAAGAACAGCTATGTCTACCTCAACCTAACTCATG
CGACAACAACGAAGCGTCTGTAGTCCTAGAAAATCAACGGTCCATATATC
ACAACGCACTTCAAGCGGAAAGCTATTTGGAGAAAAAGCTTTCGCCTGAG
ATGTTTCCCAAGTTGCCCTTCTCTGTTTCAGACCTTTATCAAATTACCGA
CCGTGATGATGACGGTGCTCAGGCCGCGGAGCGAGCCATTCAGGTTTTGG
ATGAAGCTAACAAGACATGGAAGGAGTTCGGAGCTTCCCCCCAGAACAAT
CACTTCGCTTTCAAAGTGAGCGATCTTGCTAAAAAGTTTCACGTCGCTCA
AATACAAGCAAGAATTCATAATCATTCTAGTTTTGCCCTGTCTGCGAGAA
AGCCATGCATACAGAAACAATCTTCTTCATGA
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protein sequence of Gchil6860.t1

>Gchil6860.t1 ID=Gchil6860.t1|Name=Gchil6860.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=294bp
MLWPGLFSDFLTIFDASEKSKTHTVTLQSFRNVEYRFLIDDVPIILCDGC
GALQKLSAQVSSDNTLPPSKEDAASPFLKCSACSFPTPFGHFRTLLGLPN
CGPHLSPPLALAILVEAIGSEVSLDITHEALHAWIRDKKCRTEGLHVLLG
AIGARQEQLCLPQPNSCDNNEASVVLENQRSIYHNALQAESYLEKKLSPE
MFPKLPFSVSDLYQITDRDDDGAQAAERAIQVLDEANKTWKEFGASPQNN
HFAFKVSDLAKKFHVAQIQARIHNHSSFALSARKPCIQKQSSS*
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mRNA from alignment at tig00004376_pilon:438315..439196+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil6860.t1 ID=Gchil6860.t1|Name=Gchil6860.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00004376_pilon:438315..439196+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCTGGCCAGGTTTATTCTCCGATTTCCTAACCATTTTCGATGCTTC
AGAGAAGTCTAAGACCCACACCGTGACGCTTCAGTCCTTCCGCAACGTCG
AATACAGATTTCTTATAGATGACGTTCCGATAATTCTATGTGACGGATGT
GGAGCGCTCCAAAAACTTTCCGCTCAGGTTTCATCCGACAACACCTTGCC
CCCTTCAAAAGAAGACGCGGCTTCCCCTTTTCTCAAATGCTCCGCGTGTA
GTTTCCCTACGCCCTTCGGTCACTTTCGCACTCTCCTTGGTTTGCCAAAC
TGTGGACCCCATCTTTCTCCGCCTCTGGCATTAGCCATCTTAGTAGAAGC
CATCGGTTCTGAGGTTTCTCTCGATATAACGCACGAGGCCCTTCACGCTT
GGATTCGAGACAAAAAGTGTCGCACTGAGGGGCTTCACGTCCTTCTTGGT
GCCATCGGTGCTAGACAAGAACAGCTATGTCTACCTCAACCTAACTCATG
CGACAACAACGAAGCGTCTGTAGTCCTAGAAAATCAACGGTCCATATATC
ACAACGCACTTCAAGCGGAAAGCTATTTGGAGAAAAAGCTTTCGCCTGAG
ATGTTTCCCAAGTTGCCCTTCTCTGTTTCAGACCTTTATCAAATTACCGA
CCGTGATGATGACGGTGCTCAGGCCGCGGAGCGAGCCATTCAGGTTTTGG
ATGAAGCTAACAAGACATGGAAGGAGTTCGGAGCTTCCCCCCAGAACAAT
CACTTCGCTTTCAAAGTGAGCGATCTTGCTAAAAAGTTTCACGTCGCTCA
AATACAAGCAAGAATTCATAATCATTCTAGTTTTGCCCTGTCTGCGAGAA
AGCCATGCATACAGAAACAATCTTCTTCATGA
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Coding sequence (CDS) from alignment at tig00004376_pilon:438315..439196+

>Gchil6860.t1 ID=Gchil6860.t1|Name=Gchil6860.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00004376_pilon:438315..439196+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTCTGGCCAGGTTTATTCTCCGATTTCCTAACCATTTTCGATGCTTC
AGAGAAGTCTAAGACCCACACCGTGACGCTTCAGTCCTTCCGCAACGTCG
AATACAGATTTCTTATAGATGACGTTCCGATAATTCTATGTGACGGATGT
GGAGCGCTCCAAAAACTTTCCGCTCAGGTTTCATCCGACAACACCTTGCC
CCCTTCAAAAGAAGACGCGGCTTCCCCTTTTCTCAAATGCTCCGCGTGTA
GTTTCCCTACGCCCTTCGGTCACTTTCGCACTCTCCTTGGTTTGCCAAAC
TGTGGACCCCATCTTTCTCCGCCTCTGGCATTAGCCATCTTAGTAGAAGC
CATCGGTTCTGAGGTTTCTCTCGATATAACGCACGAGGCCCTTCACGCTT
GGATTCGAGACAAAAAGTGTCGCACTGAGGGGCTTCACGTCCTTCTTGGT
GCCATCGGTGCTAGACAAGAACAGCTATGTCTACCTCAACCTAACTCATG
CGACAACAACGAAGCGTCTGTAGTCCTAGAAAATCAACGGTCCATATATC
ACAACGCACTTCAAGCGGAAAGCTATTTGGAGAAAAAGCTTTCGCCTGAG
ATGTTTCCCAAGTTGCCCTTCTCTGTTTCAGACCTTTATCAAATTACCGA
CCGTGATGATGACGGTGCTCAGGCCGCGGAGCGAGCCATTCAGGTTTTGG
ATGAAGCTAACAAGACATGGAAGGAGTTCGGAGCTTCCCCCCAGAACAAT
CACTTCGCTTTCAAAGTGAGCGATCTTGCTAAAAAGTTTCACGTCGCTCA
AATACAAGCAAGAATTCATAATCATTCTAGTTTTGCCCTGTCTGCGAGAA
AGCCATGCATACAGAAACAATCTTCTTCATGA
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